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<prev • 78 results • page 1 of 3 • next >
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82
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Efficiently run blat for long sequences
assembly sequence alignment blat written 5 weeks ago by Jautis • 280 • updated 27 days ago by Vitis • 2.2k
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1
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118
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1
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gene prediction without GT-AG splice site bias
genome annotation assembly rna-seq blat written 11 weeks ago by praasu • 30 • updated 11 weeks ago by caggtaagtat • 800
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1
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122
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1
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How to check the expression of a gene using the sequence of that gene?
ensembl sequence lncrna rna-seq blat written 3 months ago by Biologist • 160 • updated 3 months ago by flogin • 150
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0
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171
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Aligning SNP array probes to human genome with BLAT -- how to prioritize matches?
array probe alignment snp blat written 6 months ago by croberts377 • 0
2
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1
answer
530
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1
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How to compare two proteomes
proteome alignement blast comparison blat written 10 months ago by tal • 0
1
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1
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372
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1
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BWASW and _alt alleles
alignment bwa blat written 11 months ago by Maximilian Haeussler • 1.3k
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280
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0
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Coordinates for Gene in Unannotated Reference FASTA
annotation blast blat written 12 months ago by gtasource • 20
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0
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287
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0
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BLAT Results to BED for each Gene
blat written 12 months ago by gtasource • 20
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0
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1.6k
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0
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How to prepare index/server for blat?
alignment blat gfserver index written 3.6 years ago by kirannbishwa01 • 1.1k • updated 13 months ago by RamRS ♦ 24k
2
votes
1
answer
532
views
1
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Odd max query limit in BLAT
blat written 16 months ago by juan.crescente • 20
3
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4
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476
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6 follow
4
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Forum: How do you use BLAST?
forum blast sequence searching blat written 17 months ago by Emily_Ensembl ♦ 19k • updated 17 months ago by lakhujanivijay ♦ 4.5k
2
votes
1
answer
576
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1
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Continuous alignment of contigs with reference using blast /blat
alignment contigs blat written 17 months ago by deepti1rao • 20 • updated 17 months ago by h.mon ♦ 27k
7
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4
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2.9k
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5 follow
4
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Problems For Mapping Contigs Onto Reference
genome reference blat written 8.5 years ago by Plantae • 380 • updated 17 months ago by deepti1rao • 20
1
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0
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619
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UCSC Blat Result Problem
local blat ucsc blat blat written 18 months ago by selam • 0
2
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1
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582
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1
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BLAT command call in c++ project (Netbeans)
c++ blat written 23 months ago by madiha_shabbir46 • 0 • updated 23 months ago by kloetzl • 1.1k
4
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1
answer
1.1k
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1
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Database for local BLAST and BLAT for 200-1000bp query sequences in human and primates
blast blat written 2.3 years ago by rmartson • 20 • updated 2.3 years ago by WouterDeCoster ♦ 41k
0
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1
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778
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1
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Is it possible to download BLAT results as actual sequences i.e. in genbank or fasta format?
blat ucsc written 2.3 years ago by rmartson • 20
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1
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659
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1
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Where do you actually download UCSC BLAT output?
blat blast ucsc written 2.3 years ago by rmartson • 20
0
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0
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589
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0
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Bam file without any sequence
psl2sam sam blat written 2.5 years ago by tiago211287 • 1.1k
2
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1
answer
643
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1
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BLAT for Web Apollo
apollo alignment sequence blast blat written 2.6 years ago by mas14 • 10
9
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3
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4.0k
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3
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How To Find The Best Hit From Output.Psl
bioinformatics alignment blat written 5.9 years ago by alok.helix • 80 • updated 2.7 years ago by osowiecki • 0
0
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0
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724
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0
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Tool BreaKMer Error - gfServer wait time exceeded
breakmer gfserver blat written 2.7 years ago by shrutidesai0208 • 0
1
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0
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1.1k
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0
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BLAT against nt
2bit fasta nt contamination blat written 2.7 years ago by Assa Yeroslaviz • 1.2k
25
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3
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9.1k
views
8 follow
3
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Conversion Of Blat Output To Sam/Bam
conversion format sam bam blat written 8.7 years ago by Michael Dondrup ♦ 46k • updated 2.7 years ago by Botond Sipos • 1.7k
2
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0
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1.1k
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0
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Tool: Uncle PSL: BLAT to SAM conversion in Python
alignment blat tool rna-seq sam written 2.7 years ago by Botond Sipos • 1.7k
10
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3
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2.5k
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3
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where to download blat command tool for windows?
windows blat written 3.4 years ago by Chen • 910 • updated 2.8 years ago by liangjiao.xue • 100
6
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3
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7.3k
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3
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Trouble Installing Blat Executables
blat written 6.5 years ago by agatorano • 50 • updated 2.9 years ago by brianlee • 0
2
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1
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1.3k
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1
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Convert BLAT to GFF file?
psl annotation gff alignment blat written 3.0 years ago by rm16 • 0
3
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1
answer
945
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1
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Popen Blat has different behavior than same syntax in shell
python blat written 3.0 years ago by nchuang • 200
2
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1
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1.5k
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1
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Query Ucsc With Known Sequence To Get Chr Position
ucsc mysql blat written 5.9 years ago by mathew.nightingale • 10 • updated 3.1 years ago by Biostar ♦♦ 20
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