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Recent Replies
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C: DBI connect failed: orthomclLoadBlast by
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are you sure you are using the correct credentials to access this remote SQL server? and set the ...
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jrj.healey ♦ 11k
You've clearly munged your fasta files if you actually read that error. You have a non-nucleotide...
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They have no corresponding samples with which to compare, so it's unclear if any change is actual...
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C: Run RepeatMasker problems by
lieven.sterck ♦ 4.2k
Yes, that will likley be so, as that points the the repeatmasker binary (== the program itself) (...
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C: Number of read with fastq file name by
cpad0112 ♦ 11k
input fastq: $ cat test.fq @SEQ_ID GATTTGGGGTTCAAAGCAGTATCGATCAAATAGTAAATCCATTTGTTC...
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A: Any Free Software Similar To Sequencher? by
Antonio R. Franco • 4.0k
If you intention is to map long sequences (EST, contigs,..) to the genome, take a look to [GMAP][...
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bioExplorer ♦ 3.7k
The answer is cutadapt -a AGATCGGAAGAG -A AGATCGGAAGAG -o tr_R1.fastq -p tr_R2.fastq R1.fas...
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A: Number of read with fastq file name by
bioExplorer ♦ 3.7k
#!/bin/bash for i in `ls *.fq`; do file_name=$(basename -s .fq $i); printf "$file_n...
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A: Number of read with fastq file name by
JC ♦ 7.6k
for i in *.fq; do echo "$( echo $i | perl -pe 's/_.*//') $( grep -c '@' $i)"
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A: Does strange fastQC GC content report cause a problem for WES analysis? by
JC ♦ 7.6k
If this is WES, you can expect a deviation for your curve, think on codon usage preference ...
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C: VCF INFO AC field for failed snps by
finswimmer ♦ 11k
Hello https://www.biostars.org/u/34497/ , what you are showing is not valid vcf file. So the que...
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C: mRNA.Exp[[page.Counter]] : subscript out of bounds by
chetana • 40
Hi, Were you able to fix that error? I've just come across the error and never really used Fireb...
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