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<prev • 2,069 results • page 1 of 69 • next >
2
votes
2
answers
1.8k
views
2
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Threshold over percentage identity in blastn
gene alignment next-gen blast written 2.2 years ago by Tony • 10 • updated 1 day ago by gb • 50
0
votes
0
answers
89
views
0
answers
Generate Consensus Sequence from Pairwise Alignment
consensus alignment blast written 2 days ago by kspata • 10
2
votes
1
answer
94
views
1
answer
Blastn Gives Different Results Based on Database Size
alignment sequence blast written 4 days ago by khv • 0 • updated 4 days ago by lieven.sterck • 1.7k
2
votes
1
answer
103
views
1
answer
BioPython BLAST Records HSP Sequences
ncbi biopython blast sequences written 7 days ago by samvanstroud • 0 • updated 7 days ago by Gungor Budak • 200
0
votes
0
answers
68
views
0
answers
How to create position specific scoring matrix using standalone blast
pssm blast written 9 days ago by apurvamehta2015 • 0
1
vote
0
answers
73
views
0
answers
blast database name in output
blast written 12 days ago by gb • 50
1
vote
0
answers
141
views
0
answers
BLAST taxid to complete linage using biopython on a local machine.
taxonomy biopython blast parsng written 9 weeks ago by lp.vandergouw • 0 • updated 13 days ago by Biostar ♦♦ 20
1
vote
0
answers
466
views
0
answers
how to makeblastdb with taxon id's
makeblastdb blast written 8 months ago by gb • 50 • updated 14 days ago by Biostar ♦♦ 20
0
votes
0
answers
58
views
0
answers
Tax4Fun - blast/MEGAN input
tax4fun metagenomic blast megan written 15 days ago by tomaz-biostars • 0
4
votes
1
answer
131
views
1
answer
Strategies for identifying as many homologs as possible
homology phylogenetics est msa blast written 15 days ago by michael • 0 • updated 15 days ago by Michael Dondrup ♦ 44k
6
votes
2
answers
147
views
6 follow
2
answers
Blast many read sequences
reads alignment contamination blast written 15 days ago by zoegward • 40 • updated 15 days ago by Vijay Lakhujani ♦ 2.5k
7
votes
0
answers
171
views
14 follow
0
answers
Parsing Blast output on linux/unix
python parse blast output linux written 19 days ago by chagross • 40 • updated 19 days ago by shira.zaltsman • 0
0
votes
0
answers
135
views
0
answers
Identifying database from which a hit sequence came from after blastdb_aliastool
blast blastdb_aliastool written 11 weeks ago by navela78 • 50 • updated 20 days ago by Biostar ♦♦ 20
4
votes
2
answers
493
views
5 follow
2
answers
OrthoMCL issue with BLAST and mySQL
blastall ortholog clustering orthomcl blast mysql written 5 months ago by merwright • 0 • updated 24 days ago by hudak7 • 0
5
votes
1
answer
167
views
1
answer
makeblastdb won't run in terminal (Mac OS X)
ncbi alignment blast sequencing written 28 days ago by alexille5640 • 10 • updated 28 days ago by WouterDeCoster ♦ 29k
0
votes
0
answers
132
views
0
answers
NcbiblastpCommandline , not working properly in python but commands work on console
blast biopython blastp ncbicommandline python 3.0 written 8 weeks ago by New2programming • 0 • updated 28 days ago by Biostar ♦♦ 20
0
votes
0
answers
173
views
0
answers
Redundant species in nr database
blastp nr homologs blast written 29 days ago by kritika.tauras • 0 • updated 29 days ago by genomax ♦ 49k
3
votes
1
answer
2.7k
views
1
answer
blastn execution error, the correct command line format
nucleotide sequence blast written 3.4 years ago by vigneshprbh37 • 20 • updated 29 days ago by Biostar ♦♦ 20
1
vote
0
answers
180
views
0
answers
Fungi genomes: which database should I use?
genome ensembl jgi fungi blast written 9 weeks ago by tlorin • 240 • updated 4 weeks ago by Biostar ♦♦ 20
11
votes
1
answer
1.1k
views
6 follow
1
answer
Tool: Sequence Database curator
fastq sequence tool blast sequencing written 16 months ago by Eslam Samir • 100
0
votes
0
answers
117
views
0
answers
BLAST RNASeq assembled fastq file to a gene sequence
gene rna-seq blast written 4 weeks ago by Smandape • 60
3
votes
4
answers
184
views
6 follow
4
answers
Forum: How do you use BLAST?
forum blast sequence searching blat written 5 weeks ago by Emily_Ensembl ♦ 15k • updated 5 weeks ago by Vijay Lakhujani ♦ 2.5k
2
votes
1
answer
111
views
1
answer
Generating Web BLAST output from local BLAST
blast written 5 weeks ago by dylan.lawrence • 10 • updated 5 weeks ago by Pierre Lindenbaum ♦ 108k
0
votes
0
answers
125
views
0
answers
No output nr file after running makedb
diamond blast makedb written 5 weeks ago by Toto26 • 10
0
votes
0
answers
158
views
0
answers
Get taxid information in blast output (issue using a python program)
python diamond blast written 5 weeks ago by Toto26 • 10
0
votes
1
answer
114
views
1
answer
blastdbcmd issue
db database nr blast written 6 weeks ago by Toto26 • 10 • updated 6 weeks ago by genomax ♦ 49k
3
votes
3
answers
10.0k
views
3
answers
How Can I Download The Results From An Ncbi Blast Search?
ncbi alignment blast genbank written 6.7 years ago by John • 750 • updated 6 weeks ago by Biostar ♦♦ 20
5
votes
0
answers
155
views
0
answers
blastn errors following building of database
makeblastdb blast blastn written 9 weeks ago by rbronste • 160 • updated 6 weeks ago by Biostar ♦♦ 20
1
vote
0
answers
98
views
0
answers
Converting blastn output to VCF (for SNPs): what is the quickest way?
vcf xml blast snp convert written 7 weeks ago by Macspider • 2.4k
6
votes
1
answer
141
views
1
answer
Removal of gene sequences from genome.
genome gff blast written 7 weeks ago by Candah • 60 • updated 7 weeks ago by Pierre Lindenbaum ♦ 108k
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