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Getting protein fasta from RNAseq BAM file (human) paying attention on repeats
fasta repeats bam blastx rna-seq written 5 weeks ago by pauli.pauli • 0 • updated 5 weeks ago by RamRS ♦ 20k
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1
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125
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blastx to compute complete, partial or missing genes
gene blastx blast written 6 weeks ago by Mbillah • 110 • updated 5 weeks ago by lieven.sterck ♦ 3.9k
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8 follow
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trying to use gnu parallel and blast
gnu parallel parallel blastx blast optimization written 20 months ago by pablo61991 • 70 • updated 10 weeks ago by Giuseppe • 0
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mRNA / Protein Annotation questions - etiquette and consensus
genome out-dated blastx re-annotation blastp written 12 weeks ago by Biogeek • 340 • updated 12 weeks ago by lieven.sterck ♦ 3.9k
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Database not showing when running BLAST+ on Galaxy
galaxy sequence blastx blast written 3 months ago by chrismanuel1993 • 0
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Going from BlastX to GO annotation
annotation blastx go ontology written 3.0 years ago by Biogeek • 340 • updated 4 months ago by RamRS ♦ 20k
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How to specify organism taxa in biopythons remote blast cmd?
biopyhon blastx written 5 months ago by tim.ivanov.92 • 10
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309
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5 follow
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local blastx output
blastx written 6 months ago by agata88 • 760
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How to extract the sequences of the best orf in blastx?
blastx written 11 months ago by danielconejera • 0
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390
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How to retain transcripts from blastx output at a given coverage?
assembly blastx rna-seq trinity written 12 months ago by unawaz • 40
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blastx results: small letters with gray color?
blastx written 14 months ago by madiha_shabbir46 • 0
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1
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408
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what happens when blast is run with default query "-"?
blastx blast written 15 months ago by chefarov • 120
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No. of blast hits uploaded in Blast2GO does not match with the actual number of hits in the diamond output xml file
blast2go blastx .xml diamond written 17 months ago by MSM55 • 90
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finding NCBI protein ID and associated COG ID
nr database blastx cog written 19 months ago by bitpir • 110
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Using UniProt's Retrieve/ID mapping service programmatically to retrieve Taxonomy from ACC_ID
taxonomy blastx uniprot written 20 months ago by ladypurrsia • 20 • updated 20 months ago by Elisabeth Gasteiger • 1.5k
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Retrieving Taxonomy from Uniprot/Swissprot ACC_ID From Blastx Results
taxonomy blastx uniprot written 20 months ago by ladypurrsia • 20
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Blastx versus nr?
blastx long_time computing_hours blast written 20 months ago by Buffo • 1.2k • updated 20 months ago by Jake Warner • 680
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1
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Can't grep qseqid (column 1) from blastx outfmt6
fasta blastx outfmt6 written 22 months ago by ladypurrsia • 20 • updated 22 months ago by jrj.healey ♦ 10k
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How to convert a database from protein to nucleotide
bioinformatics blastn blastx unix blast written 23 months ago by AJTrunkskun94 • 0 • updated 23 months ago by WouterDeCoster ♦ 36k
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Error in blastx with nr database
nr database blastx attempt to access null pointer written 23 months ago by mirza • 80 • updated 23 months ago by genomax ♦ 62k
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ORFs from blastx results
orf coding sequence blastx rna-seq written 2.2 years ago by giulia.zancolli • 0 • updated 2.2 years ago by abascalfederico • 1.0k
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blastx output cut-off for creating gff
gff blastx ngs written 2.2 years ago by Whoknows • 670
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please share your experience for ORF prediction +blastp instead of doing blastx
blast alignment blastx orf prediction blastp written 3.4 years ago by seta • 1.1k • updated 2.2 years ago by colindaven • 1.0k
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Easier way to filter contaminants based on protein similarity ?
trembl blastx diamond uniprot written 2.3 years ago by Biogeek • 340 • updated 2.3 years ago by Elisabeth Gasteiger • 1.5k
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Output blastx top hits as fasta of the original sequences
blastx blast written 2.4 years ago by bonsalldavid • 0
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3
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Blastx No hit query?
blastx outfmt6 nohit written 2.6 years ago by Buffo • 1.2k
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blast x results - some making no sense
blastx written 2.6 years ago by Biogeek • 340 • updated 2.6 years ago by Chris Fields • 2.0k
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blastx generates empty output file
annotation blastx blast rna-seq written 3.0 years ago by dovi • 60
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How to get blastx top hit (e-score)
blastx besthit written 3.0 years ago by Biogeek • 340 • updated 3.0 years ago by Dan Gaston ♦ 7.1k
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Annotating the transcripts of a de novo plant transcriptome
standalone annotation blastx plant transcriptome written 3.0 years ago by Biogeek • 340 • updated 3.0 years ago by JC ♦ 7.3k
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