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<prev • 808 results • page 1 of 27 • next >
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Issue with running Codeml using Biopython
paml python biopython codeml linux written 2 days ago by laurenmee17 • 0
3
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1
answer
89
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1
answer
Trim sequences based on alignment in python
python alignment biopython written 6 days ago by Shred • 80 • updated 6 days ago by jrj.healey ♦ 9.6k
2
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70
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Output all atoms within a sphere of 3 A of the center of Trypsine
pdb bioinformatics protein biopython python written 7 days ago by a4appy23 • 0 • updated 7 days ago by finswimmer ♦ 8.8k
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2
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235
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I am having a problem with getting all the list of amino acid values from dict in python!
python protein biopython dictionary written 10 days ago by macadamopetrus • 0 • updated 9 days ago by jrj.healey ♦ 9.6k
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102
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Problem with getting branch support for phylogenetic tree
python biopython written 9 days ago by mdsiddra • 20
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1
answer
128
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1
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Bootstrap function biopython
biopython written 29 days ago by mdsiddra • 20 • updated 9 days ago by Eric T. • 2.3k
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1
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120
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1
answer
Get just GenBank record while downloading genome with Biopython
genome biopython entrez written 15 days ago by Shred • 80 • updated 14 days ago by vkkodali • 850
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1
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1.7k
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1
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Biopython error message: Protein FASTA provided for nucleotide sequence
software error fasta biopython blast written 23 months ago by biotim • 0 • updated 27 days ago by marcobgg4 • 10
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124
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Bio.PDB parsing PDB file
pdb biopython written 28 days ago by Gunilla • 0
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91
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Creating text file as a temporary file in python
python biopython written 28 days ago by mdsiddra • 20
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1
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Biopython Entrez difference between nuccore and nucleotide databases
biopython entrez written 3.3 years ago by johnbradley2008 • 20 • updated 29 days ago by mschmidt • 0
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1
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157
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1
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How to change name of species in FASTA file with BioPython
fasta python help question biopython written 4 weeks ago by Daphnia3000 • 0 • updated 4 weeks ago by gb • 570
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133
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5 follow
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How to get all transcript and CDS from gene_id in biopython?
gene biopython written 5 weeks ago by ishenweiyan • 10
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1
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1.8k
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1
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Bio.Iupac Problem In Biopython
python biopython written 7.8 years ago by Saifalharthi • 20 • updated 6 weeks ago by Biostar ♦♦ 20
2
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0
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191
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p53 cancer patient RNA seq and protein sequence data
tcga biopython rna-seq p53 written 6 weeks ago by sxp358 • 10
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88
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Randomized method in Biopython
biopython written 7 weeks ago by mdsiddra • 20
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102
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Hierarchy order of tree branches using Biopython
phylogenetics biopython written 7 weeks ago by mdsiddra • 20
3
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1
answer
151
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1
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Biopython Entrez Esearch FILTER
esearch biopython written 8 weeks ago by maxininfa • 0 • updated 8 weeks ago by finswimmer ♦ 8.8k
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170
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AttributeError: module 'Bio.SeqIO' has no attribute 'parse'
biopython written 9 weeks ago by oooyueooo • 10
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1
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219
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1
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How do I download and install DSSP?
python biopython dssp written 9 weeks ago by westin.kosater • 0 • updated 9 weeks ago by jrj.healey ♦ 9.6k
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1
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203
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1
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Using STDIN with BioPython's PDB methods
pdb i/o stdin biopython pipes written 9 weeks ago by jrj.healey ♦ 9.6k
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1
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3.6k
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1
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Pairwise2 Biopython Module Get The Score In Variable
python alignment biopython written 5.1 years ago by Maria • 150 • updated 10 weeks ago by tslakshmipriya90 • 0
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4
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211
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Trying to use regular expressions to edit a PDB text file.What am I doing wrong?
python biopython regex written 10 weeks ago by westin.kosater • 0 • updated 10 weeks ago by jrj.healey ♦ 9.6k
1
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1
answer
217
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1
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How can I use biopython to extract each alpha carbon from a PDB file?
pdb python biopython written 10 weeks ago by westin.kosater • 0
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1
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5 follow
1
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Pairwise Sequence Alignment Using Pairwise2 Module With Biopython
pairwise python alignment biopython written 7.2 years ago by Mkl • 100 • updated 10 weeks ago by RamRS ♦ 20k
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2
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1.4k
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2
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BioPython: how to edit a fasta file to include a large deletion
assembly next-gen sequence biopython alignment written 2.9 years ago by skbrimer • 520 • updated 11 weeks ago by Leonor Palmeira ♦ 3.6k
2
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1
answer
265
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1
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Esearch results not matching up with online results
esearch biopython entrez written 7 months ago by cha27cha • 0 • updated 11 weeks ago by RamRS ♦ 20k
11
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1
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247
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6 follow
1
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How to use Biopython for fetching metadata of NCBI/GenBank/RefSeq assembly identifiers?
ncbi assembly entrez biopython fetch written 11 weeks ago by O.rka • 70 • updated 11 weeks ago by arup • 720
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Multi Blast NCBIWWW Filtering Human Genome and excluding Models and Uncultured sample sequences
ncbiwww biopython blast written 11 weeks ago by malj • 10
3
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2
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255
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2
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Blast Multi queries output
biopython blast written 12 weeks ago by malj • 10
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