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News: R/Bioconductor for Mass Spectrometry and Proteomics course in Berlin
proteomics R bioconductor news bioinformatics written 3 hours ago by carlopecoraro2 • 1.2k
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AnnotationDbi: merge database and GO terms
R bioconductor go enrichment databases written 5 days ago by trueflyingsheep • 0
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How could I find Differential Genes in Expression Matrix File NOT gset by R?
R bioconductor microarray deg written 5 days ago by f-tavakoli • 10 • updated 5 days ago by zx8754 ♦ 7.9k
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7 follow
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DMRcate results: How to find out which CpG sites constitute each DMR
R bioconductor methylation dmrcate written 24 months ago by c.ryder3 • 20 • updated 5 days ago by pierrefransquet • 0
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69
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Convert regex into DNAString object
R bioconductor biostrings written 11 days ago by elisheva • 80
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105
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Make org.db dynamic in AnnotationDbi::mapIds()
R bioconductor written 17 days ago by sangram_keshari • 210 • updated 17 days ago by benformatics • 1.1k
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69
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Convert Granges list of peaks into consensus counts
R bioconductor granges written 17 days ago by Bioinfo_2006 • 90 • updated 17 days ago by ATpoint ♦ 21k
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Specifying Packages For Dependency Graph Creation With R
R bioconductor written 7.7 years ago by Jamie • 30 • updated 19 days ago by Biostar ♦♦ 20
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39 follow
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Tool: EnhancedVolcano: Publication-ready volcano plots with enhanced colouring and labeling
bioconductor ggplot2 ggrepel tool volcano plot written 11 months ago by Kevin Blighe ♦ 46k • updated 20 days ago by fr • 100
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7 follow
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Remove NaNs from ExpressionSet class object
R bioconductor written 23 days ago by Morteza Hadizadeh • 20
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1
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139
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News: Do you want to learn how to analyze your genomic data using R and Bioconductor?
R bioconductor news genomics bioinformatics written 24 days ago by carlopecoraro2 • 1.2k
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Getting all gene members in a Reactome Pathway
bioconductor reactome written 25 days ago by The • 140 • updated 24 days ago by alserg • 220
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R error using - BiocManager::install("mygene", version = "3.10")
R bioconductor written 6 weeks ago by jennifer.m.conrad.gr • 0 • updated 25 days ago by zx8754 ♦ 7.9k
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How to analyse CATMA microarray
R bioconductor catma microarray written 4 weeks ago by marieBvr • 0
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144
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Extract GEO for certain experiment type
geo gsm geo accession bioconductor written 5 weeks ago by mariafirulevabio • 40
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166
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Creating SingleCellExperiment class from scratch !
bioconductor monocle scrna seurat written 6 weeks ago by lokraj2003 • 70
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95
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News: Course - Metabolomics - Berlin, 25-29 November 2019
metabolomics R bioconductor news written 6 weeks ago by carlopecoraro2 • 1.2k
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News: Course - Genomics with R and Bioconductor - Berlin
R bioconductor news written 7 weeks ago by carlopecoraro2 • 1.2k
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112
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How to obtain distinct/uniqe rows from GenomicRanges object
R bioconductor genomicrange written 7 weeks ago by gundalav • 280 • updated 7 weeks ago by zx8754 ♦ 7.9k
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Identifying differentially expressed genes using R-bioconductor
gene bioconductor geo datasets clariomdhumancdf written 8 weeks ago by rucha.wadapurkar • 0 • updated 8 weeks ago by Kevin Blighe ♦ 46k
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issue with visualising cladogram/phylogenetic tree with multiple sequence alignment data in R?
R bioconductor alignment sequencing written 9 weeks ago by Dineshkumar K • 10
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147
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How to subset ExpressionSet based on vector of sample names
R bioconductor expressionset subset written 10 weeks ago by nkabo • 10
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125
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Extracting promoter sequence with GenomicFeatures ?
bioconductor genomicfeatures written 11 weeks ago by lokraj2003 • 70
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1
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154
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Creating taxonomic database using GFF3 file ?
bioconductor genomefeatures written 11 weeks ago by lokraj2003 • 70 • updated 11 weeks ago by SMK • 1.8k
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140
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NMDS plot for Amplicon 16s OTU count
vegan R bioconductor written 11 weeks ago by Bioinfonext • 150
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165
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MetagenomeSeq for amplicon differential abundance analysis
R bioconductor written 3 months ago by Bioinfonext • 150 • updated 11 weeks ago by zx8754 ♦ 7.9k
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5 follow
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Gage Vs Romer Vs Camera Vs Roast Vs Spia Vs ...
bioconductor written 5.5 years ago by January • 30 • updated 12 weeks ago by Biostar ♦♦ 20
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Moving average plot of gene expression ratio along the chromosome length
gene R bioconductor next-gen rna-seq written 3 months ago by Susmita Mandal • 50
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pData function not found. substitute? "An end to end workflow for differential gene expression using Affymetrix microarrays"
R bioconductor pvca sva pdata written 3 months ago by RNAseqer • 110 • updated 3 months ago by zx8754 ♦ 7.9k
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Why is there a difference between compressed and uncompressed files when reading it with the ShortRead::readFastq function?
R bioconductor sequencing written 3 months ago by rantanplan82 • 0 • updated 3 months ago by benformatics • 1.1k
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