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1
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2
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1.9k
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2
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How can we extract the alignment coordinates and gap coordinates in BLAT PSL?
alignment sequence blat written 5.2 years ago by Rohit • 1.4k • updated 5 weeks ago by anatoly.developer • 0
6
votes
1
answer
336
views
1
answer
News: Ensembl reduced functionality: 10th March-16th April 2020
ensembl news vep service blat written 3 months ago by Ben_Ensembl • 1.4k
1
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0
answers
124
views
0
answers
BLAT error while execution
error blat written 7 weeks ago by amitpande74 • 0 • updated 7 weeks ago by ATpoint ♦ 35k
0
votes
0
answers
93
views
0
answers
Error while Blat installation
pasa blat evm transcript assembly written 3 months ago by ashaneev07 • 20
2
votes
2
answers
1.6k
views
2
answers
Convert BLAT to GFF file?
psl annotation gff alignment blat written 3.7 years ago by rm16 • 0 • updated 3 months ago by pengchy • 420
2
votes
1
answer
227
views
1
answer
Should I merge the Paired-end RNA-seq reads for BLAT for intron identification
alignment rna-seq blat written 4 months ago by praasu • 30
1
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2
answers
135
views
2
answers
Extracting homologous proteins from genome ( blat or exonerate)
genome phylogeny exonerate proteins blat written 4 months ago by ricardoguerreiro2121 • 60
0
votes
0
answers
274
views
0
answers
Blat (v3.4) installation error
software error assembly blat aligngraph written 7 months ago by hikik1225 • 20
0
votes
1
answer
156
views
1
answer
Efficiently run blat for long sequences
assembly sequence alignment blat written 9 months ago by Jautis • 290 • updated 8 months ago by Vitis • 2.3k
2
votes
1
answer
256
views
1
answer
gene prediction without GT-AG splice site bias
genome annotation assembly rna-seq blat written 10 months ago by praasu • 30 • updated 10 months ago by caggtaagtat • 1.0k
0
votes
1
answer
235
views
1
answer
How to check the expression of a gene using the sequence of that gene?
ensembl sequence lncrna rna-seq blat written 11 months ago by Biologist • 190 • updated 11 months ago by flogin • 210
0
votes
0
answers
357
views
0
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Aligning SNP array probes to human genome with BLAT -- how to prioritize matches?
array probe alignment snp blat written 14 months ago by croberts377 • 0
3
votes
1
answer
980
views
5 follow
1
answer
How to compare two proteomes
proteome alignement blast comparison blat written 18 months ago by tal • 0
1
vote
1
answer
540
views
1
answer
BWASW and _alt alleles
alignment bwa blat written 19 months ago by Maximilian Haeussler • 1.3k
0
votes
0
answers
371
views
0
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Coordinates for Gene in Unannotated Reference FASTA
annotation blast blat written 19 months ago by gtasource • 60
0
votes
0
answers
394
views
0
answers
BLAT Results to BED for each Gene
blat written 20 months ago by gtasource • 60
0
votes
0
answers
1.8k
views
0
answers
How to prepare index/server for blat?
alignment blat gfserver index written 4.3 years ago by kirannbishwa01 • 1.2k • updated 20 months ago by RamRS ♦ 27k
2
votes
1
answer
657
views
1
answer
Odd max query limit in BLAT
blat written 2.0 years ago by juan.crescente • 40
3
votes
4
answers
581
views
6 follow
4
answers
Forum: How do you use BLAST?
forum blast sequence searching blat written 2.1 years ago by Emily_Ensembl ♦ 20k • updated 2.1 years ago by lakhujanivijay ♦ 5.0k
2
votes
1
answer
753
views
1
answer
Continuous alignment of contigs with reference using blast /blat
alignment contigs blat written 2.1 years ago by deepti1rao • 30 • updated 2.1 years ago by h.mon ♦ 29k
7
votes
4
answers
3.0k
views
5 follow
4
answers
Problems For Mapping Contigs Onto Reference
genome reference blat written 9.2 years ago by Plantae • 380 • updated 2.1 years ago by deepti1rao • 30
1
vote
0
answers
823
views
0
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UCSC Blat Result Problem
local blat ucsc blat blat written 2.2 years ago by selam • 0
2
votes
1
answer
703
views
1
answer
BLAT command call in c++ project (Netbeans)
c++ blat written 2.6 years ago by madiha_shabbir46 • 0 • updated 2.6 years ago by kloetzl • 1.1k
4
votes
1
answer
1.3k
views
1
answer
Database for local BLAST and BLAT for 200-1000bp query sequences in human and primates
blast blat written 2.9 years ago by rmartson • 30 • updated 2.9 years ago by WouterDeCoster ♦ 43k
0
votes
1
answer
923
views
1
answer
Is it possible to download BLAT results as actual sequences i.e. in genbank or fasta format?
blat ucsc written 2.9 years ago by rmartson • 30
0
votes
1
answer
765
views
1
answer
Where do you actually download UCSC BLAT output?
blat blast ucsc written 2.9 years ago by rmartson • 30
0
votes
0
answers
726
views
0
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Bam file without any sequence
psl2sam sam blat written 3.2 years ago by tiago211287 • 1.2k
2
votes
1
answer
755
views
1
answer
BLAT for Web Apollo
apollo alignment sequence blast blat written 3.2 years ago by mas14 • 10
9
votes
3
answers
4.4k
views
3
answers
How To Find The Best Hit From Output.Psl
bioinformatics alignment blat written 6.5 years ago by alok.helix • 80 • updated 3.3 years ago by osowiecki • 0
0
votes
0
answers
824
views
0
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Tool BreaKMer Error - gfServer wait time exceeded
breakmer gfserver blat written 3.3 years ago by shrutidesai0208 • 0
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