binding sites Posts

sequence search transcription factor binding sites written 3.8 years ago by andrew.j.skelton73 ♦ 5.3k • updated 10 months ago by robinvanderlee • 10

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917

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Finding motifs for TFs binding sites in my sequences

tfs binding sites written 22 months ago by R.Blues • 80 • updated 22 months ago by Santosh Anand • 3.9k

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650

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Genome Music for Enhancers and binding sites

enhancer music binding sites written 2.1 years ago by anshupa.vssut • 20 • updated 2.0 years ago by Chris Miller ♦ 20k

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796

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orthologus transcrition factors and their binding sites

orthologus transcription factors binding sites written 3.3 years ago by Saad Khan • 310 • updated 3.3 years ago by Antonio R. Franco • 3.8k

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983

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why location of binding sites are different while human sequence is the same?

enhancers cell-lines binding sites written 3.8 years ago by na.cna30 • 0 • updated 3.6 years ago by Emily_Ensembl ♦ 15k

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Recent Replies

C: Count 0, 5, 20 covered sites in bam by DVA • 470
Thanks for the help! Appreciate it.
C: Count 0, 5, 20 covered sites in bam by DVA • 470
Thank you very much!
C: D. mel gene table with strand and position data? Investigating strand bias by goodez • 260
One question I have for your study... Are you just considering genes, or also their transcripts? ...
A: D. mel gene table with strand and position data? Investigating strand bias by goodez • 260
From Ensembl you can download GTF/GFF annotations which have strand information (and much more in...
C: Gene Name from PDB id by goodez • 260
This is cool, but seems a bit overcomplicated to do this for a whole list of PDB IDs. If he just ...
C: Finding if Sequence is Present in Long List of Other Sequences from Multiple Spe by gtasource • 20
Thank you for the reply. Unfortunately, we the sequence of interest is an enhancer region, so th...
C: Alternative splicing analysis by genomax ♦ 55k
Some options to consider while you wait for an answer: https://www.biostars.org/p/105037/ There i...
C: Finding if Sequence is Present in Long List of Other Sequences from Multiple Spe by genomax ♦ 55k
You have to consider the possibility that unless this sequence is regulatory in nature, it may no...
C: Analyzing fold change when Cq value in treatment condition is 0 (not expressed) by Devon Ryan ♦ 84k
In my experience qPCR machines return the number of cycles by default if there's insufficient sig...
A: Gene Name from PDB id by genomax ♦ 55k
If you use [PDB REST interface][1]. Using NCBI's unix utils $ esearch -db protein -qu...
C: Data Transformations for machine learning by Kevin Blighe ♦ 28k
Sounds good. I have done this before for metabolomics datasets. Just be aware that there is still...
C: Can i use ucsc track browser without a reference organism? by YaGalbi • 1.3k
Here are 2 MSA visualisation tools: [MSAViewer][1] and [Wasabi][2] Here are 2 R packages doing a...

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