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<prev • 356 results • page 1 of 12 • next >
5
votes
2
answers
71
views
2
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(mouse) Convert hugo symbol (i think) to Ensembl ID
gene R biomart rna-seq ensembl written 11 days ago by Wesley • 10 • updated 11 days ago by zx8754 ♦ 9.1k
1
vote
1
answer
169
views
1
answer
SNP to CHR:POS mapping: dealing with genome patches
genome identifier biomart snp hg19 written 14 days ago by petar.v.todorov • 10 • updated 13 days ago by Ben_Ensembl • 1.3k
3
votes
0
answers
94
views
0
answers
convert NCBI to GO terms with biomart for r
ncbi ensembl biomart conversion R written 18 days ago by marongiu.luigi • 490 • updated 18 days ago by zx8754 ♦ 9.1k
1
vote
1
answer
90
views
1
answer
Biomart mapping ensembl_transcript_id_version
ensembl biomart version rna-seq written 26 days ago by christoph.neu • 0 • updated 26 days ago by Ben_Ensembl • 1.3k
4
votes
1
answer
1.5k
views
1
answer
Retrieving phytozome data using the R bioconductor package biomaRt
phytozome R bioconductor biomart written 2.6 years ago by Fabio Marroni • 2.5k • updated 4 weeks ago by l.willianpacheco • 0
0
votes
1
answer
90
views
1
answer
BiomaRt Many to Many Relationship filtering
orthologs biomart ensemble orthology written 5 weeks ago by iislam • 0 • updated 5 weeks ago by Ben_Ensembl • 1.3k
8
votes
4
answers
4.8k
views
7 follow
4
answers
KEGG pathways associated to a gene using BiomaRt
pathways biomart kegg R written 5.8 years ago by TitoPullo • 160 • updated 6 weeks ago by Asaf ♦ 7.3k
2
votes
1
answer
91
views
1
answer
Safe to convert entrez gene id to ensembl gene id
biomart rna-seq go kegg written 8 weeks ago by tmms • 10 • updated 8 weeks ago by mark.ziemann • 1.2k
8
votes
0
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221
views
8 follow
0
answers
I have 2 identical jupyter notebooks and I get BiomartException when I run one but not the other.
python biomart written 10 weeks ago by Maria K • 50 • updated 10 weeks ago by Biostar ♦♦ 20
19
votes
1
answer
4.3k
views
23 follow
1
answer
Difference between GO.db, biomaRt, and org.Hs.eg.db in GO annotations
R biomart go go.db written 2.3 years ago by lihaone • 90 • updated 11 weeks ago by Biostar ♦♦ 20
3
votes
1
answer
148
views
1
answer
Query genomic position based on rsID in BiomaRt
R biomart snps genomic position written 3 months ago by Yean • 10
2
votes
2
answers
514
views
2
answers
Arabidopsis Gene ID Conversion (BioMart, CLC Genomics Workbench Output)
R biomart arabidopsis rna-seq written 10 months ago by jamesfischer047 • 10 • updated 4 months ago by Biostar ♦♦ 20
3
votes
1
answer
180
views
1
answer
Extract Y chromosome genes from the mc57bl6nj_gene_ensembl dataset? No Y filter?
genome R biomart sequence gene written 4 months ago by eknichols • 10 • updated 4 months ago by zx8754 ♦ 9.1k
4
votes
1
answer
173
views
1
answer
Retreiving 1:1 orthologs from Ensembl Compara using R Biomart
orthologs ensembl biomart compara R written 4 months ago by asente • 10 • updated 4 months ago by Emily_Ensembl ♦ 20k
1
vote
1
answer
150
views
1
answer
biomart function getbm can not get chromesome location of some genes
gene genome biomart R written 4 months ago by Feng Zhang • 10 • updated 4 months ago by Emily_Ensembl ♦ 20k
3
votes
1
answer
260
views
1
answer
Gene Locus to ENSEMBL ID
R biomart written 6 months ago by Scott McKay • 20 • updated 4 months ago by Biostar ♦♦ 20
57
votes
3
answers
25k
views
37 follow
3
answers
How To Get Bed File Containing Exons Of Canonical Transcripts And Their Corresponding Gene Symbols
bed biomart transcript ucsc written 6.1 years ago by pristanna • 570 • updated 5 months ago by knsvar • 10
1
vote
5
answers
891
views
9 follow
5
answers
How to get number of exons for each transcript in biomart
biomart written 13 months ago by lauren.fehrman • 0 • updated 5 months ago by asrmpr • 0
2
votes
1
answer
171
views
1
answer
biomaRt Biotype Predictions
R biomart biotype written 5 months ago by Scott McKay • 20 • updated 5 months ago by Emily_Ensembl ♦ 20k
3
votes
1
answer
254
views
1
answer
Duplicate and Different Annotations using biomaRt
ensembl biomart annotations biobase written 5 months ago by JourneyToAbyss • 110 • updated 5 months ago by Kevin Blighe ♦ 56k
1
vote
0
answers
804
views
0
answers
Ensembl transcript id, mismatch between ensembl_transcript_id_version and ensembl_transcript_id
R biomart ensembl written 5 months ago by hardervidertsie • 10 • updated 5 months ago by zx8754 ♦ 9.1k
4
votes
1
answer
714
views
1
answer
How to deal with the missing values after converting genes to Entrez Gene ID using BioMart?
R biomart written 6 months ago by lihe.liu • 20 • updated 6 months ago by Emily_Ensembl ♦ 20k
2
votes
1
answer
241
views
5 follow
1
answer
biomaRt and gprofiler not mapping rsid's that exist on ensembl site
enembl biomart gprofiler rsid map written 6 months ago by bdarius85 • 10 • updated 6 months ago by swbarnes2 ♦ 7.5k
8
votes
1
answer
243
views
1
answer
Mapping Entrez gene ids to Ensembl ids
gene R biomart entrez ensembl written 6 months ago by Natasha • 40 • updated 6 months ago by Mike Smith • 1.4k
6
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2
answers
1.0k
views
2
answers
biomaRt: Cannot access the zebra fish dataset
R biomart written 2.3 years ago by francois • 10 • updated 6 months ago by fatimarasool135 • 50
0
votes
0
answers
311
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0
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Duplicates in Biomart Query, Ensembl ID maps to multiple Entrez genes.
ncbi ensembl biomart written 8 months ago by adam.faranda • 80 • updated 6 months ago by Biostar ♦♦ 20
2
votes
0
answers
552
views
0
answers
Converting Ensembl gene IDs to Entrez IDs for indexing gene set collections for doing "Ensemble of Gene Set Enrichment Analyses"
egsea biomart rna-seq edger limma written 7 months ago by F. Golestan • 50 • updated 7 months ago by RamRS ♦ 26k
1
vote
1
answer
250
views
1
answer
What is the gold standard for the one-to-many relationships in BioMart retrieved annotations and adding them to a DESeq2 results table
one-to-many relationships biomart deseq2 written 7 months ago by 2405592M • 60 • updated 7 months ago by Mike Smith • 1.4k
1
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1
answer
315
views
1
answer
Unable to access ensembl biomart archives via R
R biomart ensembl written 8 months ago by johntimcham • 0 • updated 7 months ago by Mike Smith • 1.4k
0
votes
0
answers
249
views
0
answers
How to filter "only Mrna "s from total RNA ?
biomart total rna written 8 months ago by XBria • 60
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