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<prev • 2,266 results • page 1 of 76 • next >
7
votes
3
answers
1.3k
views
5 follow
3
answers
Makeblast db with more sequences in fasta format
blastdb blast written 2.9 years ago by marghe08 • 10 • updated 19 hours ago by david.prihoda • 10
1
vote
0
answers
64
views
0
answers
How to obtain all accession.version identifiers for a BLAST database using ENTREZ
elink entrez blast written 4 days ago by massa.kassa.sc3na • 150
1
vote
2
answers
4.3k
views
2
answers
Blastdbcmd Cant Find Protein Database
blast written 6.6 years ago by bioinfo • 740 • updated 8 days ago by Biostar ♦♦ 20
5
votes
1
answer
79
views
1
answer
BlastX on command line
command line blast terminal written 8 days ago by marongiu.luigi • 420
1
vote
0
answers
645
views
0
answers
Starch Biosynthesis Pathway Reconstruction in Cassava using comparative and functional genomics
genome alignment sequence blast gene written 2.8 years ago by poojaharshan133 • 0 • updated 9 days ago by zx8754 ♦ 8.3k
0
votes
1
answer
80
views
1
answer
Identifying very closely related proteins
orthologs alignment homologs blast written 10 days ago by Baby Bioinformatician • 70 • updated 9 days ago by Mensur Dlakic • 2.1k
1
vote
0
answers
61
views
0
answers
How compare proteomes of two species?
proteome alignment blast written 11 days ago by saber mohammadi • 10
6
votes
2
answers
1.1k
views
2
answers
how to get database of plants in FASTA format from uniprot
blast written 2.2 years ago by majeedaasim • 40 • updated 12 days ago by ricardoguerreiro2121 • 20
2
votes
1
answer
60
views
1
answer
blastp augustus annotation against protein database
augustus annotation blast written 12 days ago by Grey Monroe • 10 • updated 12 days ago by lieven.sterck ♦ 6.2k
0
votes
0
answers
82
views
0
answers
Mimicing the Blastn "lineage report" from online Blast service
blast written 13 days ago by mschmid • 110
0
votes
1
answer
102
views
1
answer
Retrieving sequence from NCBI
ncbi list blast written 20 days ago by ashaneev07 • 10 • updated 19 days ago by JC ♦ 9.1k
1
vote
0
answers
107
views
0
answers
Tracing back files used in CLC Genomics?
clc fisher blast2go blast rna-seq written 21 days ago by jjrin • 10
4
votes
1
answer
104
views
1
answer
Error: legacy_blast.pl command not found
blast written 21 days ago by venura • 10 • updated 21 days ago by ATpoint ♦ 25k
2
votes
1
answer
2.1k
views
1
answer
Makeblastdb - parallel speed ups?
blast written 4.8 years ago by jeremy.cox.2 • 90 • updated 22 days ago by Biostar ♦♦ 20
0
votes
0
answers
100
views
0
answers
Aligning short oligos containing Ns to a genome
alignment blast bwa written 22 days ago by dacotahm • 20
0
votes
1
answer
148
views
1
answer
How to get organism description from BLAST output using biopython
python biopython blast blast output parsing written 24 days ago by martinsindelar0077 • 0 • updated 23 days ago by massa.kassa.sc3na • 150
2
votes
1
answer
117
views
1
answer
Searching NCBI database for proteins with specific C terminus
protein blast written 4 weeks ago by gm434 • 0 • updated 25 days ago by Elisabeth Gasteiger • 1.6k
1
vote
1
answer
184
views
1
answer
How to solve the different number of hits from tblastn when I use the option -parse_seqids in makeblastdb command?
makeblastdb tblastn blast written 7 weeks ago by carina2817 • 10
8
votes
7
answers
15k
views
8 follow
7
answers
Intall local BLAST in Ubuntu
local system requirement blast ubuntu written 2.3 years ago by Kanchana Sankalpa • 10 • updated 28 days ago by persikan • 0
1
vote
1
answer
130
views
1
answer
Error: NCBI C++ Exception - Invalid choice selection: NCBI-Seqalign::Score.value.real
ncbi software error blast terminal seqalign written 6 weeks ago by mrmrwinter • 0 • updated 28 days ago by joines • 20
1
vote
1
answer
317
views
1
answer
NCBI blastp fails with "Invalid choice selection: NCBI-Seqalign::Score.value.real"
ncbi blast peptide written 12 weeks ago by claudius.mueller • 0 • updated 28 days ago by joines • 20
5
votes
2
answers
2.8k
views
2
answers
Creating A Dna Sequence Database Locally For Blastplus
makeblastdb blast written 9.3 years ago by Eric Normandeau ♦ 10k • updated 4 weeks ago by Biostar ♦♦ 20
0
votes
1
answer
112
views
1
answer
Batching PSIBLAST calls and obtaining individual PSSMs
pssm psiblast blast written 4 weeks ago by wjn0 • 0 • updated 4 weeks ago by Mensur Dlakic • 2.1k
1
vote
0
answers
142
views
0
answers
Extract information from txt
archeogenetics python sequence blast written 5 weeks ago by harmadikemil • 0
1
vote
0
answers
132
views
0
answers
When to use masking in BLAST?
masking blast written 5 weeks ago by DNAlias • 0
1
vote
0
answers
175
views
0
answers
Legacy BLAST and BLAST+ equivalence
psiblast blast written 5 weeks ago by wjn0 • 0
16
votes
0
answers
4.5k
views
9 follow
0
answers
Tool: BBSketch - A Tool for Rapid Sequence Comparison
minhash sketch bbmap tool blast written 2.8 years ago by Brian Bushnell ♦ 16k • updated 5 weeks ago by silas.kieser • 0
55
votes
3
answers
401
views
3
answers
How to determine species of paired-end .fastq files (low mapping rates and inconsistent findings)
sendsketch spades bacteria kraken blast written 5 weeks ago by LRStar • 190 • updated 5 weeks ago by Mensur Dlakic • 2.1k
0
votes
0
answers
128
views
0
answers
How to get hit DNA sequences from psi-tBLASTn?
psitblastn blast written 6 weeks ago by carina2817 • 10
0
votes
0
answers
107
views
0
answers
Biopython BLAST: how to include minimum coverage in the parameters?
biopython blast coverage written 6 weeks ago by lea.picard • 0 • updated 6 weeks ago by Biostar ♦♦ 20
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