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<prev • 374 results • page 1 of 13 • next >
1
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86
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biomaRt search for a list of values [dplyr + column(s)]
ensembl biomart written 9 days ago by deepue • 130 • updated 9 days ago by rpolicastro • 570
6
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0
answers
172
views
0
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Get the location of a promoter from a gene
gene R bioconductor biomart written 17 days ago by Will Yam • 10
2
votes
1
answer
85
views
1
answer
Gene symbol of chinese hamster
R biomart written 25 days ago by rykerklie7 • 10 • updated 25 days ago by Jean-Karim Heriche ♦ 23k
19
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3
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23k
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10 follow
3
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Biomart Bioconductor - Retrieving All Entrezgenes Of Hsapiens_Gene_Ensembl
R biomart bioconductor written 8.0 years ago by sthait • 90 • updated 25 days ago by Thind Amarinder • 30
1
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0
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108
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0
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How to obtain the chromosomal location for a list of 8M SNPs?
vcf R biomart snp ensembl written 25 days ago by aroso491 • 0
0
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0
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55
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0
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RDAVIDWebService Package Official Gene Symbol IDs in GO Functional Annotation Charts
R biomart gene ontology rdavidwebservice goterm written 25 days ago by ra711 • 0
2
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0
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84
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0
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Finding subcellular localization of genes using biomaRt - filter not found
R biomart written 25 days ago by andyincolorado • 0
0
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0
answers
68
views
0
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Creating TxDB objects from different sources
genome annotation txdb biomart ensembl written 26 days ago by mickey_95 • 10
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0
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70
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0
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Unable to convert GTEx v8 ensemble gene id+version to gene names using biomart
ensembl biomart gtex written 29 days ago by pcmph • 10 • updated 29 days ago by geek_y ♦ 11k
0
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1
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99
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1
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Converting mouse Ensembl ID's to gene names in a data frame
R biomart pheatmap rna-seq clustering written 4 weeks ago by lmck0705 • 0 • updated 4 weeks ago by Kevin Blighe ♦ 63k
3
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1
answer
162
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1
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Loop to retrieve rsID out of chrID list
genome R biomart snp written 6 weeks ago by aroso491 • 0 • updated 5 weeks ago by Mike Smith • 1.5k
3
votes
2
answers
122
views
2
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lift over gene ids rat to human
R biomart rna-seq written 5 weeks ago by sim.j.baum • 50 • updated 5 weeks ago by Mike Smith • 1.5k
1
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1
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463
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1
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Error in H5Fopen(file, "H5F_ACC_RDONLY", native = native) : HDF5. File accessibilty. Unable to open file.
software error biomart sleuth rna-seq kallisto written 3 months ago by ladavion • 10 • updated 6 weeks ago by jocelyn.petitto • 10
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1
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88
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5 follow
1
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biomaRt::getSequence - Invalid type argument
R biomart getsequence() written 6 weeks ago by mbk0asis • 550
3
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1
answer
142
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1
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Zebrafish Ensembl gene ID to RefSeq protein accession?
ensembl database refseq biomart convert written 8 weeks ago by gabe.preising • 10 • updated 7 weeks ago by Kevin Blighe ♦ 63k
2
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1
answer
93
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1
answer
NA return when searching for 3'UTRs in biomaRt
R na utr biomart written 9 weeks ago by beccafhhs • 10 • updated 9 weeks ago by Ben_Ensembl • 1.5k
5
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1
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164
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1
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Biomart query returns NA when searching for entrez_id, while manual search works
R biomart arabidopsis refseq written 10 weeks ago by eggrandio • 40 • updated 10 weeks ago by Kevin Blighe ♦ 63k
0
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1
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144
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1
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Error with using getBM function in biomaRt
software error R biomart rna-seq written 10 weeks ago by morteza.aslanzadeh • 10
0
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0
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209
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0
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Can getSequence get sequence of coding and its upstream in one entry?
getsquence biomart written 4 months ago by oboeconcerto314 • 0 • updated 3 months ago by Biostar ♦♦ 20
5
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2
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347
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2
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(mouse) Convert hugo symbol (i think) to Ensembl ID
gene R biomart rna-seq ensembl written 4 months ago by Wesley • 10 • updated 4 months ago by zx8754 ♦ 9.4k
1
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1
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259
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1
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SNP to CHR:POS mapping: dealing with genome patches
genome identifier biomart snp hg19 written 4 months ago by petar.v.todorov • 10 • updated 4 months ago by Ben_Ensembl • 1.5k
3
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0
answers
207
views
0
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convert NCBI to GO terms with biomart for r
ncbi ensembl biomart conversion R written 4 months ago by marongiu.luigi • 520 • updated 4 months ago by zx8754 ♦ 9.4k
1
vote
1
answer
246
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1
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Biomart mapping ensembl_transcript_id_version
ensembl biomart version rna-seq written 5 months ago by christoph.neu • 0 • updated 5 months ago by Ben_Ensembl • 1.5k
4
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1
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1.7k
views
1
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Retrieving phytozome data using the R bioconductor package biomaRt
phytozome R bioconductor biomart written 2.9 years ago by Fabio Marroni • 2.6k • updated 5 months ago by l.willianpacheco • 0
0
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1
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156
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1
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BiomaRt Many to Many Relationship filtering
orthologs biomart ensemble orthology written 5 months ago by iislam • 0 • updated 5 months ago by Ben_Ensembl • 1.5k
8
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4
answers
5.2k
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7 follow
4
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KEGG pathways associated to a gene using BiomaRt
pathways biomart kegg R written 6.1 years ago by TitoPullo • 160 • updated 5 months ago by Asaf ♦ 8.3k
2
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1
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227
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1
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Safe to convert entrez gene id to ensembl gene id
biomart rna-seq go kegg written 6 months ago by tmms • 10 • updated 6 months ago by mark.ziemann • 1.2k
8
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0
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344
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8 follow
0
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I have 2 identical jupyter notebooks and I get BiomartException when I run one but not the other.
python biomart written 6 months ago by Maria K • 50 • updated 6 months ago by Biostar ♦♦ 20
20
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1
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5.1k
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23 follow
1
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Difference between GO.db, biomaRt, and org.Hs.eg.db in GO annotations
R biomart go go.db written 2.7 years ago by lihaone • 100 • updated 6 months ago by Biostar ♦♦ 20
3
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1
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258
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1
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Query genomic position based on rsID in BiomaRt
R biomart snps genomic position written 7 months ago by Yean • 120
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