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3
votes
1
answer
101
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1
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Comparing the WG sequenced isolate against the other same genus isolates on the public database
wgs snps blast alignment bacteria written 8 days ago by bioinforesearchquestions • 250 • updated 1 day ago by bioguy • 40
4
votes
1
answer
115
views
1
answer
HMMER vs OrthoMCL vs Blast: When to use what for finding gene groups
similarity gene families blast orthomcl written 2 days ago by Ace • 60 • updated 2 days ago by Mensur Dlakic • 540
0
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0
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98
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0
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Blastn against multiple fna files --neither makeblastdb nor for loop works
ncbi fasta blast fna blastn written 5 weeks ago by Metaxo • 0 • updated 4 days ago by h.mon ♦ 27k
0
votes
0
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85
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0
answers
NCBI blastp fails with "Invalid choice selection: NCBI-Seqalign::Score.value.real"
ncbi blast peptide written 5 days ago by claudius.mueller • 0
1
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1
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1.7k
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1
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Is there any tool to convert blastx format from tabular to xml for feeding it to blast2go?
assembly alignment blast rna-seq sequencing written 4.1 years ago by seta • 1.2k • updated 13 days ago by Shahzad • 10
2
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0
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100
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0
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Reciprocal blast commandline
tool blast written 13 days ago by baurumon • 10 • updated 13 days ago by ATpoint ♦ 21k
0
votes
1
answer
103
views
1
answer
How to create PSSM matrix
pssm psiblast blast written 24 days ago by sepehr.salsabili • 0 • updated 21 days ago by fishgolden • 390
0
votes
0
answers
86
views
0
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Query empty when performing psiblast
blast written 23 days ago by kashbaker13 • 0
0
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0
answers
112
views
0
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PSI-BLAST core dumped
core dumped psi blast blast segmentation fault written 25 days ago by sepehr.salsabili • 0
1
vote
1
answer
126
views
1
answer
What is 'reverse' blast, and when to use it?
rps-blast reverse blast blast written 26 days ago by ravila • 0 • updated 26 days ago by Mensur Dlakic • 540
1
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0
answers
121
views
0
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blastp command line not reporting hits
software error blast written 28 days ago by egerrick • 0 • updated 28 days ago by RamRS ♦ 23k
1
vote
1
answer
87
views
1
answer
how to use blastpt between isoforms of the same genes?
homology blast written 29 days ago by star • 190 • updated 29 days ago by Mensur Dlakic • 540
1
vote
1
answer
91
views
1
answer
mpiblast returning an error with a specific FASTA file - Unable to open files
blastx mpiblast blast written 29 days ago by Light92 • 0
1
vote
0
answers
95
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0
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Placing SNPs within updated genome assembly
genome assembly snps blast vmatch written 29 days ago by pigsnstuff • 0
0
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0
answers
115
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0
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PSI-BLAST out put is empty
blast output psiblast written 4 weeks ago by sepehr.salsabili • 0 • updated 4 weeks ago by h.mon ♦ 27k
2
votes
1
answer
3.1k
views
10 follow
1
answer
Ncbi-Blast+ Version 2.2.23 'Make' Error
blast error repeatmasker written 7.4 years ago by Heidi • 10 • updated 4 weeks ago by abhijit.synl • 50
2
votes
0
answers
145
views
0
answers
Working with redundant information on BLAST output
filter python blast dictionary written 5 weeks ago by flogin • 150
0
votes
1
answer
116
views
1
answer
error when running blastn
alignment blast blastn written 4 weeks ago by stephaniepierson83 • 20 • updated 4 weeks ago by brian.fristensky • 80
1
vote
0
answers
94
views
0
answers
Cluster query for BLAST
alignment blast written 4 weeks ago by vini.guerra87 • 0
2
votes
1
answer
136
views
1
answer
Help making a blast database with longer sequence IDs
mkblastdb fasta sequence protein blast written 5 weeks ago by ravila • 0
0
votes
0
answers
96
views
0
answers
Filtering tblastn results
genome gene alignment tblastn blast written 5 weeks ago by juan.crescente • 20
0
votes
0
answers
129
views
0
answers
BLAST: find short complementary between two sequences
alignment blast written 5 weeks ago by QYSunny • 0
16
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0
answers
4.1k
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9 follow
0
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Tool: BBSketch - A Tool for Rapid Sequence Comparison
minhash sketch bbmap tool blast written 2.5 years ago by Brian Bushnell ♦ 16k • updated 5 weeks ago by silas.kieser • 0
3
votes
2
answers
623
views
2
answers
Blastx versus nr?
blastx long_time computing_hours blast written 2.2 years ago by Buffo • 1.6k • updated 6 weeks ago by Biostar ♦♦ 20
6
votes
1
answer
191
views
1
answer
How to download the complete database Nucleotide collection (nr/nt)?
nr/nt collection blast download written 7 weeks ago by marongiu.luigi • 380 • updated 7 weeks ago by Fabio Marroni • 2.3k
7
votes
2
answers
223
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2
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What is the difference between blastx and tblastn?
ncbi bioinformatics sequence blast assembly written 9 weeks ago by Dineshkumar K • 10 • updated 7 weeks ago by tim.nollan25 • 0
11
votes
1
answer
5.5k
views
1
answer
What Is The Lowest E-Value In Blast When Ncbi Rounds It Down To 0 (Zero)?
blast written 7.3 years ago by a.zielezinski ♦ 8.7k
1
vote
1
answer
182
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5 follow
1
answer
blastn not returning all the expected results
alignment blast written 8 weeks ago by selarch • 0 • updated 8 weeks ago by Michael Dondrup ♦ 46k
0
votes
0
answers
76
views
0
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Understanding a blast output
xml blast written 8 weeks ago by carolina.santiago.t • 0 • updated 8 weeks ago by lakhujanivijay ♦ 4.3k
0
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0
answers
115
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0
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Filtering for Percentage of identity (sequence identity: pident, %) from tblastn results
sequence pident blast filtering tblastn written 8 weeks ago by endretoth • 0
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