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<prev • 81 results • page 1 of 3 • next >
2
votes
1
answer
106
views
1
answer
Should I merge the Paired-end RNA-seq reads for BLAT for intron identification
alignment rna-seq blat written 2 days ago by praasu • 30
1
vote
2
answers
65
views
2
answers
Extracting homologous proteins from genome ( blat or exonerate)
genome phylogeny exonerate proteins blat written 3 days ago by ricardoguerreiro2121 • 30
2
votes
2
answers
1.4k
views
2
answers
Convert BLAT to GFF file?
psl annotation gff alignment blat written 3.3 years ago by rm16 • 0 • updated 24 days ago by opplatek • 40
0
votes
0
answers
162
views
0
answers
Blat (v3.4) installation error
software error assembly blat aligngraph written 11 weeks ago by hikik1225 • 20
0
votes
1
answer
116
views
1
answer
Efficiently run blat for long sequences
assembly sequence alignment blat written 4 months ago by Jautis • 290 • updated 4 months ago by Vitis • 2.3k
2
votes
1
answer
179
views
1
answer
gene prediction without GT-AG splice site bias
genome annotation assembly rna-seq blat written 5 months ago by praasu • 30 • updated 5 months ago by caggtaagtat • 930
0
votes
1
answer
174
views
1
answer
How to check the expression of a gene using the sequence of that gene?
ensembl sequence lncrna rna-seq blat written 6 months ago by Biologist • 190 • updated 6 months ago by flogin • 150
0
votes
0
answers
234
views
0
answers
Aligning SNP array probes to human genome with BLAT -- how to prioritize matches?
array probe alignment snp blat written 9 months ago by croberts377 • 0
2
votes
1
answer
683
views
1
answer
How to compare two proteomes
proteome alignement blast comparison blat written 13 months ago by tal • 0
1
vote
1
answer
443
views
1
answer
BWASW and _alt alleles
alignment bwa blat written 14 months ago by Maximilian Haeussler • 1.3k
0
votes
0
answers
321
views
0
answers
Coordinates for Gene in Unannotated Reference FASTA
annotation blast blat written 15 months ago by gtasource • 30
0
votes
0
answers
335
views
0
answers
BLAT Results to BED for each Gene
blat written 15 months ago by gtasource • 30
0
votes
0
answers
1.7k
views
0
answers
How to prepare index/server for blat?
alignment blat gfserver index written 3.9 years ago by kirannbishwa01 • 1.1k • updated 16 months ago by RamRS ♦ 25k
2
votes
1
answer
586
views
1
answer
Odd max query limit in BLAT
blat written 20 months ago by juan.crescente • 20
3
votes
4
answers
522
views
6 follow
4
answers
Forum: How do you use BLAST?
forum blast sequence searching blat written 20 months ago by Emily_Ensembl ♦ 20k • updated 20 months ago by lakhujanivijay ♦ 4.7k
2
votes
1
answer
640
views
1
answer
Continuous alignment of contigs with reference using blast /blat
alignment contigs blat written 20 months ago by deepti1rao • 30 • updated 20 months ago by h.mon ♦ 29k
7
votes
4
answers
3.0k
views
5 follow
4
answers
Problems For Mapping Contigs Onto Reference
genome reference blat written 8.8 years ago by Plantae • 380 • updated 20 months ago by deepti1rao • 30
1
vote
0
answers
700
views
0
answers
UCSC Blat Result Problem
local blat ucsc blat blat written 21 months ago by selam • 0
2
votes
1
answer
627
views
1
answer
BLAT command call in c++ project (Netbeans)
c++ blat written 2.2 years ago by madiha_shabbir46 • 0 • updated 2.2 years ago by kloetzl • 1.1k
4
votes
1
answer
1.2k
views
1
answer
Database for local BLAST and BLAT for 200-1000bp query sequences in human and primates
blast blat written 2.5 years ago by rmartson • 20 • updated 2.5 years ago by WouterDeCoster ♦ 42k
0
votes
1
answer
840
views
1
answer
Is it possible to download BLAT results as actual sequences i.e. in genbank or fasta format?
blat ucsc written 2.5 years ago by rmartson • 20
0
votes
1
answer
699
views
1
answer
Where do you actually download UCSC BLAT output?
blat blast ucsc written 2.5 years ago by rmartson • 20
0
votes
0
answers
640
views
0
answers
Bam file without any sequence
psl2sam sam blat written 2.8 years ago by tiago211287 • 1.1k
2
votes
1
answer
698
views
1
answer
BLAT for Web Apollo
apollo alignment sequence blast blat written 2.8 years ago by mas14 • 10
9
votes
3
answers
4.2k
views
3
answers
How To Find The Best Hit From Output.Psl
bioinformatics alignment blat written 6.1 years ago by alok.helix • 80 • updated 2.9 years ago by osowiecki • 0
0
votes
0
answers
773
views
0
answers
Tool BreaKMer Error - gfServer wait time exceeded
breakmer gfserver blat written 3.0 years ago by shrutidesai0208 • 0
1
vote
0
answers
1.1k
views
0
answers
BLAT against nt
2bit fasta nt contamination blat written 3.0 years ago by Assa Yeroslaviz • 1.2k
25
votes
3
answers
9.4k
views
8 follow
3
answers
Conversion Of Blat Output To Sam/Bam
conversion format sam bam blat written 9.0 years ago by Michael Dondrup ♦ 47k • updated 3.0 years ago by Botond Sipos • 1.7k
2
votes
0
answers
1.2k
views
0
answers
Tool: Uncle PSL: BLAT to SAM conversion in Python
alignment blat tool rna-seq sam written 3.0 years ago by Botond Sipos • 1.7k
10
votes
3
answers
2.6k
views
3
answers
where to download blat command tool for windows?
windows blat written 3.7 years ago by Chen • 930 • updated 3.0 years ago by liangjiao.xue • 100
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