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Is read trimming needed for WGBS (bisulfite) data?

wgbs alignment trimming bisufite written 6 months ago by Chris Miller ♦ 21k • updated 6 months ago by Devon Ryan ♦ 95k

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Recent Replies

C: How to fetch a nucleotide sequence of a certain CDS from linux terminal by using by genomax ♦ 83k
Absolutely. Use `epost` method : $ epost -db nuccore -input id_file | elink -target pr...
C: How to fetch a nucleotide sequence of a certain CDS from linux terminal by using by arriyaz.nstu • 0
Hi, your code is just amazing. Thank you very much. Is it possible to download the CDS from more ...
C: How to extract certain CDS from a GenBank file in linux terminal by cpad0112 ♦ 13k
For nucleotide sequence, please try this: from Bio import SeqIO from Bio.SeqRecord impor...
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If your target sequence is a Fasta file, you will have new-lines every 80-100 nt, that will break...
C: Mapping fasta/fastq reads against a long fasta sequence using grep by genomax ♦ 83k
What have you tried so far then? Use reads to search since your reference is longer.
A: How to fetch a nucleotide sequence of a certain CDS from linux terminal by using by genomax ♦ 83k
Using [EntrezDirect][1] (sequence truncated for space) : $ esearch -db nuccore -query "AP017...
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Well ~25% of your STAR only genes are snRNAs, and there are only, like 9 snRNAs, but they are exp...
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I think you'd be better off with design ~ Form + Stage. (Order does not matter if you specify th...
C: How can I donwload a KEGG pathwat by zion22 • 40
thanks but it didn't work, because the xml file conflicts with Pathvisio, so I need .Gpml, or .ma...
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Thank you for your suggestion. I have figure out by using add read group as following command.. ...
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The additional comments from ATpoint and Alex Reynolds helped me clarify my understanding. I see...
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These seem promising, I'll read them, thank you.

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