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How to extract the sequences of the best orf in blastx?
blastx written 3 months ago by danielconejera • 0
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How to retain transcripts from blastx output at a given coverage?
assembly blastx rna-seq trinity written 4 months ago by unawaz • 0
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210
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1
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blastx results: small letters with gray color?
blastx written 6 months ago by madiha_shabbir46 • 0
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1
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276
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1
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what happens when blast is run with default query "-"?
blastx blast written 7 months ago by chefarov • 80
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447
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No. of blast hits uploaded in Blast2GO does not match with the actual number of hits in the diamond output xml file
blast2go blastx .xml diamond written 9 months ago by MSM55 • 70
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414
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finding NCBI protein ID and associated COG ID
nr database blastx cog written 11 months ago by bitpir • 70
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6 follow
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trying to use gnu parallel and blast
gnu parallel parallel blastx blast optimization written 12 months ago by pablo61991 • 40
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1
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706
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Using UniProt's Retrieve/ID mapping service programmatically to retrieve Taxonomy from ACC_ID
taxonomy blastx uniprot written 12 months ago by ladypurrsia • 20 • updated 12 months ago by Elisabeth Gasteiger • 1.4k
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444
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Retrieving Taxonomy from Uniprot/Swissprot ACC_ID From Blastx Results
taxonomy blastx uniprot written 12 months ago by ladypurrsia • 20
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318
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Blastx versus nr?
blastx long_time computing_hours blast written 12 months ago by Buffo • 1.1k • updated 12 months ago by Jacob Warner • 600
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534
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Can't grep qseqid (column 1) from blastx outfmt6
fasta blastx outfmt6 written 14 months ago by ladypurrsia • 20 • updated 14 months ago by jrj.healey • 4.6k
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637
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How to convert a database from protein to nucleotide
bioinformatics blastn blastx unix blast written 15 months ago by AJTrunkskun94 • 0 • updated 15 months ago by WouterDeCoster ♦ 29k
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718
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Error in blastx with nr database
nr database blastx attempt to access null pointer written 15 months ago by mirza • 80 • updated 15 months ago by genomax ♦ 49k
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1
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680
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ORFs from blastx results
orf coding sequence blastx rna-seq written 19 months ago by giulia.zancolli • 0 • updated 19 months ago by abascalfederico • 1.0k
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620
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blastx output cut-off for creating gff
gff blastx ngs written 19 months ago by Whoknows • 640
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2
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838
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please share your experience for ORF prediction +blastp instead of doing blastx
blast alignment blastx orf prediction blastp written 2.7 years ago by seta • 980 • updated 19 months ago by colindaven • 690
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576
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Easier way to filter contaminants based on protein similarity ?
trembl blastx diamond uniprot written 20 months ago by Biogeek • 280 • updated 19 months ago by Elisabeth Gasteiger • 1.4k
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Output blastx top hits as fasta of the original sequences
blastx blast written 21 months ago by bonsalldavid • 0
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3
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634
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3
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Blastx No hit query?
blastx outfmt6 nohit written 23 months ago by Buffo • 1.1k
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591
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blast x results - some making no sense
blastx written 23 months ago by Biogeek • 280 • updated 23 months ago by Chris Fields • 1.9k
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825
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blastx generates empty output file
annotation blastx blast rna-seq written 2.3 years ago by dovi • 40
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574
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1
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How to get blastx top hit (e-score)
blastx besthit written 2.3 years ago by Biogeek • 280 • updated 2.3 years ago by Dan Gaston ♦ 7.0k
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Annotating the transcripts of a de novo plant transcriptome
standalone annotation blastx plant transcriptome written 2.4 years ago by Biogeek • 280 • updated 2.3 years ago by JC ♦ 6.7k
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1.1k
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Going from BlastX to GO annotation
annotation blastx go ontology written 2.3 years ago by Biogeek • 280
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The most popular GO annotation tool
transcriptome assembly gene ontology blastx written 2.4 years ago by seta • 980 • updated 2.4 years ago by Juke-34 • 1.2k
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OID not found
oid blastx blast blastdbcmd written 2.5 years ago by arashrostamiazar • 0 • updated 2.5 years ago by Ahill • 1.1k
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Why there is some discrepancy between blastx and blastp outputs?
transdecoder alignment blastx blastp written 2.6 years ago by seta • 980 • updated 2.6 years ago by Michael Dondrup ♦ 44k
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How to compare contigs with an existing protein from a species ?
contig sequence blastx dna written 3.3 years ago by carerjose • 0 • updated 3.2 years ago by Biostar ♦♦ 20
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Annotation of miRNA targets
blastx mirna written 3.2 years ago by The Last Word • 150
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how to extract blastxed sequences' corresponding amino acid sequences
sequence blastx blast written 3.3 years ago by Kurban • 160 • updated 3.2 years ago by mxs • 530
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