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8
votes
1
answer
130
views
1
answer
How do you use Biomart to get info about genes that didn't originate from Ensembl?
genome ensembl biomart written 3 days ago by ericbrenner • 0 • updated 3 days ago by Jean-Karim Heriche ♦ 13k
3
votes
1
answer
140
views
1
answer
what is the best way annotate the genes in a data frame?
R biomart annotation data frame written 8 days ago by Lila M • 350 • updated 7 days ago by Kevin Blighe • 1.2k
2
votes
1
answer
135
views
1
answer
Fetch Phenotypes from Orthologues and GO terms for a NonModel organism Gene Set
ensembl biomart gene ontology written 17 days ago by DragonDNA • 50 • updated 12 days ago by Emily_Ensembl ♦ 13k
3
votes
1
answer
135
views
1
answer
Retrieving phytozome data using the R bioconductor package biomaRt
phytozome R bioconductor biomart written 16 days ago by Fabio Marroni • 1.4k • updated 16 days ago by Mike Smith • 250
0
votes
1
answer
158
views
1
answer
Ensembl id to GeneSymbol with biomart
biomart written 29 days ago by vignesh • 90 • updated 29 days ago by sandeep.amberkar18 • 0
1
vote
1
answer
159
views
1
answer
Using multiple filters in BiomaRt's getSequence
R biomart ensembl written 4 weeks ago by spiral01 • 60 • updated 4 weeks ago by Emily_Ensembl ♦ 13k
0
votes
0
answers
141
views
0
answers
How to get flanking exon coordinate based on gencode gtf/gff or biomart
gtf annotation biomart gff gencode written 5 weeks ago by ZheFrench • 50
1
vote
1
answer
187
views
1
answer
ensembl transcript id to gene symbol using biomart
R biomart ensembl written 5 weeks ago by hxlei613 • 70 • updated 5 weeks ago by Emily_Ensembl ♦ 13k
4
votes
1
answer
177
views
1
answer
Why some of the gene peptides returned by biomaRt do not have an asterisk in the end?
biomart peptide written 5 weeks ago by ebrudermanver • 40 • updated 5 weeks ago by Emily_Ensembl ♦ 13k
2
votes
1
answer
222
views
1
answer
Problem using biomaRt
ensembl biomart bioconductor error R written 6 weeks ago by cristian • 80
5
votes
2
answers
238
views
2
answers
Converting between Ensembl Versions
ensembl biomart written 7 weeks ago by jwhidd • 0 • updated 7 weeks ago by Mike Smith • 250
2
votes
1
answer
171
views
1
answer
LocusZoom and BioMart show different genes for SNP
biomart locuszoom written 8 weeks ago by alioniya • 0 • updated 8 weeks ago by Emily_Ensembl ♦ 13k
6
votes
3
answers
232
views
9 follow
3
answers
I have a list of 80 ensembl ids(gene stable ids) for which BioMart is not generating gene names.
ensembl biomart written 8 weeks ago by devina1404 • 0 • updated 8 weeks ago by xidianbill • 10
2
votes
2
answers
225
views
2
answers
Get one maximum UTR per gene
biomart 3' utr utr ucsc written 9 weeks ago by max • 0 • updated 8 weeks ago by Alex Reynolds ♦ 20k
13
votes
4
answers
11k
views
4
answers
Biomart Bioconductor - Retrieving All Entrezgenes Of Hsapiens_Gene_Ensembl
R biomart bioconductor written 5.2 years ago by sthait • 70 • updated 10 weeks ago by macmath • 110
1
vote
3
answers
1.8k
views
3
answers
Sort By Go Terms With R
R biomart go written 3.7 years ago by pchiang5 • 20 • updated 10 weeks ago by Biostar ♦♦ 20
2
votes
2
answers
167
views
2
answers
Convert GENCODE IDs to Ensembl - Ranged SummarizedExperiment
R biomart written 11 weeks ago by r_mvl • 10
1
vote
2
answers
172
views
2
answers
trying to identify all tss' for a mouse genomewide
bioconductor galaxy biomart rna-seq ucsc written 3 months ago by omd • 10 • updated 3 months ago by Charles Plessy • 2.2k
1
vote
1
answer
145
views
1
answer
Should ENSG IDs be annotated with the same patch as for the counts or with the latest release?
ensembl biomart rna-seq annotation written 3 months ago by lm687 • 40 • updated 3 months ago by kennethcondon2007 • 820
7
votes
2
answers
213
views
5 follow
2
answers
Does BioMart based go-terms contain any insignificant go-terms ?
R biomart gene ontology gene enrichment analysis written 4 months ago by arnetmit • 0 • updated 4 months ago by theobroma22 • 930
5
votes
1
answer
315
views
1
answer
Different results with edgeR when adding gene symbols
biomart rna-seq edger written 4 months ago by urmi208 • 30 • updated 4 months ago by MMa • 210
0
votes
0
answers
212
views
0
answers
transcript to gene mapping after sleuth run
R sleuth biomart rna-seq kallisto written 4 months ago by bioinfo8 • 90
2
votes
1
answer
220
views
1
answer
Retrieve all genes under a mammalian phenotype ontology term
R biomart go mammalian phenotype ontology written 4 months ago by eric.kern13 • 90 • updated 4 months ago by Mike Smith • 250
2
votes
2
answers
249
views
2
answers
vector dimension limit in biomaRt
R biomart written 4 months ago by difraiadomenico • 0 • updated 4 months ago by WouterDeCoster ♦ 21k
0
votes
1
answer
175
views
1
answer
Biomart error while convertint transcript ID.
biomart written 4 months ago by always_learning • 790
2
votes
2
answers
289
views
5 follow
2
answers
using biomaRt in R to annotate SNPs to Genes within 1000kb
R biomart bioconductor annotation written 4 months ago by Sheila • 170 • updated 4 months ago by Emily_Ensembl ♦ 13k
3
votes
2
answers
251
views
2
answers
Using BioMart in Ensembl to convert Affy-id to ENSG-genes
gene ensembl biomart rna-seq written 5 months ago by Anna • 0
3
votes
2
answers
223
views
5 follow
2
answers
Xenopus tropicalis Ensembl Gene IDs and Transcripts ID with BiomaRt
R biomart ensembl written 5 months ago by gaby_santos • 0 • updated 5 months ago by Mike Smith • 250
0
votes
1
answer
185
views
1
answer
Cannot get getBM to merge with original data to produce NA values
software error R biomart written 5 months ago by kiskamongoose • 0 • updated 5 months ago by Mike Smith • 250
1
vote
2
answers
275
views
2
answers
Ensembl Biomart Plant database
R bioconductor biomart written 5 months ago by #### • 140 • updated 5 months ago by Mike Smith • 250
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