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5
votes
1
answer
74
views
1
answer
biomaRt rnorvegicus_gene_ensembl dataset is not valid!
biomart written 9 days ago by biocyberman • 690 • updated 9 days ago by Mike Smith • 820
1
vote
1
answer
149
views
1
answer
How to get a nucleotide at a specified position using a GenBank chromosome accession ID with biomaRt?
R biomart bioconductor genbank accession id written 19 days ago by foxdie • 0
0
votes
0
answers
113
views
0
answers
Affymetrix Human Genome U133 Plus 2.0 Array
R biomart written 19 days ago by sujasubramanian • 20 • updated 19 days ago by zx8754 ♦ 4.7k
0
votes
1
answer
94
views
1
answer
Ensembl biomaRt down
ensembl biomart written 20 days ago by sergio.artsc • 0 • updated 20 days ago by genomax ♦ 52k
3
votes
1
answer
75
views
1
answer
amino acid alteration position for SNPs using biomart
snps locations biomart aminoacids written 24 days ago by tarek.mohamed • 180 • updated 24 days ago by b.nota ♦ 4.3k
15
votes
3
answers
196
views
6 follow
3
answers
Obtaining rsIDs using BiomaRt or linux
R biomart snps rsid bed written 25 days ago by camerond • 10 • updated 25 days ago by Pierre Lindenbaum ♦ 110k
2
votes
1
answer
100
views
1
answer
How to avoid annotating multiple genes to a single CpG locus?
tcgabiolinks R biomart dna annotation written 6 weeks ago by mathias.heydt • 80 • updated 5 weeks ago by Mike Smith • 820
2
votes
1
answer
809
views
1
answer
BioMart dataset for S pombe
s. pombe R biomart genomicfeatures bioconductor written 18 months ago by cl10101 • 40 • updated 5 weeks ago by WouterDeCoster ♦ 30k
4
votes
1
answer
1.4k
views
1
answer
How to query sequences from reference genome with R?
latest biomart R written 2.7 years ago by amir.jebelli • 50 • updated 6 weeks ago by Biostar ♦♦ 20
13
votes
4
answers
5.0k
views
5 follow
4
answers
Annotation Of Affymetrix Human Exon St. 1.0
annotation biomart exon microarray affymetrix written 7.4 years ago by Some • 40 • updated 6 weeks ago by popantrop • 20
4
votes
1
answer
143
views
1
answer
How to deal with rsIDs that not include in dbSNP
biomart snp written 6 weeks ago by Huichen03 • 10 • updated 6 weeks ago by Emily_Ensembl ♦ 15k
3
votes
1
answer
303
views
1
answer
GO enrichment analysis using biomaRt
biomart rna-seq written 8 weeks ago by preetomregon • 0
11
votes
2
answers
179
views
2
answers
BioMart: connection fails
biomart written 9 weeks ago by salamandra • 130 • updated 9 weeks ago by Mike Smith • 820
6
votes
1
answer
167
views
1
answer
snp annotation using BiomaRt
gene R biomart snp written 11 weeks ago by Huichen03 • 10 • updated 11 weeks ago by Emily_Ensembl ♦ 15k
3
votes
2
answers
208
views
5 follow
2
answers
Query Genes within regions
bedtools R biomart query written 11 weeks ago by v82masae • 60 • updated 11 weeks ago by Mike Smith • 820
11
votes
4
answers
393
views
7 follow
4
answers
Mapping Ensembl Gene IDs with dot suffix
gene ensembl biomart bioconductor written 4 months ago by mattkarikomi • 20 • updated 11 weeks ago by PavolG • 0
1
vote
3
answers
203
views
6 follow
3
answers
Where can I download homo sapiens gene locations file including ensembl gene id, chr, start and end?
gene biomart snp written 12 weeks ago by Huichen03 • 10 • updated 12 weeks ago by JJ • 320
2
votes
1
answer
148
views
1
answer
How to Deal With Multiple ZFIN_IDs
ensembl biomart id convert zfin written 3 months ago by sallehl • 0 • updated 12 weeks ago by Emily_Ensembl ♦ 15k
0
votes
1
answer
1.1k
views
1
answer
PAC to transcript_name
biomart written 4.1 years ago by int11ap1 • 310 • updated 3 months ago by Biostar ♦♦ 20
1
vote
1
answer
300
views
1
answer
add gene names from RefSeq instead of ENSEMBL using biomaRT for sleuth when reading kallisto output
sleuth alignment refseq biomart rna-seq written 4 months ago by Abiterkuile • 20 • updated 4 months ago by Emily_Ensembl ♦ 15k
5
votes
1
answer
743
views
1
answer
Get gene symbols from gene ids for mouse using BioMart
gene symbols mouse biomart gene ids written 4 months ago by nikitavlassenko • 0
3
votes
0
answers
247
views
0
answers
TSS coordinates from Ensembl Biomart
ensembl biomart written 5 months ago by ZheFrench • 130 • updated 4 months ago by Biostar ♦♦ 20
1
vote
1
answer
229
views
1
answer
How to get Transcription End site (TES) via ensembl biomart ?
ensembl biomart written 5 months ago by ZheFrench • 130 • updated 5 months ago by Ben_Ensembl • 600
0
votes
1
answer
269
views
1
answer
Biomart error: Does anyone know how to solve this error?
genome R biomart ensembl written 5 months ago by star • 60 • updated 5 months ago by Denise - Open Targets • 4.5k
0
votes
1
answer
268
views
1
answer
Error in BioMartVersion
gene R biomart gene symbol entrezid written 5 months ago by hodayabeer • 0 • updated 5 months ago by James Ashmore • 2.5k
0
votes
0
answers
280
views
0
answers
Counting the number of paralogues for mouse genes gives me the wrong frequency
R biomart bioinformatics ensembl written 5 months ago by up728920 • 0
4
votes
2
answers
385
views
2
answers
Error using BioMart. No encoding supplied.
genome R biomart bio rna-seq written 6 months ago by scottschu97 • 10 • updated 6 months ago by Mike Smith • 820
1
vote
2
answers
3.1k
views
2
answers
Deseq2 gene name annotation
gene symbol ensemble biomart rna-seq deseq1 written 3.0 years ago by BM • 10 • updated 6 months ago by Biostar ♦♦ 20
9
votes
3
answers
1.6k
views
5 follow
3
answers
biomaRt mmusculus_gene_ensembl dataset
biomart written 7 months ago by igor ♦ 6.4k • updated 7 months ago by Mike Smith • 820
6
votes
2
answers
420
views
2
answers
biomaRt: Cannot access the zebra fish dataset
R biomart written 7 months ago by francois • 10 • updated 7 months ago by Mike Smith • 820
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