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<prev • 2,173 results • page 1 of 73 • next >
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How to specify/calculate subject coverage of the alignment (alignment of query[protein sequence] and subject[Nucleotide sequence]) in tBLASTn?
bioinformatics alignment tblastn blast written 5 days ago by Dineshkumar K • 10
2
votes
1
answer
2.5k
views
1
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BLASTp in python (solved)
python blastp blast written 3.4 years ago by albert.castella.teruel • 0 • updated 5 days ago by sambioinfo2018 • 0
3
votes
1
answer
3.0k
views
1
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Filter command-line BLAST results by organism
genome alignment taxonomy blast written 4.4 years ago by jdromano2 • 10 • updated 5 days ago by Biostar ♦♦ 20
6
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3
answers
1.8k
views
7 follow
3
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How to perform bidirectional BLAST?
bidirectional blast written 21 months ago by Paul • 70 • updated 7 days ago by Biostar ♦♦ 20
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152
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Can you use blastn only with one sequence from the database?
alignment blast written 8 days ago by Char20773 • 0
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0
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2.0k
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0
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Get ASCII-format PSSM from web PSIBLAST
pssm psiblast blast written 3.5 years ago by fvillanelo • 0 • updated 10 days ago by gaiboyan23 • 0
1
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2
answers
131
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2
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Aligning two DNA sequences with nBLAST
ncbi igb blast written 12 days ago by sj93 • 10 • updated 11 days ago by pltbiotech_tkarthi • 100
1
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1
answer
100
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1
answer
Can I align two DNA sequences using BLAST from command line?
ncbi genome sequence blast snp written 11 days ago by sj93 • 10 • updated 11 days ago by nsmi8446 • 90
1
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1
answer
60
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1
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What kind of BLAST to use in Gene Ontology?
alignment protein gene ontology blast written 11 days ago by l.souza • 70 • updated 11 days ago by Bill Pearson • 850
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1
answer
65
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1
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How to dissolve blastn alignment result predicted locally
alignment sequence blast written 13 days ago by Neu • 10 • updated 13 days ago by i.sudbery ♦ 4.0k
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0
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1.7k
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0
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Convert Blast-output fotmat 5 (xml) to tabular format
blast written 2.2 years ago by nut_B • 10 • updated 13 days ago by Biostar ♦♦ 20
0
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0
answers
79
views
0
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BLAST filter by identity percentage and query cover
query cover identity percentage blast written 15 days ago by dllopezr • 40
2
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0
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96
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0
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Blasting an assembly against a single gene of interest
gene assembly next-gen blast genome written 16 days ago by AGE • 20 • updated 16 days ago by h.mon ♦ 24k
0
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1
answer
89
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1
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Extract 10 matches in BLAST
extract blast written 16 days ago by gkalgus • 0 • updated 16 days ago by h.mon ♦ 24k
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0
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133
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0
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Finding a suitable Independent Variable for a Protein sequence homology analysis
homology sequences blast sequence homology written 29 days ago by minasmayth • 0 • updated 17 days ago by Biostar ♦♦ 20
1
vote
1
answer
191
views
1
answer
How to generate multiple sequence alignments from BLAST(stand alone BLAST) hits output result?
phylogeny blast amino acid sequence msa written 20 days ago by Dineshkumar K • 10 • updated 19 days ago by gb • 600
0
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1
answer
82
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1
answer
How to specify Cut-off/parameters of sequence identity > 70% and query length > 40% in BLAST command line?
alignment homologoues search blast written 19 days ago by Dineshkumar K • 10 • updated 19 days ago by gb • 600
1
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0
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103
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0
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Error with makeblastdb from UniProt fasta file: no sequences were found
makeblastdb fasta uniprot blast error written 19 days ago by mafernandez • 0
4
votes
1
answer
118
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1
answer
How do I get a single nucleotide from my BLAST alignment?
R blast sequence biopython alignment written 19 days ago by suvratha • 20 • updated 19 days ago by 5heikki ♦ 8.2k
7
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2
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112
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5 follow
2
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Filtering BLAST results
python alignment blast written 24 days ago by flogin • 20
0
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0
answers
78
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0
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Is there a way to obtain taxonomy IDs of organisms with associated protein sequences?
ncbi bioinformatics blast written 26 days ago by lpragasa • 0 • updated 26 days ago by gb • 600
0
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0
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93
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0
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BLAST Database error: No GIs were found in BLAST database
next-gen blast written 27 days ago by anasofiamoreira94 • 30 • updated 27 days ago by Bastien Hervé ♦ 3.6k
0
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0
answers
1.2k
views
0
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mpiBLAST Score and E-value Calculation
sequence blast written 4.0 years ago by Lakshman Rao • 0 • updated 29 days ago by Biostar ♦♦ 20
21
votes
2
answers
6.6k
views
5 follow
2
answers
Is Blastall Only Using Blast, Not Blast+?
blast written 7.7 years ago by Ken • 150 • updated 4 weeks ago by Biostar ♦♦ 20
2
votes
0
answers
131
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0
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Only one hit per query on blastn?
blast genomics written 4 weeks ago by bioguy • 20
1
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2
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117
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2
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Advice on Blast output
format unix blast written 4 weeks ago by stacy734 • 30
0
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1
answer
155
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1
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Discrepancy between E() Values in Blastp Search - HELP
e() value protein e-value blast blastp written 10 weeks ago by minasmayth • 0 • updated 5 weeks ago by mhampton • 0
0
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0
answers
118
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0
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What kind of protein matrix substitution use for blastX divergent sequences
matrix homology diamond blast written 5 weeks ago by Darill • 20
0
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0
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92
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0
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BlastX outcomes frame+1
blast written 5 weeks ago by hsabrina135 • 0
5
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5
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864
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5
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VariantCalling with single sanger read
indel snps variantcalling blast written 2.6 years ago by Amirosein • 70 • updated 5 weeks ago by trausch • 1.2k
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