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<prev • 206 results • page 1 of 7 • next >
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How to change Bioperl's Bio::SeqIO default sequence folding?
fasta fastq bioperl written 24 days ago by predeus • 360 • updated 24 days ago by Chris Fields • 1.8k
4
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1
answer
1.8k
views
1
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Extract Tree Topology From Ncbi Taxonomy Database
taxonomy bioperl written 4.9 years ago by Lhl • 720 • updated 4 weeks ago by Biostar ♦♦ 20
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0
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158
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0
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Bioperl - how can i print first result of result sequence per iteration?
ncbi protein sequence bioperl query written 8 weeks ago by Xylanaser • 10 • updated 8 weeks ago by Neilfws ♦ 47k
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1
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254
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1
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bioperl MapTiling error
bioperl blast written 7 months ago by Shyam • 80 • updated 10 weeks ago by Mark A. Jensen • 0
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1
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214
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1
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Perl script to retrieve species name from Swissprot
swissprot bioperl written 11 weeks ago by anicet.ebou • 0 • updated 11 weeks ago by Elisabeth Gasteiger • 1.2k
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147
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Using Bio::SeqIO to write with fasta format
fasta bioperl written 12 weeks ago by mahmood.nt • 0
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2
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253
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2
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Extracting 100bp flanking sites around aligned sequences from BLAST results using Biopython or Bioperl?
bioperl biopython written 12 weeks ago by rmartson • 10 • updated 12 weeks ago by jrj.healey • 2.4k
2
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1
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227
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1
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Get number of hits programatically for a advanced query search in UniprotKb
sequence retrieval uniprotkb bioperl biopython written 5 months ago by sr_karmarkar • 0 • updated 5 months ago by Elisabeth Gasteiger • 1.2k
2
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1
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197
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1
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bioperl Bio::SeqIO join + complement weirdness
bioperl written 5 months ago by Stephane Plaisance • 350
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1
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245
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5 follow
1
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Append two fasta sequences
fasta bioperl biopython written 5 months ago by tarakaramji • 10 • updated 5 months ago by Pierre Lindenbaum ♦ 98k
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5 follow
2
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How To Write Sequences To Fasta Format With No Linebreaks (Wide Format) Using Bioperl
perl fasta bioperl written 4.6 years ago by angel.roey • 0 • updated 5 months ago by Biostar ♦♦ 20
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comparative genomic analysis to obtain current status of each fungal genome existing databases and to analysis and differentiate between pathogen and endophyte in the existing fungal databases
fungi bioperl biopython pathogen endophyte written 6 months ago by shivkumar4589 • 10
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1
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363
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1
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How to get ambiguous sequence from ABIF file with perl ?
perl sequence bioperl abif ambiguous written 6 months ago by jawhar.saks • 10 • updated 6 months ago by Callum Humphreys • 0
1
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1
answer
431
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1
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Bio::Tools::Run::RemoteBlast Error: 403 Forbidden
bioperl written 10 months ago by rplana6 • 0 • updated 7 months ago by jyotilakhanimgsu • 10
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2
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351
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2
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Align a position weight matrix against a sequence by using bioperl
position weight matrix pwm alignment bioperl written 10 months ago by francisco.abad • 0
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768
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How do I get Genbank files by using wiki gene ids in bioperl?
bioperl genbank written 2.3 years ago by anp375 • 80 • updated 10 months ago by Biostar ♦♦ 20
9
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1
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1.7k
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1
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Tutorial: How To Install BioPerl Without Root Privileges in Ubuntu/Linxu
tutorial bioperl written 16 months ago by Shicheng Guo • 4.5k
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2
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1.3k
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2
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bio::db::sam installation error
bioperl samtools written 12 months ago by ramesh.8v • 150 • updated 12 months ago by Charles Plessy • 2.2k
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609
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2
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Is it any website that allows you to test your Bioperl code???
bioperl written 18 months ago by Andrea • 30 • updated 12 months ago by jaypatel.ani • 10
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660
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Fasta alignment to Tajima's D and population statistics
tajima popgen alignment bioperl statistics written 12 months ago by matthew.m.hernandez • 20
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4
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500
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4
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Bioperl printing part of sequence using subseq()
bioperl written 14 months ago by riaasuddin • 0
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1
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1
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Bio::Searchio For Hmmer3 Output (Best Domain E-Value And I-Evalue)
bioperl hmmer written 3.6 years ago by greentailedmouse • 40 • updated 14 months ago by Biostar ♦♦ 20
2
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1
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572
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1
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How can I retrieve the Protein 'name' using my BLAST tab delimited results?
perl gene bioperl protein blast written 16 months ago by Tawny • 110 • updated 15 months ago by DCGenomics • 290
4
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1
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1
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How to retrieve record from Uniprot with BioPerl
id bioperl uniprot retrieve written 16 months ago by tpapamitrou • 0 • updated 16 months ago by SES ♦ 7.9k
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514
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StandAloneBlastPlus: Can't find executable for 'blastdbcmd'
bioperl blast rna-seq written 16 months ago by gfm255 • 0 • updated 16 months ago by Biostar ♦♦ 20
2
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1
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423
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1
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BioPerl Remote Blast with Gene ID only ?
bioinformatics bioperl blast written 16 months ago by ksi216 • 40 • updated 16 months ago by SES ♦ 7.9k
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6
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16 follow
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Extract A Group Of Fasta Sequences From A File
fasta python bioperl biopython perl written 7.2 years ago by Kyle • 60 • updated 17 months ago by cpcantalapiedra • 140
1
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514
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1
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Polytomies and tree comparison
phylogeny polytomy tree-comparison bioperl ape written 17 months ago by Lee Katz • 2.8k • updated 17 months ago by jhc • 2.5k
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465
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Scripting method to parse fastq diploid consensus sequence bins based on quality
fastq bioperl biopython parsing written 17 months ago by memory_donk • 210
6
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3
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How to download multiple sequences from a database (ie Genbank) in Perl given a text file that contains the Ids?
perl database bioperl download multiple sequences written 18 months ago by Andrea • 30 • updated 18 months ago by SES ♦ 7.9k
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