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7
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1
answer
1.3k
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8 follow
1
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trying to use gnu parallel and blast
gnu parallel parallel blastx blast optimization written 18 months ago by pablo61991 • 70 • updated 9 days ago by Giuseppe • 0
4
votes
1
answer
89
views
1
answer
mRNA / Protein Annotation questions - etiquette and consensus
genome out-dated blastx re-annotation blastp written 24 days ago by Biogeek • 330 • updated 24 days ago by lieven.sterck • 3.3k
0
votes
0
answers
94
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0
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Database not showing when running BLAST+ on Galaxy
galaxy sequence blastx blast written 7 weeks ago by chrismanuel1993 • 0
0
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0
answers
1.3k
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0
answers
Going from BlastX to GO annotation
annotation blastx go ontology written 2.8 years ago by Biogeek • 330 • updated 12 weeks ago by RamRS ♦ 19k
1
vote
1
answer
133
views
1
answer
How to specify organism taxa in biopythons remote blast cmd?
biopyhon blastx written 3 months ago by tim.ivanov.92 • 10
3
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0
answers
223
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5 follow
0
answers
local blastx output
blastx written 4 months ago by agata88 • 760
0
votes
0
answers
281
views
0
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How to extract the sequences of the best orf in blastx?
blastx written 9 months ago by danielconejera • 0
0
votes
0
answers
349
views
0
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How to retain transcripts from blastx output at a given coverage?
assembly blastx rna-seq trinity written 10 months ago by unawaz • 10
2
votes
1
answer
312
views
1
answer
blastx results: small letters with gray color?
blastx written 12 months ago by madiha_shabbir46 • 0
2
votes
1
answer
375
views
1
answer
what happens when blast is run with default query "-"?
blastx blast written 13 months ago by chefarov • 110
1
vote
0
answers
581
views
0
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No. of blast hits uploaded in Blast2GO does not match with the actual number of hits in the diamond output xml file
blast2go blastx .xml diamond written 14 months ago by MSM55 • 80
0
votes
0
answers
621
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0
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finding NCBI protein ID and associated COG ID
nr database blastx cog written 17 months ago by bitpir • 100
0
votes
1
answer
1.1k
views
1
answer
Using UniProt's Retrieve/ID mapping service programmatically to retrieve Taxonomy from ACC_ID
taxonomy blastx uniprot written 18 months ago by ladypurrsia • 20 • updated 18 months ago by Elisabeth Gasteiger • 1.5k
2
votes
1
answer
616
views
1
answer
Retrieving Taxonomy from Uniprot/Swissprot ACC_ID From Blastx Results
taxonomy blastx uniprot written 18 months ago by ladypurrsia • 20
3
votes
2
answers
463
views
2
answers
Blastx versus nr?
blastx long_time computing_hours blast written 18 months ago by Buffo • 1.2k • updated 18 months ago by Jake Warner • 670
2
votes
1
answer
761
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1
answer
Can't grep qseqid (column 1) from blastx outfmt6
fasta blastx outfmt6 written 20 months ago by ladypurrsia • 20 • updated 20 months ago by jrj.healey ♦ 9.1k
2
votes
0
answers
884
views
0
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How to convert a database from protein to nucleotide
bioinformatics blastn blastx unix blast written 21 months ago by AJTrunkskun94 • 0 • updated 21 months ago by WouterDeCoster ♦ 35k
1
vote
0
answers
1.0k
views
0
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Error in blastx with nr database
nr database blastx attempt to access null pointer written 21 months ago by mirza • 80 • updated 21 months ago by genomax ♦ 59k
2
votes
1
answer
854
views
1
answer
ORFs from blastx results
orf coding sequence blastx rna-seq written 2.0 years ago by giulia.zancolli • 0 • updated 2.0 years ago by abascalfederico • 1.0k
1
vote
1
answer
751
views
1
answer
blastx output cut-off for creating gff
gff blastx ngs written 2.1 years ago by Whoknows • 670
0
votes
2
answers
921
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2
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please share your experience for ORF prediction +blastp instead of doing blastx
blast alignment blastx orf prediction blastp written 3.2 years ago by seta • 1.1k • updated 2.1 years ago by colindaven • 840
0
votes
1
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677
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1
answer
Easier way to filter contaminants based on protein similarity ?
trembl blastx diamond uniprot written 2.1 years ago by Biogeek • 330 • updated 2.1 years ago by Elisabeth Gasteiger • 1.5k
1
vote
0
answers
765
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0
answers
Output blastx top hits as fasta of the original sequences
blastx blast written 2.3 years ago by bonsalldavid • 0
6
votes
3
answers
763
views
3
answers
Blastx No hit query?
blastx outfmt6 nohit written 2.4 years ago by Buffo • 1.2k
0
votes
1
answer
706
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1
answer
blast x results - some making no sense
blastx written 2.5 years ago by Biogeek • 330 • updated 2.5 years ago by Chris Fields • 2.0k
2
votes
1
answer
989
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1
answer
blastx generates empty output file
annotation blastx blast rna-seq written 2.8 years ago by dovi • 60
0
votes
1
answer
662
views
1
answer
How to get blastx top hit (e-score)
blastx besthit written 2.8 years ago by Biogeek • 330 • updated 2.8 years ago by Dan Gaston ♦ 7.1k
0
votes
1
answer
978
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1
answer
Annotating the transcripts of a de novo plant transcriptome
standalone annotation blastx plant transcriptome written 2.9 years ago by Biogeek • 330 • updated 2.8 years ago by JC ♦ 7.0k
1
vote
1
answer
1.2k
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1
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The most popular GO annotation tool
transcriptome assembly gene ontology blastx written 2.9 years ago by seta • 1.1k • updated 2.9 years ago by Juke-34 • 1.7k
2
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1
answer
1.7k
views
1
answer
OID not found
oid blastx blast blastdbcmd written 3.0 years ago by arashrostamiazar • 0 • updated 3.0 years ago by Ahill • 1.3k
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