bigwigtobed Posts

Latest

Open

RNA-Seq

ChIP-Seq

SNP

Assembly

Tutorials

Tools

Jobs

Forum

Planet

All »

Home

Welcome to Biostar! about • faq • rss

Community

Log In

Sign Up

Add New Post

Showing: bigwigtobed • reset

or Classic search

vote

answers

1.2k

views

answers

Bigwig to bed conversion on Windows OS without command line

easeq chip-seq windows bigwigtobed written 2.8 years ago by ahramkim1128 • 10

Recent Votes

Recent Locations • All »

India/Ahmedabad/Gujarat University, just now
United Kingdom, just now
Germany, 1 minute ago
EMBL-EBI, 2 minutes ago
Netherlands, 3 minutes ago
United Kingdom, 3 minutes ago

Recent Awards • All »

Commentator to microfuge • 1.2k
Teacher to Benn ♦ 7.5k
Scholar to Alex Reynolds ♦ 28k
Teacher to ATpoint ♦ 21k
Commentator to ATpoint ♦ 21k
Scholar to h.mon ♦ 27k

Recent Replies

C: High CDS Count in my assembled Genome using Nanopore reads (ONT) data by colindaven • 1.6k
One note about this : there's probably already Illumina data out there for your strains of intere...
C: Transform log2 fold changes in z-scores by Benn ♦ 7.5k
Okay thanks for explanation, I am not sure why you would use this protocol instead of edgeR for e...
C: GenBank accesion number to gene id by trumbia • 10
I got my model from agora which is pseudomonas areuginas and but the gene id in that model is dif...
C: Distribution of mapped reads by Grinch • 70
I don't understand why you want to annotate lncRNAs in smallRNA-seq data? You won't find any or r...
A: GFF3 annotation filtering by Buffo • 1.6k
You can use [GFFExaminer][1] from Biopython. [1]: https://biopython.org/wiki/GFF_Parsing
C: Transform log2 fold changes in z-scores by gg • 0
At first, the read counts were transformed in log2 values. The fold change decrease between treat...
A: Distribution of mapped reads by Grinch • 70
Firstly, for small RNAs you should use Bowtie2 or similar, for mapping reads, because small RNAs ...
C: Transform log2 fold changes in z-scores by Buffo • 1.6k
why do you consider your result as difficult to interpret? it looks pretty good, it looks like yo...
C: Distribution of mapped reads by ilovesuperheroes1993 • 0
Yes it was done with the NEBNext small RNA kit, specifically for miRNA and piRNA
C: Transform log2 fold changes in z-scores by Benn ♦ 7.5k
It is not clear how you calculate p-values. Why use Rank method, and where is the FDR correction?...
C: Agilent literature search in Cytoscape by ATpoint ♦ 21k
Please: https://www.biostars.org/p/357878/
C: Distribution of mapped reads by Nicolas Rosewick ♦ 8.0k
Just to be sure : is it small RNA-Seq (libraies were buid with a specific kit to catch small RNAs...

Content

Help

About
FAQ

Access

RSS
Stats
API

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Traffic: 1463 users visited in the last hour