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News: The BioCompute Object App-a-thon starts on May 14!

standards bioinformatic computation pipeline news written 4 months ago by stephens_sarah • 110

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409

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Job: Bioinformatic Postdoc Position at University of Michigan

postdoc bioinformatic job written 10 months ago by yuabrahamliu • 40

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How can find LD between rows (SNPs) two by two?

R bioinformatic linkage disequilibrium genomics written 3.6 years ago by star • 190 • updated 11 months ago by RamRS ♦ 24k

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How to count tm value by Nearest-neighbor method?

bioinformatic tm value pcr written 2.8 years ago by a20012002 • 0 • updated 14 months ago by inhanlee88 • 10

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539

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Detect small deletion

prenatal analysis bioinformatic next-gen deletion written 22 months ago by martyferr90 • 30

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Tool: Databiology CIAO: Develop applications quickly and easily. Increase your productivity and enable portability with our full application development environment.

bioinformatic development apps framework tool written 2.0 years ago by JC ♦ 8.4k

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Job: Senior Bioinformatician- Fixed Term contract, CASM Group, Sanger Institute, Cambridge, UK

perl cc++ bioinformatic oracle job written 2.6 years ago by Recruit • 230 • updated 2.6 years ago by genomax ♦ 71k

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775

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How to install PANDAseq to cygwin?

pandaseq cygwin bioinformatic written 2.6 years ago by zhaojingshell • 0

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865

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Methods and type datastructures use by Splign?

tools splign methods bioinformatic datas structure written 2.9 years ago by Esaie • 110

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difficulty in underestanding terms and graphs

bioinformatic rna-seq written 3.3 years ago by DavidP • 50

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Job: Bioinformatic Analyst opportunity for a breakthrough genetic information company

genome python bioinformatic job aws written 3.6 years ago by jcooper • 60

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1.4k

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What is the reason for deviation from diagonal?

bioinformatic ggplot genetics snp statistics written 3.8 years ago by star • 190 • updated 3.8 years ago by Devon Ryan ♦ 91k

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Forum: What are the good universities to do a Bioinformatic MSc?

bioinformatic msc forum written 3.8 years ago by lmanohara99 • 20 • updated 3.8 years ago by Michael Dondrup ♦ 46k

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Multialignment of proteins sequences

bioinformatic written 3.9 years ago by nhungptt17 • 20 • updated 3.9 years ago by Abdullah • 100

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News: The NAR annual Web Server Issue is here..

bioinformatic news web servers written 4.2 years ago by Antonio R. Franco • 4.1k

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Job: Postdoctoral Researcher II (South Dakota, USA)

postdoct bioinformatic postdoctoral job rna-seq written 4.4 years ago by zohim • 0 • updated 4.4 years ago by Devon Ryan ♦ 91k

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Forum: List of popular bioinformatics software/tools

bioinformatic sofwares forum written 4.9 years ago by JorgeGonzalez • 20 • updated 4.9 years ago by Istvan Albert ♦♦ 81k

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Recent Replies

A: error message using Kraken: does not contain necessary file taxo.k2d by mcs • 0
Thank you. The link is for minikraken but I will be very happy to get that to work.
A: DESeq2 (or EdgeR) Exploratory Analysis with no Replicates by Konstantinos Yeles • 50
In addition to the EdgeR manual, you could use the [NOISeq][1] package that has a function precis...
C: Trimmomatic did a massive trimming!!! by genomax ♦ 71k
Instead of posting this in multiple old threads it would be best to post an independent `tools` p...
C: How does one count unmapped transcripts ? by roy.granit • 800
Thanks. Ended up using this code after converting my .mate1 files into bam using picardtools
C: Trimmomatic did a massive trimming!!! by genetician2016 • 0
in the RNAseq data analysis, You have to be careful to strike a balance between acceptable qualit...
A: Trimmomatic did a massive trimming!!! by genetician2016 • 0
in the RNAseq data analysis, You have to be careful to strike a balance between acceptable qualit...
C: quality trimming with trimmomatic by genetician2016 • 0
phred 33, is your imported file encoding format, actually. trimmomatic can not recommend you such...
C: error message using Kraken: does not contain necessary file taxo.k2d by genomax ♦ 71k
`kraken` and `kraken2` are different programs. If biostar handbook is referring to `kraken v.1.0`...
A: Trimmomatic: How to improve FastQC report by adjusting the thresholds in running by genetician2016 • 0
Trimmomatic detects automatically your imported file encoding PHRED format based on first 10000 r...
A: What is a good Trimmomatic parameter? by genetician2016 • 0
in the RNAseq data analysis, You have to be careful to strike a balance between acceptable qualit...
C: Large Discrepancy Between Short Read Mapping and Kmer Analysis by nickeener • 0
HowDeSBT (https://github.com/medvedevgroup/HowDeSBT)
C: Extract every CDS sequences from a VCF file by maxime.policarpo • 80
I would like to make multiple alignments of CDS with the reference sequence and the alternate seq...

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