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<prev • 214 results • page 1 of 8 • next >
7
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4
answers
7.3k
views
7 follow
4
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Error In Sam To Bam Conversion
next-gen samtools perl rnaseq bioinformatics bioperl written 6.6 years ago by SK • 110 • updated 4 months ago by vivekr • 10
1
vote
0
answers
216
views
0
answers
VelvetOptimiser fails to operate
assembly bioperl written 4 months ago by El Niño • 10 • updated 4 months ago by h.mon ♦ 27k
2
votes
2
answers
3.1k
views
2
answers
Genbank To Fasta Conversion
bioperl written 6.5 years ago by shilpy • 10 • updated 4 months ago by Biostar ♦♦ 20
7
votes
3
answers
2.5k
views
6 follow
3
answers
Extract Tree Topology From Ncbi Taxonomy Database
taxonomy bioperl written 6.9 years ago by Lhl • 730 • updated 4 months ago by peterlageweg603 • 10
0
votes
1
answer
2.1k
views
1
answer
BioPerl script getting hung up and running very slowly.
dn/ds bioperl rna-seq written 5.2 years ago by ddusan1 • 50 • updated 7 months ago by Biostar ♦♦ 20
3
votes
1
answer
233
views
1
answer
How to alter the program to a universal format converter
perl bioseq format converter bioperl written 7 months ago by Mimmi Ahlmén • 10 • updated 7 months ago by JC ♦ 8.7k
8
votes
2
answers
2.3k
views
2
answers
Can I Get An All Uppercase Dna Sequence From Bio::Seq Without Uc?
perl bioperl written 9.1 years ago by Flies • 100 • updated 8 months ago by Biostar ♦♦ 20
0
votes
0
answers
484
views
0
answers
How to modify the header of a perl script to use bioperl in the environment?
perlscript bioperl written 11 months ago by saadleeshehreen • 70
5
votes
1
answer
409
views
1
answer
about bioperl script for extracting sequences from a fasta file(get orf output file) with ids which has less than 30 amino acids
python bioperl rna-seq written 12 months ago by yaminivadapally • 0 • updated 12 months ago by Nitin Narwade • 420
4
votes
1
answer
865
views
1
answer
Count the number of sequences in fasta file using perl
perl bioinformatics bioperl fasta written 13 months ago by koushikayaluri • 20 • updated 13 months ago by ivan.antonov • 80
20
votes
2
answers
3.2k
views
2
answers
Perl Script - For 3Rd Codon G Or C ?
perl codon sequence bioperl translation written 9.3 years ago by Ads-Osu • 60 • updated 13 months ago by RamRS ♦ 24k
11
votes
3
answers
4.7k
views
5 follow
3
answers
How Can I Save Bioperl Sequence Nested Features In Genbank Or Embl Format?
data sequence bioperl written 9.5 years ago by Ryan Thompson • 3.4k • updated 13 months ago by RamRS ♦ 24k
2
votes
1
answer
2.0k
views
1
answer
Ensembl Compara Perl Api Taxon->Classification Error
perl ensembl api bioperl written 9.5 years ago by Cassj • 1.3k • updated 13 months ago by RamRS ♦ 24k
78
votes
10
answers
12k
views
17 follow
10
answers
Perl Or Python For Comparative Genomics?
python bioperl biopython comparative written 9.0 years ago by Dave Lunt • 2.0k • updated 16 months ago by lakhujanivijay ♦ 4.5k
0
votes
1
answer
1.8k
views
1
answer
Install bioperl module Bio::DB::Sam on Ubuntu 17.10
software error bioperl written 18 months ago by marongiu.luigi • 380 • updated 18 months ago by h.mon ♦ 27k
0
votes
0
answers
453
views
0
answers
bioperl fasta indexing problem with non model genome sequence
mrna fasta bioperl reference index written 19 months ago by shreyasibiswas88 • 30
6
votes
3
answers
3.7k
views
3
answers
Find Sequences In Fasta File From List Of Id'S
bioperl biopython written 6.5 years ago by arronslacey • 260 • updated 20 months ago by santhoshhegde278 • 0
2
votes
0
answers
629
views
0
answers
News: Community Feedback - OBF mailing list issues
bioperl biopython biojava news emboss bioruby written 22 months ago by Chris Fields • 2.1k
1
vote
1
answer
3.0k
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1
answer
[Solved] Exception: Bio::Root::Exception When Using Sma3S For Annotation
annotation bioperl written 6.3 years ago by lzsph • 70 • updated 23 months ago by Biostar ♦♦ 20
2
votes
1
answer
631
views
1
answer
How to change Bioperl's Bio::SeqIO default sequence folding?
fasta fastq bioperl written 2.1 years ago by predeus • 1.2k • updated 2.1 years ago by Chris Fields • 2.1k
0
votes
0
answers
610
views
0
answers
Bioperl - how can i print first result of result sequence per iteration?
ncbi protein sequence bioperl query written 2.2 years ago by Xylanaser • 20 • updated 2.2 years ago by Neilfws ♦ 48k
0
votes
1
answer
737
views
1
answer
bioperl MapTiling error
bioperl blast written 2.7 years ago by Shyam • 130 • updated 2.3 years ago by Mark A. Jensen • 0
0
votes
1
answer
859
views
1
answer
Perl script to retrieve species name from Swissprot
swissprot bioperl written 2.3 years ago by anicet.ebou • 140 • updated 2.3 years ago by Elisabeth Gasteiger • 1.6k
0
votes
0
answers
671
views
0
answers
Using Bio::SeqIO to write with fasta format
fasta bioperl written 2.3 years ago by mahmood.nt • 0
2
votes
2
answers
1.3k
views
2
answers
Extracting 100bp flanking sites around aligned sequences from BLAST results using Biopython or Bioperl?
bioperl biopython written 2.3 years ago by rmartson • 20 • updated 2.3 years ago by Joe ♦ 14k
2
votes
1
answer
636
views
1
answer
Get number of hits programatically for a advanced query search in UniprotKb
sequence retrieval uniprotkb bioperl biopython written 2.5 years ago by sr_karmarkar • 0 • updated 2.5 years ago by Elisabeth Gasteiger • 1.6k
2
votes
1
answer
719
views
1
answer
bioperl Bio::SeqIO join + complement weirdness
bioperl written 2.5 years ago by Stephane Plaisance • 410
7
votes
1
answer
830
views
5 follow
1
answer
Append two fasta sequences
fasta bioperl biopython written 2.5 years ago by tarakaramji • 10 • updated 2.5 years ago by Pierre Lindenbaum ♦ 123k
2
votes
2
answers
4.6k
views
5 follow
2
answers
How To Write Sequences To Fasta Format With No Linebreaks (Wide Format) Using Bioperl
perl fasta bioperl written 6.6 years ago by angel.roey • 0 • updated 2.5 years ago by Biostar ♦♦ 20
0
votes
0
answers
611
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0
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comparative genomic analysis to obtain current status of each fungal genome existing databases and to analysis and differentiate between pathogen and endophyte in the existing fungal databases
fungi bioperl biopython pathogen endophyte written 2.6 years ago by shivkumar4589 • 10
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