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23
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3
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192
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8 follow
3
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Forum: Versioning of Blast DB and Reproducible Research
database reproducible research forum blast written 5 days ago by makrez • 40 • updated 5 days ago by Mensur Dlakic • 5.4k
2
votes
1
answer
60
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1
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How can I run a Biopython qblast search targeting a specific set of organisms?
biopython blast written 6 days ago by sviatoslav.kendall • 770 • updated 5 days ago by zorbax • 100
0
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1
answer
44
views
1
answer
Makeblastdb refseq viral protein sequence (Blast db v5)
refseq blast written 6 days ago by guillaume.rbt • 780
3
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1
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2.4k
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1
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makeblastdb error: Error: (803.7) [makeblastdb] Blast-def-line-set.E.seqid.E.local.str Bad char [0xC3] in string at byte 45
makeblastdb ncbi blast written 3.0 years ago by m.rhodes • 30 • updated 8 days ago by flyingfinger • 10
1
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1
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66
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1
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Running Blastall Before MCL for Paralog Clustering
mcl comparative genomics blast written 8 days ago by brittanymlebert • 10 • updated 8 days ago by Mensur Dlakic • 5.4k
4
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2
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627
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5 follow
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BLAST Database error: Error pre-fetching sequence data
software error assembly blast ncbi written 4 months ago by elesbb91 • 20 • updated 9 days ago by wangshuo0782 • 0
1
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1
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108
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1
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BLAST Database error: No alias or index file found for nucleotide database [nr] in search path
blastn blast written 14 days ago by mushin.hudoushin • 10
1
vote
1
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80
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1
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How to decide what BLAST settings to use when searching for functional genes in a metagenome
metagenomics microbial blast sequencing written 12 days ago by crystal4 • 0 • updated 12 days ago by Mensur Dlakic • 5.4k
1
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1
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69
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1
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BLAST Database creation error: is not a valid local ID
software error database alignment blast rna-seq written 12 days ago by tianshenbio • 40
5
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0
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111
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0
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Standalone Blast+; Automating searches, Blastn formatting, interpretation
ncbi nucleotide blast sequencing written 13 days ago by s.jayne.henderson • 0
0
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1
answer
63
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1
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BLAST and GFF script to find locations of SNPs
gff blast script snp written 13 days ago by Kiki_01 • 0
6
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2
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219
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5 follow
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(BLAST) Why different e-values if I query a sequence alone, or together with other sequences?
e-value blast written 4 weeks ago by johan • 90
0
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0
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100
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0
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how to map every SNP flanking sequences to a reference genome?
alignment sequence snp blast written 6 weeks ago by blacktomato27 • 50 • updated 17 days ago by Biostar ♦♦ 20
1
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1
answer
79
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1
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BLASTn output format start position larger than stop position
blastn output blast outfmt 6 blast blastn written 20 days ago by nataliagru1 • 40 • updated 20 days ago by Sej Modha ♦ 4.7k
4
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1
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140
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1
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Bioinformatics: I have a list of Protein RefSEQ IDs returned by BLAST and I need to convert them to Entrez Gene IDs
R entrez gene id blast written 22 days ago by tom5 • 0
0
votes
0
answers
78
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0
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Why the evalues are different from online blast when using blastn -remote option
remote blastn blast written 23 days ago by top5 • 10 • updated 23 days ago by lieven.sterck ♦ 7.8k
2
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1
answer
128
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1
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Bioinformatics: Create database for local BLAST+ alignment
R blast written 24 days ago by tom5 • 0
2
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1
answer
210
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1
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Bioinformatics: Converting EntrezGeneID to FASTA entry for BLAST alignment
fasta R rna-seq blast written 26 days ago by tom5 • 0 • updated 25 days ago by vkkodali • 2.0k
0
votes
0
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85
views
0
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Blast InDels in CLC
indel clc blast written 27 days ago by chuck.barden3 • 0
0
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0
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75
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0
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Core proteome using local Blast
proteome core blast blastp local written 4 weeks ago by zarodkip • 0 • updated 4 weeks ago by h.mon ♦ 29k
2
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1
answer
91
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1
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Qcov Vs QcovHSP
blast written 4 weeks ago by Seigfried • 70 • updated 4 weeks ago by Chirag Parsania • 1.8k
0
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1
answer
164
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1
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Calculate gene coverage from Blast results
metagenomics coverage blast written 5 weeks ago by Happy_flower • 0 • updated 5 weeks ago by Istvan Albert ♦♦ 84k
5
votes
1
answer
124
views
1
answer
Phylogenetic tree in R
R phylogenetic tree bootstrap blast written 6 weeks ago by phoenix.sum13 • 10 • updated 6 weeks ago by Mensur Dlakic • 5.4k
1
vote
1
answer
122
views
1
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Extracting blast hit with upstream and downstream neighbourhood
blast blast+ bash written 6 weeks ago by agata • 10
0
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0
answers
109
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0
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makeblastdb file file size question.
makeblastdb blast written 6 weeks ago by Julian.dekker • 0
0
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0
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107
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0
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Why blast with same query sequence shows two different query length?
blast written 6 weeks ago by sharmatina189059 • 40 • updated 6 weeks ago by genomax ♦ 83k
0
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0
answers
80
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0
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ncRNA Blast on ensembl
ensembl plants ncrna blast ensembl plants written 6 weeks ago by m.seymaozturk • 0
0
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0
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84
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0
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BOLD ID engine API not working from shell
dna barcoding curl bold unix blast written 6 weeks ago by theo.leger • 0
2
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2
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4.9k
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5 follow
2
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Blast_Formatter: How To Choose Which Database To Read From?
blast written 8.8 years ago by User 6228 • 110 • updated 6 weeks ago by michael • 0
5
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4
answers
4.5k
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5 follow
4
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Blast Contigs To A Reference Sequence And Obtain An E-Value
assembly alignment blast written 6.7 years ago by ant0422ant • 0 • updated 7 weeks ago by Biostar ♦♦ 20
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