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4
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1
answer
77
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1
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Blast run fails: memory exceeds the limit
blastx blast bash written 5 days ago by langziv • 0 • updated 5 days ago by Mensur Dlakic • 7.2k
1
vote
0
answers
128
views
0
answers
Assemble A1 and A2 reads using Trinity before running blastx on them
assembly blastx trinity written 5 months ago by kmkdesilva • 90
1
vote
1
answer
242
views
1
answer
Question about blastx output
assembly blastx rna-seq trinity written 9 months ago by yinbinqiu • 0
2
votes
2
answers
307
views
6 follow
2
answers
How to get 1 top hit only for each query in blastx
blastx blast rna-seq written 9 months ago by 2822462298 • 50 • updated 9 months ago by Fatima • 830
0
votes
0
answers
232
views
0
answers
BlastX Database: output search is empty
blastx database search error written 10 months ago by marongiu.luigi • 520
0
votes
0
answers
202
views
0
answers
B2G missing GO terms
blastx go b2g written 11 months ago by mgoldste • 0
1
vote
1
answer
297
views
1
answer
mpiblast returning an error with a specific FASTA file - Unable to open files
blastx mpiblast blast written 16 months ago by Light92 • 40
3
votes
2
answers
833
views
2
answers
Blastx versus nr?
blastx long_time computing_hours blast written 3.5 years ago by Buffo • 1.8k • updated 16 months ago by Biostar ♦♦ 20
0
votes
0
answers
406
views
0
answers
RepeatExplorer error during blastx parsing
R blastx repeatexplorer written 18 months ago by kaleb.gatto • 0
0
votes
0
answers
436
views
0
answers
Getting protein fasta from RNAseq BAM file (human) paying attention on repeats
fasta repeats bam blastx rna-seq written 22 months ago by pauli.pauli • 0 • updated 22 months ago by _r_am ♦ 31k
2
votes
1
answer
355
views
1
answer
blastx to compute complete, partial or missing genes
gene blastx blast written 23 months ago by Mbillah • 110 • updated 23 months ago by lieven.sterck ♦ 9.0k
7
votes
1
answer
2.6k
views
8 follow
1
answer
trying to use gnu parallel and blast
gnu parallel parallel blastx blast optimization written 3.4 years ago by pablo61991 • 80 • updated 24 months ago by Giuseppe • 0
4
votes
1
answer
457
views
1
answer
mRNA / Protein Annotation questions - etiquette and consensus
genome out-dated blastx re-annotation blastp written 2.0 years ago by Biogeek • 400 • updated 2.0 years ago by lieven.sterck ♦ 9.0k
0
votes
0
answers
419
views
0
answers
Database not showing when running BLAST+ on Galaxy
galaxy sequence blastx blast written 2.1 years ago by chrismanuel1993 • 0
0
votes
0
answers
2.0k
views
0
answers
Going from BlastX to GO annotation
annotation blastx go ontology written 4.8 years ago by Biogeek • 400 • updated 2.2 years ago by _r_am ♦ 31k
1
vote
1
answer
1.0k
views
1
answer
How to specify organism taxa in biopythons remote blast cmd?
biopyhon blastx written 2.2 years ago by tim.ivanov.92 • 10
3
votes
0
answers
1.2k
views
5 follow
0
answers
local blastx output
blastx written 2.4 years ago by agata88 • 800
0
votes
0
answers
717
views
0
answers
How to extract the sequences of the best orf in blastx?
blastx written 2.8 years ago by danielconejera • 0
0
votes
0
answers
791
views
0
answers
How to retain transcripts from blastx output at a given coverage?
assembly blastx rna-seq trinity written 2.8 years ago by unawaz • 50
2
votes
1
answer
1.2k
views
1
answer
blastx results: small letters with gray color?
blastx written 3.0 years ago by madiha_shabbir46 • 0
2
votes
1
answer
746
views
1
answer
what happens when blast is run with default query "-"?
blastx blast written 3.1 years ago by chefarov • 140
1
vote
0
answers
1.1k
views
0
answers
No. of blast hits uploaded in Blast2GO does not match with the actual number of hits in the diamond output xml file
blast2go blastx .xml diamond written 3.2 years ago by MSM55 • 140
0
votes
0
answers
1.2k
views
0
answers
finding NCBI protein ID and associated COG ID
nr database blastx cog written 3.4 years ago by bitpir • 190
0
votes
1
answer
2.1k
views
1
answer
Using UniProt's Retrieve/ID mapping service programmatically to retrieve Taxonomy from ACC_ID
taxonomy blastx uniprot written 3.5 years ago by ladypurrsia • 40 • updated 3.5 years ago by Elisabeth Gasteiger • 1.8k
2
votes
1
answer
1.3k
views
1
answer
Retrieving Taxonomy from Uniprot/Swissprot ACC_ID From Blastx Results
taxonomy blastx uniprot written 3.5 years ago by ladypurrsia • 40
2
votes
1
answer
1.4k
views
1
answer
Can't grep qseqid (column 1) from blastx outfmt6
fasta blastx outfmt6 written 3.6 years ago by ladypurrsia • 40 • updated 3.6 years ago by Joe ♦ 18k
2
votes
0
answers
1.6k
views
0
answers
How to convert a database from protein to nucleotide
bioinformatics blastn blastx unix blast written 3.7 years ago by AJTrunkskun94 • 0 • updated 3.7 years ago by WouterDeCoster ♦ 44k
1
vote
0
answers
1.8k
views
0
answers
Error in blastx with nr database
nr database blastx attempt to access null pointer written 3.7 years ago by mirza • 130 • updated 3.7 years ago by genomax ♦ 92k
2
votes
1
answer
1.3k
views
1
answer
ORFs from blastx results
orf coding sequence blastx rna-seq written 4.0 years ago by giulia.zancolli • 0 • updated 4.0 years ago by abascalfederico • 1.1k
1
vote
1
answer
1.3k
views
1
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blastx output cut-off for creating gff
gff blastx ngs written 4.0 years ago by Whoknows • 840
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