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Taxonomic assignment of bins found by Maxbin2

taxonomy bins maxbin2 written 6 weeks ago by Hansen_869 • 10 • updated 6 weeks ago by Mensur Dlakic • 2.4k

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687

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Retrieve the segmented reads scores for different samples

ngs comparison bins written 2.3 years ago by caspase8mach • 0 • updated 2.2 years ago by Biostar ♦♦ 20

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occupancy at common specific TF binding sites

peak R chip-seq bins density written 2.0 years ago by woongjaej • 10 • updated 2.0 years ago by Kevin Blighe ♦ 52k

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CheckM and pplacer error

genome quality phylogeny bins checkm pplacer written 12 months ago by shibl_a • 20

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Recent Replies

C: how to remove N loci in a global alignment for all strains by yztxwd • 230
Do all alignments have the same length? if it is, you can try this grep -v ">" test.fa |...
C: Is there a way to convert a FASTQ file to FASTA file? by swbarnes2 ♦ 7.0k
No. Do not reinvent the wheel. Google for programs that will do what you want. You can likely ...
A: estimate tumor purity from capture panel data using tumor-only mode by markus.riester • 480
If you have at least a few processed-matched normals, you can try https://github.com/lima1/PureCN...
C: ChIP-seq lack of nucleosome depleted region by yztxwd • 230
You can't see nucleosome depleted region and +1 nucleosome (the peak in your plot doesn't look li...
C: Is there a way to convert a FASTQ file to FASTA file? by as2779 • 0
Ah that makes sense. Is there some sort of tool to assembly contigs from FASTQ files? I'm also mo...
A: how to remove N loci in a global alignment for all strains by Sishuo Wang • 180
Maybe [trimseq][1]? [1]: http://emboss.sourceforge.net/apps/cvs/emboss/apps/trimseq.html
C: Extract N amino acids from fasta file by alex.zaccaron • 120
Yes, it does. Sorry, I thought the input file was tabular format. I updated the comment.
C: Is there a way to convert a FASTQ file to FASTA file? by as2779 • 0
Yes you are correct. I want the sequence of the whole genome (as a FASTA file) given a FASTQ file...
C: Is there a way to convert a FASTQ file to FASTA file? by as2779 • 0
Hi, thank you for the response! I'm still new to the field of computational biology. How do I ma...
C: Is it possible to multiplex mora than 384 samples on Novaseq 6000 for a very low by dawn.obermoeller • 0
PerkinElmer has a set of [1536 NEXTFLEX UDI Adapters][1] for ultra high-throughput multiplexing o...
C: impute2 output files to vcf by Kevin Blighe ♦ 52k
Does this work? shapeit -convert \ --input-gen gwas \ --output-vcf gwas.vcf
C: Extract N amino acids from fasta file by Alex Reynolds ♦ 29k
Be careful! This approach makes a lot of assumptions about the structure of the FASTA file.

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