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3
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76
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Biopython Entrez Esearch FILTER
esearch biopython written 6 days ago by maxininfa • 0 • updated 6 days ago by finswimmer ♦ 7.0k
1
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0
answers
84
views
0
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AttributeError: module 'Bio.SeqIO' has no attribute 'parse'
biopython written 8 days ago by oooyueooo • 10
2
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1
answer
77
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1
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How do I download and install DSSP?
python biopython dssp written 13 days ago by westin.kosater • 0 • updated 13 days ago by jrj.healey ♦ 8.8k
7
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1
answer
125
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1
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Using STDIN with BioPython's PDB methods
pdb i/o stdin biopython pipes written 13 days ago by jrj.healey ♦ 8.8k
1
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1
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3.5k
views
1
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Pairwise2 Biopython Module Get The Score In Variable
python alignment biopython written 5.0 years ago by Maria • 150 • updated 15 days ago by tslakshmipriya90 • 0
5
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4
answers
167
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4
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Trying to use regular expressions to edit a PDB text file.What am I doing wrong?
python biopython regex written 19 days ago by westin.kosater • 0 • updated 19 days ago by jrj.healey ♦ 8.8k
1
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1
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129
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1
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How can I use biopython to extract each alpha carbon from a PDB file?
pdb python biopython written 20 days ago by westin.kosater • 0
5
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1
answer
6.2k
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5 follow
1
answer
Pairwise Sequence Alignment Using Pairwise2 Module With Biopython
pairwise python alignment biopython written 7.0 years ago by Mkl • 100 • updated 20 days ago by RamRS ♦ 19k
5
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2
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1.4k
views
2
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BioPython: how to edit a fasta file to include a large deletion
assembly next-gen sequence biopython alignment written 2.7 years ago by skbrimer • 500 • updated 22 days ago by Leonor Palmeira ♦ 3.6k
2
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1
answer
225
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1
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Esearch results not matching up with online results
esearch biopython entrez written 5 months ago by cha27cha • 0 • updated 22 days ago by RamRS ♦ 19k
11
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1
answer
169
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6 follow
1
answer
How to use Biopython for fetching metadata of NCBI/GenBank/RefSeq assembly identifiers?
ncbi assembly entrez biopython fetch written 27 days ago by O.rka • 70 • updated 27 days ago by arup • 660
0
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0
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88
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0
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Multi Blast NCBIWWW Filtering Human Genome and excluding Models and Uncultured sample sequences
ncbiwww biopython blast written 27 days ago by malj • 10
3
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2
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184
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2
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Blast Multi queries output
biopython blast written 4 weeks ago by malj • 10
7
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5
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11k
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11 follow
5
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how to parse blast output using biopython
biopython blast written 4.6 years ago by camilla.borgonuovo • 10 • updated 4 weeks ago by malj • 10
2
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1
answer
486
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1
answer
CAI in python: SeqUtils.CodonUsage vs CAI package
sequtils codon biopython cai written 11 months ago by grassostefan • 0 • updated 4 weeks ago by jblumens • 0
0
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0
answers
110
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0
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Take out the GENES from DNA sequence while using FRMAES.
dna to genes in python python 3x biopython written 4 weeks ago by abdullahqamer92 • 0
0
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0
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102
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0
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Extracting Flanking Regions using Biopython
bedtools biopython written 5 weeks ago by LindoNkambule • 0 • updated 5 weeks ago by jrj.healey ♦ 8.8k
3
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1
answer
442
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5 follow
1
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biopython esearch not giving all children taxIDs
ncbi biopython entrez written 14 months ago by yarmda • 0 • updated 7 weeks ago by tsrmhathesh • 0
2
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1
answer
152
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1
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Strand not working in biopython efetch
efetch biopython strand written 8 weeks ago by tim.ivanov.92 • 0 • updated 8 weeks ago by jrj.healey ♦ 8.8k
0
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1
answer
157
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1
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Extract genbank features inside a given range
biopython genbank written 9 weeks ago by tim.ivanov.92 • 0 • updated 9 weeks ago by jrj.healey ♦ 8.8k
0
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0
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109
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0
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Target sequence from exonerate output
exonerate biopython written 9 weeks ago by tim.ivanov.92 • 0
1
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1
answer
137
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1
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Problems with extracting genes from a genbank file using biopython
gene genome biopython python written 10 weeks ago by beginner_problem • 10 • updated 10 weeks ago by Sej Modha ♦ 3.8k
12
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3
answers
6.5k
views
5 follow
3
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Getting Genomic Sequences And Phastcons Scores Using Python From Ensembl/Ucsc?
ucsc python sequence biopython ensembl written 8.4 years ago by User 9996 • 790 • updated 10 weeks ago by RamRS ♦ 19k
13
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1
answer
3.5k
views
1
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Extract Sequence From Record And Feature Location
feature biopython written 8.4 years ago by Atalon1 • 40 • updated 10 weeks ago by RamRS ♦ 19k
5
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1
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2.4k
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1
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Blastp And Biopython
biopython blast written 8.5 years ago by Jordan Willis • 10 • updated 10 weeks ago by RamRS ♦ 19k
12
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3
answers
3.0k
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7 follow
3
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Phylip App'S Without Emboss Tool
python phylogenetics biopython written 8.5 years ago by Thaman • 3.2k • updated 10 weeks ago by RamRS ♦ 19k
8
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1
answer
3.0k
views
1
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Passing Alignment Parameters Through Clustalwcommandline
python clustalw multiple biopython written 8.5 years ago by Thaman • 3.2k • updated 10 weeks ago by RamRS ♦ 19k
13
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6
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4.5k
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7 follow
6
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Clustalw Alignment Problem
alignment clustalw biopython written 8.5 years ago by Thaman • 3.2k • updated 10 weeks ago by anyjjhmx • 0
32
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5
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2.9k
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8 follow
5
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I Wonder Why It Is So Important To Use Seq Objects In Stead Of Plain Ol' Strings In Biopyton?
python tutorial biopython seq written 8.5 years ago by Vlinxify • 90 • updated 10 weeks ago by RamRS ♦ 19k
19
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4
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2.8k
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8 follow
4
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Simple Fasta Parsing Is Not Simple.
fasta python biopython file written 8.6 years ago by Vlinxify • 90 • updated 10 weeks ago by RamRS ♦ 19k
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