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3
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1
answer
63
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1
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Are there wrappers for blastdb_aliastool, blastdbcmd in Biopython Blast module? Any alternatives?
biopython blast written 2 days ago by bsmith4133 • 20 • updated 2 days ago by Istvan Albert ♦♦ 84k
1
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0
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62
views
0
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Concatenating multiple nexus file in a supermatrix using Biopython
nexus concatenation biopython written 5 days ago by CUCIO199 • 10
3
votes
1
answer
116
views
1
answer
Changing output format for hamming distance of FASTA sequences (using Biopython)
fasta python hamming_distance biopython sequence written 9 days ago by nameuser • 10 • updated 5 days ago by Joe ♦ 17k
0
votes
0
answers
68
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0
answers
NCT seracchi in PubMed via Entrez (python)
python nct biopython statistics written 11 days ago by federico.nutarelli • 0 • updated 11 days ago by Joe ♦ 17k
1
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0
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96
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0
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How to convert FASTA to NEXUS in Python
fasta nexus biopython convert written 13 days ago by adrian18_07 • 0
0
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0
answers
105
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0
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'blastp' is not recognized as an internal or external command using Bio.Blast.Applications
biopython blast written 19 days ago by perstet • 0
6
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2
answers
135
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2
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Incorrect sequence retrieved by coordinates
fasta python biopython pysam written 20 days ago by Igor Filippov • 0 • updated 19 days ago by Istvan Albert ♦♦ 84k
0
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1
answer
89
views
1
answer
Microbial protein BLAST
microbial proteins blast biopython databases written 23 days ago by orpita.d • 0 • updated 21 days ago by user_without_id • 140
0
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0
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118
views
0
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Parsing GFF with biopython throws error
gff biopython written 23 days ago by Juliofdiaz • 130
1
vote
1
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2.8k
views
1
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Ncbi Entrez Server Issues
ncbi protein dbsnp biopython entrez written 7.4 years ago by heath • 20 • updated 23 days ago by Biostar ♦♦ 20
0
votes
0
answers
94
views
0
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How to make consensus sequences for a list?
consensus biopython written 26 days ago by adrian18_07 • 0
1
vote
1
answer
149
views
1
answer
Counting mismatched characters from sequences from a fasta file in comparison to a reference sequence
fasta python biopython written 26 days ago by nameuser • 10 • updated 26 days ago by Joe ♦ 17k
2
votes
1
answer
134
views
1
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Removal of primers from matched sequences
biopython written 5 weeks ago by adrian18_07 • 0 • updated 29 days ago by Joe ♦ 17k
2
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0
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172
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0
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How to use entrezpy and Biopython Entrez libraries to access ClinVar data from genomic position of variant
python3 entrezpy clinvar biopython entrez written 5 weeks ago by Damianos P. Melidis • 20
1
vote
1
answer
109
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5 follow
1
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How to retrive sequnce from fasta file by using start and end point data from xl?
python biopython written 5 weeks ago by akashbala0 • 10 • updated 5 weeks ago by geek_y ♦ 11k
3
votes
1
answer
108
views
1
answer
bio python, sequence retrieval
python biopython written 5 weeks ago by Balatheskulter • 0
1
vote
0
answers
139
views
0
answers
Biopython SeqIO.parse not functioning for all entries in a seq
seqio biopython seqio.parse genbank files written 12 weeks ago by mvhanson • 0 • updated 5 weeks ago by Biostar ♦♦ 20
1
vote
2
answers
147
views
2
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BioPython write combined nexus files
nexus biopython written 6 weeks ago by nmkn • 0
0
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0
answers
151
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0
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Cant make blastn work using biopython and NCBIWWW qblast, any thoughts?
ncbiwww biopython error qblast written 3 months ago by ejeide1 • 0 • updated 6 weeks ago by Biostar ♦♦ 20
0
votes
1
answer
114
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1
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Using Biopython Entrez to get protein accession from mRNA accesion
ncbi mrna refseq biopython protein written 7 weeks ago by speycast • 0 • updated 6 weeks ago by genomax ♦ 87k
0
votes
1
answer
99
views
1
answer
Problem with Bio.codonalign.codonseq.cal_dn_ds in Biopython
ds/dn biopython codonalign written 7 weeks ago by jameshunterbr • 0
6
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0
answers
155
views
5 follow
0
answers
biopython entrez lost connection?
ncbi python taxonomy biopython written 9 weeks ago by flogin • 250
1
vote
0
answers
111
views
0
answers
Problem with Unicode while using BioPython on Windows
python phylo phylogenetics biopython windows written 8 weeks ago by williamsam • 0
1
vote
1
answer
123
views
1
answer
How to index SeqRecord objects in the list?
biopython index written 10 weeks ago by adrian18_07 • 0 • updated 9 weeks ago by Joe ♦ 17k
0
votes
0
answers
111
views
0
answers
Error reading XML from Homologene efetch()
biopython written 10 weeks ago by Axel.Kowald • 0
0
votes
0
answers
124
views
0
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Pairwise2 for seq_record in list
pairwise2 biopython written 10 weeks ago by adrian18_07 • 0 • updated 10 weeks ago by RamRS ♦ 28k
0
votes
0
answers
88
views
0
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Searching for regex matching sequence upstream and downstream a BLAST hit
genome python microbial biopython regex written 10 weeks ago by piotrkoper86 • 0
2
votes
1
answer
152
views
1
answer
How can I run a Biopython qblast search targeting a specific set of organisms?
biopython blast written 11 weeks ago by sviatoslav.kendall • 770 • updated 11 weeks ago by zorbax • 130
2
votes
1
answer
1.9k
views
1
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BioPython: collapsing nodes on tree if node in list.
phylogenetics biopython phyllo written 5.5 years ago by atapee • 10 • updated 11 weeks ago by Leonni1503 • 0
6
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0
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3.1k
views
6 follow
0
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Update Multiple Sequences From Fasta File And Write Them As A New Fasta In Biopython
biopython written 7.7 years ago by Abdullah • 100 • updated 11 weeks ago by Biostar ♦♦ 20
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