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Deconvolution methods on RNAseq data
R bioconductor next-gen rna-seq sequencing written 14 months ago by Ron • 720 • updated 3 days ago by colonppg • 50
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159
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Job: Bioinformatics Analyst in University Virginia Bioinformatics Core
R bioconductor deseq2 jobs job written 8 days ago by Stephen ♦ 2.6k
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57
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locateVariants returns an empty result
indel R bioconductor variantannotation written 9 days ago by boris • 0
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75
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install Bioconductor package and its dependencies
R bioconductor written 9 days ago by alessandrotestori7 • 280 • updated 9 days ago by h.mon ♦ 13k
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goProfiles for non-model organisms with GoTermsFrame
R goprofiles functional profile bioconductor go written 13 days ago by Maria Scheel • 0
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315
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The result of differential gene expression analysis should be extracted based on adj.p.value ?
R bioconductor limma microarray toptable() written 3 months ago by R.A. • 20 • updated 15 days ago by swbarnes2 ♦ 3.4k
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Design matrix for edge R analysis?
R bioconductor limma edger statistics written 17 days ago by star • 50
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129
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edgeR RPKM Values
R bioconductor edger written 24 days ago by gtasource • 0
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105
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News: Invitation to submit articles to the Bioconductor Gateway on F1000Research
bioconductor news written 28 days ago by Sean Davis ♦ 24k
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236
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5 follow
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KEGGREST -- gene list
R keggrest bioconductor written 4 weeks ago by haiying.kong • 190 • updated 29 days ago by Damian Kao ♦ 14k
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149
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full rank designe matrix?
R bioconductor edger written 4 weeks ago by star • 50 • updated 4 weeks ago by genomax ♦ 46k
5
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1
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226
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1
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CummeRbund Column Name Mismatch Error
cummerbund cufflinks cuffdiff bioconductor rna-seq written 5 weeks ago by bryce.kirby • 0 • updated 4 weeks ago by Chaozhong Liu • 40
4
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156
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Is logFC in edgeR base e, 2, or 10?
differential bioconductor logfc edger written 6 weeks ago by O.rka • 40 • updated 6 weeks ago by Devon Ryan ♦ 78k
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148
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SRAdb: Search full text in study_type
sra bioconductor R written 6 weeks ago by rororo • 0
2
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170
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Trouble with GenomicFeatures Package
bioconductor genomicranges genomicfeatures rna-seq written 7 weeks ago by MarjoryMollusc • 30
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Forum: Tutor Wanted: Help With Gene Expression Analysis Using Bioconductor
forum gene expression bioconductor microarray written 7 weeks ago by corvustristis • 0 • updated 7 weeks ago by Ram ♦ 14k
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3
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194
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3
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Mapping Ensembl Gene IDs with dot suffix
gene ensembl biomart bioconductor written 7 weeks ago by mattkarikomi • 10 • updated 7 weeks ago by Mike Smith • 580
2
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1
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169
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How to use DNAcopy package to analyze Affymetrix SNP array?
R bioconductor copynumber snp cnv written 8 weeks ago by shixiang1994wang • 0 • updated 7 weeks ago by Eric T. • 2.1k
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3
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248
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How to apply GenVisR Bioconductor package on VCF file
vcf R bioconductor written 8 weeks ago by krithika.gu • 190
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How to create bimap with getAnnMap using ENSEMBL ids instead of ENTREZ?
R bioconductor annotation written 8 weeks ago by Pawel Szczesny ♦ 3.2k
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282
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Convert miRNA names to Entrez Gene ID
R bioconductor microrna written 4 months ago by akastrin • 0 • updated 8 weeks ago by Biostar ♦♦ 20
2
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1
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223
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RSkittleBrewer Not available
R bioconductor rna-seq written 9 weeks ago by scottschu97 • 10 • updated 9 weeks ago by h.mon ♦ 13k
4
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203
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Splitting up a bam file
R bioconductor rna-seq written 9 weeks ago by ddeemer • 0
7
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499
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5 follow
1
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Quantile Normalization in R
normalization bioconductor quantile R written 11 weeks ago by KVC_bioinfo • 310 • updated 10 weeks ago by Biostar ♦♦ 20
2
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181
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Bioconductor package NOISeq: Normalization
normalization bioconductor written 11 weeks ago by KVC_bioinfo • 310 • updated 10 weeks ago by Kevin Blighe ♦ 17k
5
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Checking Version of Bioconductor
R bioconductor written 2.8 years ago by gaiusjaugustus • 90 • updated 11 weeks ago by apa@stowers • 340
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How do I create a Sleuth Wald Test
R sleuth bioconductor rna-seq written 11 weeks ago by scottschu97 • 10 • updated 11 weeks ago by Kevin Blighe ♦ 17k
4
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476
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5 follow
1
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topGO is performing enrichment test on GO terms that are not present in my dataset
R bioconductor gene ontology topgo written 3 months ago by Fabio Marroni • 1.8k • updated 12 weeks ago by Pablo Markaide • 20
47
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42 follow
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Tutorial: Extract Total Non-Overlapping Exon Length Per Gene With Bioconductor
bioconductor fpkm forum rna-seq tutorial written 4.5 years ago by Irsan • 6.6k • updated 12 weeks ago by lhdcsu • 0
2
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154
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Sleuth: What is the correct function for fitting my sleuth object
R sleuth bioconductor rna-seq written 12 weeks ago by scottschu97 • 10 • updated 12 weeks ago by Devon Ryan ♦ 78k
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