Latest
Open
RNA-Seq
ChIP-Seq
SNP
Assembly
Tutorials
Tools
Jobs
Forum
Planet
All »
Home
Log In
Showing: biopython • reset
or   Classic search
<prev • 746 results • page 1 of 25 • next >
1
vote
2
answers
71
views
2
answers
Sequence date of Refseq genomes
genome python ref-seq biopython sequencing written 1 day ago by alyosamah • 0 • updated 14 hours ago by 5heikki ♦ 7.2k
1
vote
0
answers
79
views
0
answers
Passing multiple fasta files to local blast
python blast alignment biopython blastp written 5 days ago by New2programming • 0
1
vote
0
answers
66
views
0
answers
BLAST taxid to complete linage using biopython on a local machine.
taxonomy biopython blast parsng written 6 days ago by lp.vandergouw • 0 • updated 6 days ago by jrj.healey • 3.8k
0
votes
0
answers
63
views
0
answers
Method for limiting sequence input into blastsearches
biopython blast written 7 days ago by paul.edward.malone • 0
1
vote
1
answer
83
views
1
answer
How do I get full text AND MeSH terms from Entrez on the PMC database in biopython?
python e-utilities pubmed entrez biopython written 14 days ago by Syncrossus • 0
6
votes
0
answers
147
views
5 follow
0
answers
Different alignment results between Emboss Needle and Biopython pairwise2
needleman–wunsch alignment biopython written 20 days ago by markd • 10 • updated 20 days ago by a.zielezinski ♦ 8.2k
5
votes
1
answer
163
views
1
answer
Select records from fasta file by SeqIO (Biopython)
fasta sequence biopython seqio written 4 weeks ago by dmitri.ivanovsky • 0 • updated 4 weeks ago by a.zielezinski ♦ 8.2k
1
vote
1
answer
213
views
1
answer
How to parse a dat file into FASTA format?
fasta dat file biopython uniprot written 5 weeks ago by yuevine • 0 • updated 4 weeks ago by Elisabeth Gasteiger • 1.4k
3
votes
1
answer
106
views
1
answer
How to replace a stretch of a sequence with N's in a fasta file
fasta biopython written 5 weeks ago by Grinch • 10 • updated 5 weeks ago by h.mon ♦ 13k
3
votes
1
answer
105
views
1
answer
Biopython pairwise2 alignment: is one_alignment the best alignment?
alignment biopython written 5 weeks ago by nick • 70 • updated 5 weeks ago by rayoub • 80
4
votes
2
answers
231
views
5 follow
2
answers
Reverse complement for multiple fastq files
biopython written 5 weeks ago by teleos27 • 0 • updated 5 weeks ago by genomax ♦ 46k
2
votes
1
answer
158
views
1
answer
pairwise2 extended_protein alphabet
pairwise2 python sequence biopython alignment written 6 weeks ago by aocken • 0 • updated 6 weeks ago by a.zielezinski ♦ 8.2k
0
votes
0
answers
76
views
0
answers
How can I obtain specimen_voucher information for each accession number in a python dictionary prepared with biopython?
py genbank record biopython python written 7 weeks ago by sw.knudsen • 0
0
votes
0
answers
954
views
0
answers
working with promoter sequence of tomato using biopython
tomato promoter biopython written 2.2 years ago by kws15 • 40 • updated 8 weeks ago by premraj.preeti • 0
0
votes
0
answers
120
views
0
answers
Biopython NCBIXML Parsing - Field Parameter
xml parse biopython ncbixml written 9 weeks ago by maximilian.mayerhofer • 20
36
votes
5
answers
21k
views
20 follow
5
answers
Convert Bam File To Fasta File
fasta bam biopython conversion written 7.1 years ago by Sazzad • 40 • updated 9 weeks ago by WouterDeCoster ♦ 27k
3
votes
1
answer
192
views
1
answer
slicing reads of a multi-fasta file and writing them to a new file
fasta python biopython written 9 weeks ago by Florian BERNARD • 20 • updated 9 weeks ago by WouterDeCoster ♦ 27k
3
votes
1
answer
141
views
1
answer
Parsing Standalone Blast XML Output with Biopython on Linux
xml parse biopython blast written 9 weeks ago by maximilian.mayerhofer • 20 • updated 9 weeks ago by Pierre Lindenbaum ♦ 106k
22
votes
2
answers
9.0k
views
9 follow
2
answers
Blast Two Sequences
alignment biopython blast written 6.0 years ago by flitrfli • 80 • updated 9 weeks ago by santhoshhegde278 • 0
0
votes
0
answers
212
views
0
answers
I want to extract all Nitrogen of amino acid LYS and O5' Oxygen of DNA which are less than 5 angstrom apart by using Biopython from pdb file 1ca5
python biopython written 3 months ago by aditya.k311998 • 0 • updated 10 weeks ago by Biostar ♦♦ 20
7
votes
1
answer
262
views
1
answer
Importing Uniprot into BioSQL using BioPython takes years (nearly literally!)
biopython biosql uniprot written 10 weeks ago by Jan • 20
6
votes
3
answers
2.7k
views
3
answers
Find Sequences In Fasta File From List Of Id'S
bioperl biopython written 5.0 years ago by arronslacey • 220 • updated 10 weeks ago by santhoshhegde278 • 0
0
votes
2
answers
280
views
2
answers
Removing all stop codons from Sequence Record using Biopython
biopython written 11 weeks ago by ckan91 • 10
0
votes
2
answers
1.1k
views
2
answers
Download complete bacterial genomes and associated plasmid sequences from NCBI
ncbi biopython genbank download written 19 months ago by wanderingstefan • 20 • updated 12 weeks ago by tdmurphy • 80
4
votes
1
answer
224
views
1
answer
Pass query and subject as string instead of files to blastn
python biopython blast written 12 weeks ago by juan.crescente • 10 • updated 12 weeks ago by a.zielezinski ♦ 8.2k
4
votes
3
answers
282
views
5 follow
3
answers
How to count fasta sequences efficiently using (or not ) biopython
fasta python biopython written 3 months ago by juan.crescente • 10 • updated 12 weeks ago by yhoogstrate • 50
0
votes
4
answers
3.2k
views
6 follow
4
answers
Removing Gapped Columns From A Multiple Sequence Alignment.
alignment biopython written 4.3 years ago by microbeatic • 80 • updated 12 weeks ago by Prakki Rama • 2.1k
0
votes
1
answer
206
views
1
answer
biopython's local alignment get start and end position of both sequences
pairwise smithwaterman alignment biopython written 3 months ago by juan.crescente • 10 • updated 3 months ago by jrj.healey • 3.8k
10
votes
1
answer
4.7k
views
9 follow
1
answer
Get locus_tag list from gene list using genbank file and Biopython
genome annotation biopython genbank written 3.7 years ago by spezza • 40 • updated 3 months ago by Biostar ♦♦ 20
2
votes
1
answer
176
views
1
answer
parse xml proteinpredict files
proteinpredict parse biopython xml written 3 months ago by Biojl • 1.6k • updated 3 months ago by Pierre Lindenbaum ♦ 106k
<prev • 746 results • page 1 of 25 • next >
Recent Votes
Recent Locations • All »
  • United Kingdom, 4 minutes ago
  • United States, 6 minutes ago
  • United States, 8 minutes ago
  • Brazil/Porto Alegre/UFRGS, 8 minutes ago
Recent Awards • All »
Recent Replies
Content
Help
Access
Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 1174 users visited in the last hour