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<prev • 2,077 results • page 1 of 70 • next >
3
votes
1
answer
121
views
1
answer
Base by base alignment from BLAST to reference
alignment blast written 4 days ago by kspata • 30 • updated 3 days ago by h.mon ♦ 16k
0
votes
0
answers
73
views
0
answers
blastdb_aliastool mismatch converted GIs and final sequences
database blast written 5 days ago by roger.huerlimann • 0
0
votes
0
answers
159
views
0
answers
No output nr file after running makedb
diamond blast makedb written 9 weeks ago by Toto26 • 10 • updated 6 days ago by Biostar ♦♦ 20
0
votes
0
answers
87
views
0
answers
BioPython local blast different results than blast+ local blast
python blast biopython blast+ written 7 days ago by s.l.rinzema • 0
0
votes
1
answer
524
views
1
answer
Blast multiple sequences with Biopython qblast
blast written 14 months ago by bxia • 130 • updated 8 days ago by hielkewalinga • 0
3
votes
2
answers
379
views
5 follow
2
answers
What are some examples of non-homologous sequences having similar functions?
genome alignment sequence blast written 9 months ago by nafizh • 0 • updated 8 days ago by Biostar ♦♦ 20
0
votes
0
answers
198
views
0
answers
Redundant species in nr database
blastp nr homologs blast written 7 weeks ago by kritika.tauras • 0 • updated 9 days ago by Biostar ♦♦ 20
3
votes
2
answers
1.6k
views
5 follow
2
answers
Alternative to blast, faster but less sensitive?
sequence blast written 4.2 years ago by Jose Manuel Duarte • 270 • updated 11 days ago by Biostar ♦♦ 20
11
votes
2
answers
4.3k
views
2
answers
how to extract best hits of blast in terms of e-value, identity,...?
alignment blast rna-seq written 3.1 years ago by seta • 1000 • updated 12 days ago by chriswymant • 0
9
votes
3
answers
222
views
7 follow
3
answers
How to start with blast and a local database
genome assembly blast written 14 days ago by gbl1 • 20 • updated 12 days ago by colindaven • 730
1
vote
0
answers
108
views
0
answers
blast database name in output
blast written 5 weeks ago by gb • 160 • updated 13 days ago by Biostar ♦♦ 20
0
votes
2
answers
111
views
5 follow
2
answers
local web BLAST server
blast written 15 days ago by Ric • 180 • updated 14 days ago by lieven.sterck • 1.9k
0
votes
0
answers
173
views
0
answers
NcbiblastpCommandline , not working properly in python but commands work on console
blast biopython blastp ncbicommandline python 3.0 written 11 weeks ago by New2programming • 0 • updated 20 days ago by Biostar ♦♦ 20
2
votes
1
answer
114
views
1
answer
what's sequences are in the precomputed human_genomic database
blast written 22 days ago by nkinney06 • 30 • updated 22 days ago by genomax ♦ 51k
1
vote
0
answers
72
views
0
answers
blast -seqidlist is slow
blast written 22 days ago by gb • 160
1
vote
1
answer
63
views
1
answer
pulling out contigs that blast to a non-relevant species from xml files
blast2go blast written 22 days ago by paraskevopou • 0 • updated 22 days ago by Vijay Lakhujani ♦ 2.7k
2
votes
2
answers
2.0k
views
2
answers
Threshold over percentage identity in blastn
gene alignment next-gen blast written 2.2 years ago by Tony • 10 • updated 25 days ago by gb • 160
0
votes
0
answers
128
views
0
answers
Generate Consensus Sequence from Pairwise Alignment
consensus alignment blast written 26 days ago by kspata • 30
2
votes
1
answer
133
views
1
answer
Blastn Gives Different Results Based on Database Size
alignment sequence blast written 29 days ago by khv • 0 • updated 28 days ago by lieven.sterck • 1.9k
2
votes
1
answer
138
views
1
answer
BioPython BLAST Records HSP Sequences
ncbi biopython blast sequences written 4 weeks ago by samvanstroud • 0 • updated 4 weeks ago by Gungor Budak • 230
0
votes
0
answers
94
views
0
answers
How to create position specific scoring matrix using standalone blast
pssm blast written 4 weeks ago by apurvamehta2015 • 0
1
vote
0
answers
161
views
0
answers
BLAST taxid to complete linage using biopython on a local machine.
taxonomy biopython blast parsng written 3 months ago by lp.vandergouw • 0 • updated 5 weeks ago by Biostar ♦♦ 20
1
vote
0
answers
504
views
0
answers
how to makeblastdb with taxon id's
makeblastdb blast written 8 months ago by gb • 160 • updated 5 weeks ago by Biostar ♦♦ 20
0
votes
0
answers
83
views
0
answers
Tax4Fun - blast/MEGAN input
tax4fun metagenomic blast megan written 5 weeks ago by tomaz-biostars • 0
4
votes
1
answer
159
views
1
answer
Strategies for identifying as many homologs as possible
homology phylogenetics est msa blast written 5 weeks ago by michael • 0 • updated 5 weeks ago by Michael Dondrup ♦ 44k
6
votes
2
answers
184
views
6 follow
2
answers
Blast many read sequences
reads alignment contamination blast written 5 weeks ago by zoegward • 40 • updated 5 weeks ago by Vijay Lakhujani ♦ 2.7k
7
votes
0
answers
206
views
14 follow
0
answers
Parsing Blast output on linux/unix
python parse blast output linux written 6 weeks ago by chagross • 40 • updated 6 weeks ago by shira.zaltsman • 0
0
votes
0
answers
147
views
0
answers
Identifying database from which a hit sequence came from after blastdb_aliastool
blast blastdb_aliastool written 3 months ago by navela78 • 50 • updated 6 weeks ago by Biostar ♦♦ 20
4
votes
2
answers
545
views
5 follow
2
answers
OrthoMCL issue with BLAST and mySQL
blastall ortholog clustering orthomcl blast mysql written 6 months ago by merwright • 0 • updated 6 weeks ago by hudak7 • 0
5
votes
1
answer
190
views
1
answer
makeblastdb won't run in terminal (Mac OS X)
ncbi alignment blast sequencing written 7 weeks ago by alexille5640 • 10 • updated 7 weeks ago by WouterDeCoster ♦ 30k
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