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<prev • 995 results • page 1 of 34 • next >
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Pairwise2 Gap penalty function for insertion errors
python alignment biopython sequencing written 2 days ago by trinityduke100 • 10
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2
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183
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5 follow
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Getting alignments with lower scores on Biopython
genome python sequence biopython written 5 days ago by trinityduke100 • 10 • updated 4 days ago by Mensur Dlakic • 8.1k
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104
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Pairwise2 Alignment Gap Penalties
python alignment biopython sequencing written 5 days ago by trinityduke100 • 10 • updated 4 days ago by Mark • 860
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410
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Has someone experience with the KOBAS (v. 3) standalone enrichment software?
standalone enrichment biopython kobas kegg written 10 months ago by t.bergmann • 0 • updated 4 days ago by CHMpositive • 0
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How to extract nucleotide sequence of select genes from a text file with Genbank-like format
nucleotide parse antismash biopython genbank written 20 months ago by mac03pat • 30 • updated 5 days ago by Biostar ♦♦ 20
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33
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RNA Distance map
rna protein biopython distance written 6 days ago by Zinoon • 0
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87
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Is there a package that outputs gene coordinates given a list of Ensembl IDs?
gene ensembl biopython written 6 days ago by dustyl259 • 0 • updated 6 days ago by ATpoint ♦ 44k
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329
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Is there a function to tabulate exact match seq scoring using pwm weight table for Biopython?
python biopython written 25 days ago by ah07seven • 0
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Biopython newick treeio removes comments
phylo.write biopython written 6 weeks ago by Bill Pearson • 1.0k • updated 6 weeks ago by rpolicastro ♦ 3.2k
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How to count the number of codons in a frame or order using the equation?
python biopython code written 8 weeks ago by projetoic • 0 • updated 7 weeks ago by Jorge Amigo ♦ 12k
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170
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Runmode = -2 in Biopython PAML impossible ?
python3 paml codeml biopython written 8 weeks ago by Chvatil • 50
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136
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Finding motifs in fasta file with Biopython
forum biopython written 8 weeks ago by lorenzinip • 0 • updated 8 weeks ago by Medhat ♦ 8.8k
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How to extract calculated RSA values from dssp and its corresponding residue?
pdb commandline rsa biopython dssp written 8 weeks ago by tpm • 10
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Biopython tools online
biopython written 8 weeks ago by nobu.kim66 • 10
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1
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How to limit/filter BLAST results using NcbiblastnCommandline
ncbiblastncommandline biopython blast written 3.3 years ago by yarmda • 40 • updated 8 weeks ago by Biostar ♦♦ 20
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147
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1
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Biopython fuctions questions
biopython bioinformática written 10 weeks ago by marscal.rs • 0 • updated 9 weeks ago by Joe ♦ 18k
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2
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232
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2
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Joining multiple query keys in entrez Efetch
ncbi efetch entrez biopython written 10 weeks ago by timothy.kirkwood • 10
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7 follow
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Trying to separate different chains of a PDB file into separate files. Biopython gives an error
python biopython written 20 months ago by westin.kosater • 50 • updated 10 weeks ago by manu.llanos • 10
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414
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1
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ValueError: Need a Nucleotide or Protein alphabet. Trying to write a Genbank file and getting error
seqio.write biopython genbank bio.alphabet written 10 weeks ago by Fishy_DNA • 10 • updated 10 weeks ago by RCB • 0
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1
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172
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1
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Need help with Pairwise Alignment module in iterating over the alignment
python sequence alignment biopython written 11 weeks ago by naman.misanthropist • 0 • updated 11 weeks ago by a.zielezinski ♦ 9.4k
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7 follow
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How To Download Swiss-Prot .Dat File From Uniprot
python biopython uniprot written 7.2 years ago by kevinjspring • 20 • updated 11 weeks ago by bazghazia7 • 0
2
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1
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212
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1
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Biopython not installed correctly error when trying to call python script from R on a MacOS
biopython written 12 weeks ago by devarts • 20
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2
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196
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Biopython - AttributeError: when downloading from genbank
software error biopython written 12 weeks ago by Wilber0x • 10 • updated 12 weeks ago by Shred • 230
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180
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Distance matrix based on the whole input alignment
python alignment biopython written 12 weeks ago by anasjamshed1994 • 60 • updated 12 weeks ago by ATpoint ♦ 44k
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178
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Why cai_for_gene method substracts one from cai_length in biopython
python biopython written 3 months ago by yamasakih • 0 • updated 3 months ago by Biostar ♦♦ 20
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Retrieve / Generate Naive PDB test structures for neighbor search algorithm (Biopython)
python biopython bio.pdb written 3 months ago by jonbroad15 • 0
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1
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161
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1
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biopython script to alingn mutiple sequences
python biopython written 3 months ago by anasjamshed1994 • 60 • updated 3 months ago by Istvan Albert ♦♦ 86k
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1
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264
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Parsing SRA summary using Biopython Entrez
python entrez biopython sra xml written 3 months ago by kmyers2 • 40 • updated 3 months ago by Istvan Albert ♦♦ 86k
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245
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Free PMC Article access through FTP service - NCBI
ncbi entrez biopython pmc pubmed written 3 months ago by vighnesh202 • 0
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207
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error while executing panX script (KeyError: 'db_xref').
genome python linux biopython bioinformatics written 4 months ago by Kumar • 40 • updated 3 months ago by Biostar ♦♦ 20
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