binding sites Posts

sequence search transcription factor binding sites written 3.6 years ago by andrew.j.skelton73 ♦ 5.1k • updated 8 months ago by robinvanderlee • 10

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Finding motifs for TFs binding sites in my sequences

tfs binding sites written 20 months ago by R.Blues • 80 • updated 20 months ago by Santosh Anand • 3.5k

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616

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Genome Music for Enhancers and binding sites

enhancer music binding sites written 22 months ago by anshupa.vssut • 20 • updated 22 months ago by Chris Miller ♦ 20k

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orthologus transcrition factors and their binding sites

orthologus transcription factors binding sites written 3.2 years ago by Saad Khan • 310 • updated 3.1 years ago by Antonio R. Franco • 3.7k

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why location of binding sites are different while human sequence is the same?

enhancers cell-lines binding sites written 3.6 years ago by na.cna30 • 0 • updated 3.4 years ago by Emily_Ensembl ♦ 15k

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C: Downloading Genome Assembly and Annotation report from NCBI by saadleeshehreen • 40
Thanks a lot...:) I am looking for this one
A: Downloading Genome Assembly and Annotation report from NCBI by genomax ♦ 52k
[This file][1] should have the reports for prokaryotic genomes. `README` file says it contains t...
C: Small RNAseq data with untrimmed reads left after trimming process by genomax ♦ 52k
If those reads did not follow the expected output structure based on the kit it is possible that ...
C: Small RNAseq data with untrimmed reads left after trimming process by Shyam • 110
Where do these reads hit the genome? rRNA/tRNA? If the library prep is not good at the size fract...
C: solution for SPades to assemble genome with low quality data by StudentBio • 0
my file is 14 GB single-cell want mean it seems that i don t understand it
C: solution for SPades to assemble genome with low quality data by StudentBio • 0
50 and quality score for position in reads are betweeen 28 and 20 after trimming
C: solution for SPades to assemble genome with low quality data by StudentBio • 0
50 and quality score for position in reads are betweeen 28 and 20 after trimming
C: CWL: Getting output file of a CommandLineTool using glob by skanwal • 20
Thanks @inutano. It did the trick :)
C: How to perform differential gene expression analysis between two closely related by Vincent Laufer • 930
Although this does not address your initial question, I wanted to propose a downstream QC step th...
C: Convert (Copy Number Variation) CNV to gene by Vincent Laufer • 930
I agree with the comment above; i.e. we need to know what exactly you mean. Is what you want to s...
A: SOAP DENOVO outfile (.scafSeq) by h.mon ♦ 16k
`C some number` (e.g. C2943672) are singleton contigs, which could not be scaffolded. `scaffold s...
A: collapsing GFF coordinates with common start OR stop by h.mon ♦ 16k
First ensure your GFF is compliant with the specifications (see my comment above), then you can u...

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