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<prev • 86 results • page 1 of 3 • next >
0
votes
1
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117
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1
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Is it possible to do a variant call on a BLAT output?
variant-call snp blat written 6 weeks ago by BlatUser007 • 0 • updated 6 weeks ago by JC ♦ 11k
7
votes
4
answers
3.1k
views
5 follow
4
answers
Problems For Mapping Contigs Onto Reference
genome reference blat written 9.5 years ago by Plantae • 380 • updated 8 weeks ago by Biostar ♦♦ 20
4
votes
1
answer
209
views
1
answer
How to look for a specific nucleotides of lncRNA sequence in TCGA data?
sequence tcga alignment rna-seq blat written 12 weeks ago by newbie • 90 • updated 12 weeks ago by Kevin Blighe ♦ 66k
1
vote
2
answers
2.0k
views
2
answers
How can we extract the alignment coordinates and gap coordinates in BLAT PSL?
alignment sequence blat written 5.6 years ago by Rohit • 1.4k • updated 5 months ago by anatoly.developer • 0
6
votes
1
answer
422
views
1
answer
News: Ensembl reduced functionality: 10th March-16th April 2020
ensembl news vep service blat written 8 months ago by Ben_Ensembl • 1.6k
1
vote
0
answers
222
views
0
answers
BLAT error while execution
error blat written 6 months ago by amitpande74 • 0 • updated 6 months ago by ATpoint ♦ 40k
0
votes
0
answers
156
views
0
answers
Error while Blat installation
pasa blat evm transcript assembly written 7 months ago by ashaneev07 • 20
2
votes
2
answers
1.8k
views
2
answers
Convert BLAT to GFF file?
psl annotation gff alignment blat written 4.0 years ago by rm16 • 0 • updated 8 months ago by pengchy • 430
2
votes
1
answer
323
views
1
answer
Should I merge the Paired-end RNA-seq reads for BLAT for intron identification
alignment rna-seq blat written 9 months ago by praasu • 30
1
vote
2
answers
216
views
2
answers
Extracting homologous proteins from genome ( blat or exonerate)
genome phylogeny exonerate proteins blat written 9 months ago by ricardoguerreiro2121 • 60
0
votes
0
answers
405
views
0
answers
Blat (v3.4) installation error
software error assembly blat aligngraph written 11 months ago by hikik1225 • 20
0
votes
1
answer
208
views
1
answer
Efficiently run blat for long sequences
assembly sequence alignment blat written 13 months ago by Jautis • 290 • updated 13 months ago by Vitis • 2.4k
2
votes
1
answer
331
views
1
answer
gene prediction without GT-AG splice site bias
genome annotation assembly rna-seq blat written 15 months ago by praasu • 30 • updated 15 months ago by caggtaagtat • 1.3k
0
votes
1
answer
283
views
1
answer
How to check the expression of a gene using the sequence of that gene?
ensembl sequence lncrna rna-seq blat written 15 months ago by Biologist • 190 • updated 15 months ago by flogin • 250
0
votes
0
answers
450
views
0
answers
Aligning SNP array probes to human genome with BLAT -- how to prioritize matches?
array probe alignment snp blat written 18 months ago by croberts377 • 0
3
votes
1
answer
1.3k
views
5 follow
1
answer
How to compare two proteomes
proteome alignement blast comparison blat written 23 months ago by tal • 0
1
vote
1
answer
636
views
1
answer
BWASW and _alt alleles
alignment bwa blat written 23 months ago by Maximilian Haeussler • 1.3k
0
votes
0
answers
428
views
0
answers
Coordinates for Gene in Unannotated Reference FASTA
annotation blast blat written 2.0 years ago by gtasource • 60
0
votes
0
answers
460
views
0
answers
BLAT Results to BED for each Gene
blat written 2.1 years ago by gtasource • 60
0
votes
0
answers
2.0k
views
0
answers
How to prepare index/server for blat?
alignment blat gfserver index written 4.7 years ago by kirannbishwa01 • 1.2k • updated 2.1 years ago by RamRS ♦ 30k
2
votes
1
answer
710
views
1
answer
Odd max query limit in BLAT
blat written 2.4 years ago by juan.crescente • 40
3
votes
4
answers
635
views
6 follow
4
answers
Forum: How do you use BLAST?
forum blast sequence searching blat written 2.4 years ago by Emily_Ensembl ♦ 21k • updated 2.4 years ago by lakhujanivijay ♦ 5.3k
2
votes
1
answer
859
views
1
answer
Continuous alignment of contigs with reference using blast /blat
alignment contigs blat written 2.5 years ago by deepti1rao • 30 • updated 2.5 years ago by h.mon ♦ 31k
1
vote
0
answers
939
views
0
answers
UCSC Blat Result Problem
local blat ucsc blat blat written 2.6 years ago by selam • 0
2
votes
1
answer
769
views
1
answer
BLAT command call in c++ project (Netbeans)
c++ blat written 3.0 years ago by madiha_shabbir46 • 0 • updated 3.0 years ago by kloetzl • 1.1k
4
votes
1
answer
1.4k
views
1
answer
Database for local BLAST and BLAT for 200-1000bp query sequences in human and primates
blast blat written 3.3 years ago by rmartson • 30 • updated 3.3 years ago by WouterDeCoster ♦ 44k
0
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1
answer
1.0k
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1
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Is it possible to download BLAT results as actual sequences i.e. in genbank or fasta format?
blat ucsc written 3.3 years ago by rmartson • 30
0
votes
1
answer
842
views
1
answer
Where do you actually download UCSC BLAT output?
blat blast ucsc written 3.3 years ago by rmartson • 30
0
votes
0
answers
801
views
0
answers
Bam file without any sequence
psl2sam sam blat written 3.5 years ago by tiago211287 • 1.2k
2
votes
1
answer
810
views
1
answer
BLAT for Web Apollo
apollo alignment sequence blast blat written 3.6 years ago by mas14 • 10
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