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TransDecoder in Linux

bioinformatic sequence written 8 weeks ago by lexa_2294 • 0 • updated 8 weeks ago by alex.zaccaron • 170

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214

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Bacterial RNAseq - Help for beginner

bacteria bioinformatic next-gen rna-seq written 10 weeks ago by liz.marjory • 10 • updated 10 weeks ago by ahmad mousavi • 480

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337

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News: The BioCompute Object App-a-thon starts on May 14!

standards bioinformatic computation pipeline news written 14 months ago by stephens_sarah • 150

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593

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Job: Bioinformatic Postdoc Position at University of Michigan

postdoc bioinformatic job written 20 months ago by yuabrahamliu • 40

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How can find LD between rows (SNPs) two by two?

R bioinformatic linkage disequilibrium genomics written 4.4 years ago by star • 240 • updated 21 months ago by RamRS ♦ 27k

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How to count tm value by Nearest-neighbor method?

bioinformatic tm value pcr written 3.6 years ago by a20012002 • 0 • updated 2.0 years ago by inhanlee88 • 10

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680

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Detect small deletion

prenatal analysis bioinformatic next-gen deletion written 2.7 years ago by martyferr90 • 30

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1.2k

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Tool: Databiology CIAO: Develop applications quickly and easily. Increase your productivity and enable portability with our full application development environment.

bioinformatic development apps framework tool written 2.9 years ago by JC ♦ 10k

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1.3k

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Job: Senior Bioinformatician- Fixed Term contract, CASM Group, Sanger Institute, Cambridge, UK

perl cc++ bioinformatic oracle job written 3.4 years ago by Recruit • 230 • updated 3.4 years ago by genomax ♦ 85k

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928

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How to install PANDAseq to cygwin?

pandaseq cygwin bioinformatic written 3.4 years ago by zhaojingshell • 0

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Methods and type datastructures use by Splign?

tools splign methods bioinformatic datas structure written 3.7 years ago by Esaie • 140

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difficulty in underestanding terms and graphs

bioinformatic rna-seq written 4.1 years ago by DavidP • 50

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Job: Bioinformatic Analyst opportunity for a breakthrough genetic information company

genome python bioinformatic job aws written 4.4 years ago by jcooper • 60

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1.6k

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What is the reason for deviation from diagonal?

bioinformatic ggplot genetics snp statistics written 4.6 years ago by star • 240 • updated 4.6 years ago by Devon Ryan ♦ 95k

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Forum: What are the good universities to do a Bioinformatic MSc?

bioinformatic msc forum written 4.6 years ago by lmanohara99 • 20 • updated 4.6 years ago by Michael Dondrup ♦ 47k

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Multialignment of proteins sequences

bioinformatic written 4.7 years ago by nhungptt17 • 20 • updated 4.7 years ago by Abdullah • 100

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1.6k

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News: The NAR annual Web Server Issue is here..

bioinformatic news web servers written 5.0 years ago by Antonio R. Franco • 4.5k

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Job: Postdoctoral Researcher II (South Dakota, USA)

postdoct bioinformatic postdoctoral job rna-seq written 5.2 years ago by zohim • 0 • updated 5.2 years ago by Devon Ryan ♦ 95k

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Forum: List of popular bioinformatics software/tools

bioinformatic sofwares forum written 5.8 years ago by JorgeGonzalez • 20 • updated 5.8 years ago by Istvan Albert ♦♦ 84k

Recent Votes

Recent Locations • All »

University of Technology Sydney, Australia, 6 minutes ago
University of Cape Town, 11 minutes ago

Recent Awards • All »

Appreciated to Kevin Blighe ♦ 61k
Autobiographer to Foodome Team • 0
Scholar to genomax ♦ 85k
Appreciated to WouterDeCoster ♦ 44k
Teacher to Asaf ♦ 8.1k
Scholar to caggtaagtat • 1.1k

Recent Replies

A: Finding Unique genes in Roary output by Mensur Dlakic • 5.8k
From what I can tell, you need to find rows in `gene_absence_presence_file` where the sum of valu...
C: PureCN prepare environment error by markus.riester • 490
Hm, this shouldn't be that difficult. Did you run samtools faidx GRCh38.d1.vd1.fa? This should ...
C: How to extract sample IDs from VCF into new VCF? by Pierre Lindenbaum ♦ 129k
> I've written a script that extracts VCF IDs from a large VCF, in order to get a subset of th...
C: Produce PCA bi-plot for 1000 Genomes Phase III - Version 2 by rodd • 100
Hi [Kevin Blighe][1], thanks for this incredible tutorial! I was wondering: having obtained the p...
C: Replace heterozygous GT to missing in vcf file using bcftools by RamRS ♦ 27k
Sorry, I'd made a typo that led to a formatting error - I've edited that now. What is the full co...
A: DESeq2 Not Recognizing that my data set has been transformed when inputting. Hel by swbarnes2 ♦ 7.9k
I don't think you can import a vst transformed dataset like that. For one thing, when you run vs...
C: BBMap Statistics Evaluation by genomax ♦ 85k
Since you are looking at two *E.coli* genomes it is not surprising that the % unambiguous reads i...
C: Tool to merge two GTFs by genomax ♦ 85k
This should help : https://github.com/NBISweden/AGAT
C: BBMap Statistics Evaluation by genomax ♦ 85k
Total number of reads is reported in BBMap/BBsplit stats. OP has not included that information. T...
C: How to generate dotplot for gene expression data differential gene expression an by sunnykevin97 • 50
Yes, helpful I'll try on my data and update you.Thanks.
C: GATK Mutect2 Panel-Of-Normals generation by cocchi.e89 • 80
Looks like it did the trick. Thank you very much @WouterDeCoster !
C: How to generate dotplot for gene expression data differential gene expression an by antonioggsousa • 370
Hi, To do a **dotplot** like that you can try something like this: dot_plot <- ggplot(...

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