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2
votes
1
answer
153
views
1
answer
Odd max query limit in BLAT
blat written 12 weeks ago by juan.crescente • 20
3
votes
4
answers
240
views
6 follow
4
answers
Forum: How do you use BLAST?
forum blast sequence searching blat written 3 months ago by Emily_Ensembl ♦ 15k • updated 3 months ago by Vijay Lakhujani ♦ 3.0k
1
vote
1
answer
207
views
1
answer
Continuous alignment of contigs with reference using blast /blat
alignment contigs blat written 3 months ago by deepti1rao • 0 • updated 3 months ago by h.mon ♦ 18k
7
votes
4
answers
2.5k
views
5 follow
4
answers
Problems For Mapping Contigs Onto Reference
genome reference blat written 7.4 years ago by Plantae • 380 • updated 3 months ago by deepti1rao • 0
1
vote
0
answers
274
views
0
answers
UCSC Blat Result Problem
local blat ucsc blat blat written 4 months ago by selam • 0
2
votes
1
answer
324
views
1
answer
BLAT command call in c++ project (Netbeans)
c++ blat written 9 months ago by madiha_shabbir46 • 0 • updated 9 months ago by kloetzl • 960
3
votes
1
answer
559
views
1
answer
Database for local BLAST and BLAT for 200-1000bp query sequences in human and primates
blast blat written 13 months ago by rmartson • 10 • updated 13 months ago by WouterDeCoster ♦ 31k
0
votes
1
answer
456
views
1
answer
Is it possible to download BLAT results as actual sequences i.e. in genbank or fasta format?
blat ucsc written 13 months ago by rmartson • 10
0
votes
1
answer
364
views
1
answer
Where do you actually download UCSC BLAT output?
blat blast ucsc written 13 months ago by rmartson • 10
0
votes
0
answers
361
views
0
answers
Bam file without any sequence
psl2sam sam blat written 16 months ago by tiago211287 • 1000
2
votes
1
answer
380
views
1
answer
BLAT for Web Apollo
apollo alignment sequence blast blat written 17 months ago by mas14 • 10
7
votes
3
answers
3.2k
views
3
answers
How To Find The Best Hit From Output.Psl
bioinformatics alignment blat written 4.7 years ago by alok.helix • 70 • updated 18 months ago by osowiecki • 0
0
votes
0
answers
494
views
0
answers
Tool BreaKMer Error - gfServer wait time exceeded
breakmer gfserver blat written 18 months ago by shrutidesai0208 • 0
1
vote
0
answers
632
views
0
answers
BLAT against nt
2bit fasta nt contamination blat written 19 months ago by Assa Yeroslaviz • 1.1k
25
votes
3
answers
8.0k
views
8 follow
3
answers
Conversion Of Blat Output To Sam/Bam
conversion format sam bam blat written 7.6 years ago by Michael Dondrup ♦ 44k • updated 19 months ago by Botond Sipos • 1.6k
2
votes
0
answers
763
views
0
answers
Tool: Uncle PSL: BLAT to SAM conversion in Python
alignment blat tool rna-seq sam written 19 months ago by Botond Sipos • 1.6k
9
votes
3
answers
1.7k
views
3
answers
where to download blat command tool for windows?
windows blat written 2.3 years ago by Chen • 690 • updated 19 months ago by liangjiao.xue • 100
6
votes
3
answers
6.5k
views
3
answers
Trouble Installing Blat Executables
blat written 5.4 years ago by agatorano • 40 • updated 21 months ago by brianlee • 0
2
votes
1
answer
918
views
1
answer
Convert BLAT to GFF file?
psl annotation gff alignment blat written 22 months ago by rm16 • 0
3
votes
1
answer
619
views
1
answer
Popen Blat has different behavior than same syntax in shell
python blat written 23 months ago by nchuang • 180
2
votes
1
answer
1.3k
views
1
answer
Query Ucsc With Known Sequence To Get Chr Position
ucsc mysql blat written 4.8 years ago by mathew.nightingale • 10 • updated 23 months ago by Biostar ♦♦ 20
0
votes
0
answers
497
views
0
answers
Blat: Assertion 'offset <= inSeq->size' failed
alignment blat written 24 months ago by Ric • 190
1
vote
0
answers
839
views
0
answers
BLAT with cython? Bypassing the IO of BLAT
python cython blat written 2.1 years ago by adkhawkins • 0
4
votes
1
answer
3.2k
views
1
answer
UCSC blat command-line version
commandlineblat blat ucsc written 2.1 years ago by alessandro_d • 0 • updated 2.1 years ago by Emily_Ensembl ♦ 15k
0
votes
1
answer
1.0k
views
1
answer
BLAT: how to select best hit at one genomic position? (queries are repeats)
genome transposable elements .psl best hit blat written 2.3 years ago by goubert.clement • 10 • updated 2.3 years ago by Amitm • 1.5k
1
vote
1
answer
737
views
1
answer
Tuning local blat to perform more like UCSC's version
blat written 2.3 years ago by dchen71 • 0 • updated 2.3 years ago by mastal511 • 1.9k
0
votes
0
answers
1.2k
views
0
answers
How to prepare index/server for blat?
alignment blat gfserver index written 2.5 years ago by kirannbishwa01 • 830
0
votes
1
answer
1.6k
views
1
answer
PASA: Error during sample run
gmap pasa myposts blat written 2.5 years ago by Chirag Parsania • 930
4
votes
2
answers
1.6k
views
2
answers
How can I know what genes each Trinity ID are ?
rnaseq trinity blat denovo assembly written 2.6 years ago by tiago211287 • 1000 • updated 2.6 years ago by cyril-cros • 820
0
votes
1
answer
701
views
1
answer
BLAT error sequnces
alignment blat test written 2.8 years ago by midox • 190 • updated 2.8 years ago by genomax ♦ 54k
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