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3
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138
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1
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Major issue with DiffBind 3?
diffbind3 diffbind chip-seq bioconductor atac-seq written 28 days ago by musaddeque.ahmed • 20 • updated 6 days ago by Rory Stark • 920
0
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0
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64
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0
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What object in GEO2R R code environment to use for ggplot2 Volcano and listing DEG?
array R bioconductor geo2r written 9 days ago by qmarulfiz • 40
1
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1
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1.1k
views
1
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error in density plot - methylation EPIC data
R bioconductor written 23 months ago by junehicks0 • 10 • updated 10 days ago by singh.vijender • 40
7
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2
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1.4k
views
6 follow
2
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Is there a way to visualize log fold changes for Reactome pathways in R?
bioconductor reactome pathview rna-seq written 22 months ago by Gabriel • 90 • updated 12 days ago by darklings • 200
0
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0
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60
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0
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News: ONLINE training - Single-cell RNA-seq analysis with R/Bioconductor. 07-11 June
singlecell R bioconductor news rna-seq written 16 days ago by carlopecoraro2 • 2.0k
0
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1
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100
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1
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Retrieving all genes associated with a GO term
R bioconductor gene-ontology written 19 days ago by dnyanadas94 • 0 • updated 19 days ago by Jean-Karim Heriche ♦ 24k
1
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1
answer
99
views
1
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Understanding 'destrand' option in Bioconductor MethylKit
bioconductor strand methylkit written 24 days ago by eb13 • 0
11
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4
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187
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6 follow
4
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Is there other IDE like R studio working on the linux?
R bioconductor rstudio bioinformatics written 27 days ago by shangguandong1996 • 10 • updated 25 days ago by fracarb8 • 80
2
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0
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146
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0
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Why enrichGO does not return any enrichment terms?
R bioconductor clusterprofiler rna-seq written 4 weeks ago by BiomedicalTissueIng • 20
0
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0
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1.3k
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5 follow
0
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Problems with ArrayExpress datasets downloads on Bioconductor
arrayexpress bioconductor written 24 months ago by Davide Chicco • 110 • updated 4 weeks ago by louis.kreitmann • 0
2
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1
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1.2k
views
1
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matchprobes and R 3.3
R bioconductor written 4.2 years ago by Ana Braga • 0 • updated 4 weeks ago by Biostar ♦♦ 20
0
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0
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104
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0
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TCGABioLinks getManifest() function. How to alter saved file name?
R bioconductor tcga written 5 weeks ago by ivykosater • 0
8
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2
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277
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7 follow
2
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What does p-value mean ? What and how can i interpret the results
R bioconductor deseq2 rna-seq written 6 weeks ago by sushumitha6 • 0 • updated 6 weeks ago by Istvan Albert ♦♦ 86k
1
vote
1
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123
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1
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Incomplete GWAS Catalog Data from makeCurrentGwascat() [R, gwascat]
gwas catalog bioconductor gwascat R written 6 weeks ago by anailis • 0
3
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1
answer
3.5k
views
1
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What is proper enrichKEGG input ids
R bioconductor clusterprofiler written 4.6 years ago by MKM • 20 • updated 11 weeks ago by Biostar ♦♦ 20
20
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2
answers
4.3k
views
7 follow
2
answers
How to run the Deseq2 tool without replicates.
R bioconductor deseq2 rna-seq written 17 months ago by fatimarasool135 • 60 • updated 11 weeks ago by chongyi.ng17 • 0
2
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1
answer
174
views
1
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[GRanges] How to append query metadata to subjectHits
R bioconductor findoverlaps granges written 11 weeks ago by ekwame • 70 • updated 11 weeks ago by Papyrus • 680
9
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3
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2.1k
views
6 follow
3
answers
Error: Every gene contains at least one zero, cannot compute log geometric means
R bioconductor deseq rna-seq written 9 months ago by imrankhanbioinfo • 30 • updated 12 weeks ago by el24 • 10
0
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0
answers
163
views
0
answers
Obtaining directionality of pathways
pathways bioconductor reactome wikipathways R written 12 weeks ago by s.may-wilson • 30
3
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0
answers
278
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0
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Reducing and aggregating GRanges with gaps using plyranges.
plyranges R bioconductor granges written 4 months ago by rpolicastro ♦ 3.9k • updated 12 weeks ago by Biostar ♦♦ 20
0
votes
5
answers
916
views
5
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Explore objects in R (ChiPseeker)
R bioconductor chipseeker written 2.3 years ago by lucatucciarone • 50 • updated 3 months ago by farmieejuriya • 0
0
votes
0
answers
134
views
0
answers
SeqinR and Codon Usage. how to customize?
software error R bioconductor written 3 months ago by projetoic • 0
0
votes
1
answer
154
views
1
answer
Single Cell Experiment colData dimensions not matching with counts dimensions
R bioconductor rna-seq written 3 months ago by cindyfang70 • 0 • updated 3 months ago by pacome.pr • 100
0
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0
answers
234
views
0
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News: Online training - Proteomics in R and Bioconductor
proteomics R bioconductor news written 3 months ago by carlopecoraro2 • 2.0k
1
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0
answers
162
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0
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calculating overlaps with Peak calls for each exon
overlap R bioconductor exon written 4 months ago by pt.taklifi • 60
4
votes
2
answers
250
views
2
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key lookup changes with AnnotationDbi version
R bioconductor written 4 months ago by james • 20 • updated 4 months ago by benformatics • 2.0k
66
votes
3
answers
21k
views
59 follow
3
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Tutorial: Extract Total Non-Overlapping Exon Length Per Gene With Bioconductor
bioconductor fpkm forum rna-seq tutorial written 7.4 years ago by Irsan • 7.3k • updated 4 months ago by Ram ♦ 32k
5
votes
1
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324
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5 follow
1
answer
How to get transcripts lengths from RNAseq data to calculate TPM
tpm bioconductor genomicfeatures rna-seq written 4 months ago by MatStat • 140 • updated 4 months ago by ATpoint ♦ 46k
6
votes
0
answers
1.9k
views
8 follow
0
answers
Tutorial: RNASeq tutorial for gene differential expression analysis
R tutorial transcriptomics bioconductor rna-seq written 7 months ago by Thind amarinder • 120
1
vote
2
answers
293
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5 follow
2
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Help needed for Ensembl Gene ID conversion for RNA-seq data - biomart / EnsDb.Hsapiens.v86
R bioconductor biomart rna-seq written 4 months ago by yangjianhunt • 10 • updated 4 months ago by sandeep.amberkar18 • 50
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