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written 3.5 years ago by
ATpoint ♦ 44k
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3.5 years ago by
Alex Reynolds ♦ 31k
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written 5.3 years ago by
vladimir.khramkov • 10
• updated
5.3 years ago by
Damian Kao ♦ 15k
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Recent Replies
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C: Error :[[<- defined for objects of type "S4" only for subclasses of environment by
Apoorva • 270
Yes it is. Because there are no issues displaying a FeaturePlot or a table of differentially expr...
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C: Non-uniform p-value histogram in differential analysis by
srhic • 30
Thanks, I will try DiffBind as well. Also just to clarify my histograms are similar to D in the l...
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C: Annotating two columns at the same time by
rpolicastro ♦ 3.2k
Can you include some example data, and an example of what you want the output to look like?
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C: Error :[[<- defined for objects of type "S4" only for subclasses of environment by
rpolicastro ♦ 3.2k
Is your Seurat data being properly loaded into the Shiny app on the remote system?
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C: Sequence Duplication Levels and Clumpify by
GenoMax ♦ 94k
Sequence duplicates can arise by a couple of different ways. By PCR amplification (can only be id...
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C: Non-uniform p-value histogram in differential analysis by
Jean-Karim Heriche ♦ 24k
As suggested in the linked article, the likely reason is violation of the assumptions of the stat...
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C: Non-uniform p-value histogram in differential analysis by
rpolicastro ♦ 3.2k
If your p-value distribution does look like D in that article, there might be something wrong wit...
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C: Annotating two columns at the same time by
Dunois • 490
Could you please illustrate what you'd like to do with some example data (and the expected output)?
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C: Problems with FDR in RNA-seq analysis by
rpolicastro ♦ 3.2k
From looking at the histogram I wouldn't expect a large number of significant values, but it's li...
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C: Expression thresholds for enrichment analysis of RNA-Seq data by
Papyrus • 620
Yes I understand, although in my opinion this kind of approach seems to me to be more typical of ...
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C: Error in Blast+ by
lieven.sterck ♦ 9.5k
check the memory usage. This error might be linked to the memory usage? what are the specs of you...
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C: Using Deseq2 for RNA-seq analysis of 4 different groups of cells by
Carlo Yague ♦ 5.5k
I suggest that you start with this excellent [DESeq2 tutorial][1]. My suggestions above will fit ...
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