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<prev • 385 results • page 1 of 13 • next >
3
votes
3
answers
194
views
3
answers
biomaRt error while converting ensembl gene Id to uniprot ID
R biomart uniprot ensembl written 6 weeks ago by manaswwm • 130
3
votes
1
answer
196
views
1
answer
is there a soln to Error in scan file = file, what = what, sep = sep, quote = quote, dec = dec, line 1 did not have 3 elements
R biomart gene ontology written 14 days ago by peter.berry5 • 0
29
votes
1
answer
1.4k
views
14 follow
1
answer
getBM error while using bioMart
ensembl biomart getbm written 17 days ago by MatStat • 120 • updated 16 days ago by user17394 • 0
1
vote
2
answers
122
views
5 follow
2
answers
Help needed for Ensembl Gene ID conversion for RNA-seq data - biomart / EnsDb.Hsapiens.v86
R bioconductor biomart rna-seq written 21 days ago by yangjianhunt • 10 • updated 20 days ago by sandeep.amberkar18 • 50
0
votes
0
answers
104
views
0
answers
Pybiomart quering Ensembl Variation 101
gene python biomart software error ensembl written 4 weeks ago by tomaszewskiolaf • 0
0
votes
0
answers
152
views
0
answers
bioMart ENSEMBL_MART_VEGA exists?
gene name vega biomart written 6 weeks ago by michael.j.apostolides • 0
0
votes
0
answers
107
views
0
answers
Can you do KEGG analysis in R without Entrez I.D.s
R biomart entrez rna-seq kegg written 7 weeks ago by devarts • 10
0
votes
0
answers
297
views
0
answers
Can getSequence get sequence of coding and its upstream in one entry?
getsquence biomart written 6 months ago by oboeconcerto314 • 0 • updated 8 weeks ago by Biostar ♦♦ 20
3
votes
1
answer
203
views
1
answer
topGO GO enrichment analysis for common DEGs from multiple pairwise comparisons
ensembl biomart topgo go enrichment written 8 weeks ago by anikng • 0 • updated 8 weeks ago by antonioggsousa • 1.5k
1
vote
1
answer
149
views
1
answer
Why bioMart query results in a low coverage of annotations
biomart microarray written 9 weeks ago by xiaoyonf • 40 • updated 9 weeks ago by RamRS ♦ 30k
3
votes
1
answer
240
views
1
answer
Converting HGNC to ensembl and entrez id's using biomart
R biomart written 9 weeks ago by akansha.gitanjali • 20 • updated 9 weeks ago by Kevin Blighe ♦ 66k
1
vote
1
answer
166
views
1
answer
Geneid between regions of chromosome
ensembl biomart vep geneid written 10 weeks ago by devarora • 240 • updated 10 weeks ago by Ben_Ensembl • 1.6k
1
vote
1
answer
161
views
1
answer
biomaRt search for a list of values [dplyr + column(s)]
ensembl biomart written 12 weeks ago by deepue • 130 • updated 12 weeks ago by rpolicastro • 2.0k
6
votes
0
answers
258
views
0
answers
Get the location of a promoter from a gene
gene R bioconductor biomart written 3 months ago by Will Yam • 10
2
votes
1
answer
113
views
1
answer
Gene symbol of chinese hamster
R biomart written 3 months ago by rykerklie7 • 10 • updated 3 months ago by Jean-Karim Heriche ♦ 23k
19
votes
3
answers
24k
views
10 follow
3
answers
Biomart Bioconductor - Retrieving All Entrezgenes Of Hsapiens_Gene_Ensembl
R biomart bioconductor written 8.3 years ago by sthait • 100 • updated 3 months ago by Thind amarinder • 90
2
votes
0
answers
193
views
0
answers
How to obtain the chromosomal location for a list of 8M SNPs?
vcf R biomart snp ensembl written 3 months ago by aroso491 • 0
0
votes
0
answers
99
views
0
answers
RDAVIDWebService Package Official Gene Symbol IDs in GO Functional Annotation Charts
R biomart gene ontology rdavidwebservice goterm written 3 months ago by ra711 • 0
2
votes
0
answers
146
views
0
answers
Finding subcellular localization of genes using biomaRt - filter not found
R biomart written 3 months ago by andyincolorado • 0
0
votes
0
answers
140
views
0
answers
Creating TxDB objects from different sources
genome annotation txdb biomart ensembl written 3 months ago by mickey_95 • 10
0
votes
0
answers
115
views
0
answers
Unable to convert GTEx v8 ensemble gene id+version to gene names using biomart
ensembl biomart gtex written 3 months ago by pcmph • 10 • updated 3 months ago by geek_y ♦ 11k
0
votes
1
answer
175
views
1
answer
Converting mouse Ensembl ID's to gene names in a data frame
R biomart pheatmap rna-seq clustering written 3 months ago by lmck0705 • 0 • updated 3 months ago by Kevin Blighe ♦ 66k
3
votes
1
answer
241
views
1
answer
Loop to retrieve rsID out of chrID list
genome R biomart snp written 4 months ago by aroso491 • 0 • updated 3 months ago by Mike Smith • 1.6k
3
votes
2
answers
249
views
2
answers
lift over gene ids rat to human
R biomart rna-seq written 3 months ago by sim.j.baum • 50 • updated 3 months ago by Mike Smith • 1.6k
1
vote
1
answer
816
views
1
answer
Error in H5Fopen(file, "H5F_ACC_RDONLY", native = native) : HDF5. File accessibilty. Unable to open file.
software error biomart sleuth rna-seq kallisto written 5 months ago by ladavion • 10 • updated 4 months ago by jocelyn.petitto • 10
7
votes
1
answer
132
views
5 follow
1
answer
biomaRt::getSequence - Invalid type argument
R biomart getsequence() written 4 months ago by mbk0asis • 570
3
votes
1
answer
218
views
1
answer
Zebrafish Ensembl gene ID to RefSeq protein accession?
ensembl database refseq biomart convert written 4 months ago by gabe.preising • 10 • updated 4 months ago by Kevin Blighe ♦ 66k
2
votes
1
answer
128
views
1
answer
NA return when searching for 3'UTRs in biomaRt
R na utr biomart written 4 months ago by beccafhhs • 10 • updated 4 months ago by Ben_Ensembl • 1.6k
5
votes
1
answer
236
views
1
answer
Biomart query returns NA when searching for entrez_id, while manual search works
R biomart arabidopsis refseq written 4 months ago by eggrandio • 40 • updated 4 months ago by Kevin Blighe ♦ 66k
0
votes
1
answer
217
views
1
answer
Error with using getBM function in biomaRt
software error R biomart rna-seq written 5 months ago by Apex92 • 20
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