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What is the gold standard for the one-to-many relationships in BioMart retrieved annotations and adding them to a DESeq2 results table
one-to-many relationships biomart deseq2 written 4 days ago by 2405592M • 30 • updated 3 days ago by Mike Smith • 1.3k
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84
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Unable to access ensembl biomart archives via R
R biomart ensembl written 8 days ago by johntimcham • 0 • updated 5 days ago by Mike Smith • 1.3k
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0
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88
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Duplicates in Biomart Query, Ensembl ID maps to multiple Entrez genes.
ncbi ensembl biomart written 12 days ago by adam.faranda • 10
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108
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How to filter "only Mrna "s from total RNA ?
biomart total rna written 14 days ago by XBria • 50
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1
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9 follow
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Using biomaRt to convert gene symbols to entrez id in dataframe of gene-sets
R biomart entrez written 14 months ago by jack.bakewell • 20 • updated 16 days ago by zx8754 ♦ 7.9k
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100
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Problem with saving all the whole data in R using biomaRt
R biomart written 20 days ago by palaganiajay • 0
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1
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96
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1
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Homology in EMBL Biomart
biomart homology written 4 weeks ago by The Last Word • 170 • updated 4 weeks ago by Ben_Ensembl • 1.0k
7
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1
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367
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1
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BioMart : the BioMart webservice returned an invalid result
biomart snp written 9 weeks ago by amandinelecerfdefer • 20 • updated 6 weeks ago by Biostar ♦♦ 20
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1
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119
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1
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R: How to save Mart object (BiomaRt package)
R biomart rna-seq written 6 weeks ago by m93 • 170 • updated 6 weeks ago by Mike Smith • 1.3k
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5 follow
1
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Ensembl id to GeneSymbol with biomart
biomart written 24 months ago by Vasu • 340 • updated 7 weeks ago by Biostar ♦♦ 20
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1
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128
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1
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Ensembl Biomart overlap QTL regions and genes
genome ensembl biomart written 10 weeks ago by Wietje • 200 • updated 9 weeks ago by Emily_Ensembl ♦ 18k
1
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0
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205
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0
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Getting Ensembl gene ID via biomart
biomart ensemble ensemble gene id written 12 weeks ago by seta • 1.2k • updated 11 weeks ago by Biostar ♦♦ 20
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3
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197
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3
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BioMart : Retrieve set_gene_id (ENSG) and set_transcript_id (ENST) from SNPs rsIDs
rs biomart id snp written 11 weeks ago by amandinelecerfdefer • 20
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1
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183
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1
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biomaRt query Error "no upstream flank found"
biomart sequence written 3 months ago by shatabdisen40 • 10
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2
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224
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2
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Arabidopsis Gene ID Conversion (BioMart, CLC Genomics Workbench Output)
R biomart arabidopsis rna-seq written 3 months ago by jamesfischer047 • 10
4
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3
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170
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3
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Finding if dbSNP type in biomart
indel R biomart snp written 3 months ago by zakkaknadine • 10 • updated 3 months ago by zx8754 ♦ 7.9k
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2
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182
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2
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Biomart select rRNA sequences
rrna biomart written 3 months ago by vladikkorobeynyk • 0
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1
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165
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1
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List of genes TO starting and ending bps USING biomaRt R
R biomart written 3 months ago by Abdul Rafay Khan • 1.0k
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2
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209
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2
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Mysterious genes in my Biomart results (genes that were not part of original query)
R biomart package('biomart') written 4 months ago by adam.faranda • 10
2
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1
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228
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1
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why does my biomaRt query return inconsistent dataset lists?
ensembl biomart R written 5 months ago by adam.faranda • 10
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2
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2.4k
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2
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Getting all Ensembl protein lengths
ensembl biomart protein R written 4.1 years ago by Natasha Latysheva • 50 • updated 4 months ago by Shicheng Guo • 7.7k
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1
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2.1k
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7 follow
1
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Affymetrix Human Genome U133 Plus 2.0 Array - probe annotation with biomaRt
R biomart written 13 months ago by sujasubramanian • 50 • updated 4 months ago by Morris_Chair • 120
2
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1
answer
368
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1
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Entrez IDs disappear when using Biomart with GRCh37 Genome version
genome assembly biomart written 4 months ago by luisa • 10 • updated 4 months ago by Emily_Ensembl ♦ 18k
5
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2
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321
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2
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biomaRt getBM function report some NA
R biomart written 5 months ago by Bastien Hervé ♦ 4.4k
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4
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2.3k
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10 follow
4
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Mapping Ensembl Gene IDs with dot suffix
gene ensembl biomart bioconductor R written 17 months ago by mk • 90 • updated 5 months ago by zx8754 ♦ 7.9k
5
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1
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265
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1
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Error in biomart connection
R biomart ensembl written 5 months ago by shivangi.agarwal800 • 70
4
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1
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311
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1
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How to combine count matrix with mouse gene information from Ensemble using Biomart in R
ensembl biomart rna-seq R written 5 months ago by lamia_203 • 30 • updated 5 months ago by zx8754 ♦ 7.9k
4
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1
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343
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1
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Unable to query specific ensembl ID through biomaRt (R) or mygene (Python)
gene symbols ensembl biomart ensembl id mygene written 5 months ago by JourneyToAbyss • 80
7
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1
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313
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1
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Timeout on getBM() to retrieve snps from locations
R biomart getbm() timeout written 6 months ago by Corentin • 380 • updated 5 months ago by Biostar ♦♦ 20
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1
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234
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1
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Different results from biomaRt query and search in GTF
R biomart annotation transcripts hg19 written 5 months ago by lizaveta • 0 • updated 5 months ago by Emily_Ensembl ♦ 18k
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