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blastx diamond returns taxid "NA" for some sequence queries
taxonomy blastx diamond written 18 days ago by pedrorodrigues • 10
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198
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1
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Blast run fails: memory exceeds the limit
blastx blast bash written 3 months ago by langziv • 0 • updated 3 months ago by Mensur Dlakic • 9.2k
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Assemble A1 and A2 reads using Trinity before running blastx on them
assembly blastx trinity written 8 months ago by kmkdesilva • 90
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307
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Question about blastx output
assembly blastx rna-seq trinity written 12 months ago by yinbinqiu • 0
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2
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434
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6 follow
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How to get 1 top hit only for each query in blastx
blastx blast rna-seq written 12 months ago by 2822462298 • 50 • updated 12 months ago by Fatima • 930
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276
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BlastX Database: output search is empty
blastx database search error written 13 months ago by marongiu.luigi • 520
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228
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B2G missing GO terms
blastx go b2g written 15 months ago by mgoldste • 0
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331
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1
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mpiblast returning an error with a specific FASTA file - Unable to open files
blastx mpiblast blast written 19 months ago by Light92 • 50
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2
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879
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2
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Blastx versus nr?
blastx long_time computing_hours blast written 3.8 years ago by Buffo • 1.8k • updated 20 months ago by Biostar ♦♦ 20
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479
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RepeatExplorer error during blastx parsing
R blastx repeatexplorer written 21 months ago by kaleb.gatto • 0
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Getting protein fasta from RNAseq BAM file (human) paying attention on repeats
fasta repeats bam blastx rna-seq written 2.2 years ago by pauli.pauli • 0 • updated 2.2 years ago by Ram ♦ 32k
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1
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389
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1
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blastx to compute complete, partial or missing genes
gene blastx blast written 2.2 years ago by Mbillah • 120 • updated 2.2 years ago by lieven.sterck ♦ 10k
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8 follow
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trying to use gnu parallel and blast
gnu parallel parallel blastx blast optimization written 3.7 years ago by pablo61991 • 80 • updated 2.3 years ago by Giuseppe • 0
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1
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498
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mRNA / Protein Annotation questions - etiquette and consensus
genome out-dated blastx re-annotation blastp written 2.3 years ago by Biogeek • 400 • updated 2.3 years ago by lieven.sterck ♦ 10k
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452
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Database not showing when running BLAST+ on Galaxy
galaxy sequence blastx blast written 2.4 years ago by chrismanuel1993 • 0
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Going from BlastX to GO annotation
annotation blastx go ontology written 5.0 years ago by Biogeek • 400 • updated 2.5 years ago by Ram ♦ 32k
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How to specify organism taxa in biopythons remote blast cmd?
biopyhon blastx written 2.5 years ago by tim.ivanov.92 • 10
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5 follow
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local blastx output
blastx written 2.6 years ago by agata88 • 810
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777
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How to extract the sequences of the best orf in blastx?
blastx written 3.0 years ago by danielconejera • 0
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How to retain transcripts from blastx output at a given coverage?
assembly blastx rna-seq trinity written 3.1 years ago by unawaz • 50
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1
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blastx results: small letters with gray color?
blastx written 3.2 years ago by madiha_shabbir46 • 0
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1
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what happens when blast is run with default query "-"?
blastx blast written 3.3 years ago by chefarov • 140
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No. of blast hits uploaded in Blast2GO does not match with the actual number of hits in the diamond output xml file
blast2go blastx .xml diamond written 3.5 years ago by MSM55 • 140
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1.3k
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finding NCBI protein ID and associated COG ID
nr database blastx cog written 3.7 years ago by bitpir • 190
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1
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Using UniProt's Retrieve/ID mapping service programmatically to retrieve Taxonomy from ACC_ID
taxonomy blastx uniprot written 3.7 years ago by ladypurrsia • 40 • updated 3.7 years ago by Elisabeth Gasteiger • 1.9k
2
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Retrieving Taxonomy from Uniprot/Swissprot ACC_ID From Blastx Results
taxonomy blastx uniprot written 3.7 years ago by ladypurrsia • 40
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Can't grep qseqid (column 1) from blastx outfmt6
fasta blastx outfmt6 written 3.9 years ago by ladypurrsia • 40 • updated 3.9 years ago by Joe ♦ 19k
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How to convert a database from protein to nucleotide
bioinformatics blastn blastx unix blast written 4.0 years ago by AJTrunkskun94 • 0 • updated 4.0 years ago by WouterDeCoster ♦ 45k
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Error in blastx with nr database
nr database blastx attempt to access null pointer written 4.0 years ago by mirza • 130 • updated 4.0 years ago by GenoMax ♦ 96k
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ORFs from blastx results
orf coding sequence blastx rna-seq written 4.3 years ago by giulia.zancolli • 0 • updated 4.3 years ago by abascalfederico • 1.1k
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