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<prev • 376 results • page 1 of 13 • next >
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Calculate percentage mapped reads from Bowtie2/RSEM
flagstat resm-plot-model mapped reads rsem bowtie2 written 3.2 years ago by ando.kelli • 40 • updated 1 hour ago by rohitsatyam102 • 60
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0
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87
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Finding gene matches using sequence reads?
reads bowtie2 metagenomic written 5 days ago by anabaena • 0 • updated 4 days ago by Fatima • 340
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0
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77
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0
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Indexing Genome Commands in Linux (hummingbird-ucsc)
bowtie2 chip-seq linux written 11 days ago by Scott McKay • 20
2
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1
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69
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1
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Bowtie2 Warnings after make command and errors after trying to use bowtie2-build
bowtie2 alignment python written 12 days ago by guto03 • 0
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0
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88
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0
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anomalous alignment with bowtie2
bowtie2 alignment bowtie blast score written 19 days ago by mark.rose • 30 • updated 19 days ago by genomax ♦ 78k
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1
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123
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1
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Not sure if pipe from bowtie2 to samtools is working?
chip-seq syntax samtools bowtie2 pipes written 5 weeks ago by ejwright • 0 • updated 5 weeks ago by ATpoint ♦ 29k
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140
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Help with bowtie2 aligning PE Radseq sequences to reference genome
genome bowtie2 radseq mapping illumina written 5 weeks ago by imda • 10
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3
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2.8k
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3
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Which aligner is best suited for circular human mitochondrial genome?
bowtie2 alignment bwa assembly written 4.2 years ago by nalandaatmi • 70 • updated 10 weeks ago by Jonathanjacobs • 240
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157
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0
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Error, fewer reads in file specified with -2 than in file specified with -1
wgs ngs sequencing bowtie2 written 12 weeks ago by manojkumarbioinfo • 30 • updated 12 weeks ago by h.mon ♦ 29k
4
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1
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694
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1
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Does bowtie2 take gz input files?
bowtie2 gzip input gz fq.gz gzip written 4 months ago by f.dinesh • 0 • updated 12 weeks ago by Biostar ♦♦ 20
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172
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bowtie2 -all ... multiple alignment Chip-seq
multiple alignment bowtie2 alignment chip-seq written 3 months ago by poltora4enko • 0
1
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0
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117
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0
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Plotting range/type of discordance in alignment data
bowtie2 sequence alignment written 3 months ago by rbronste • 340
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0
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120
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0
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Error : viGEN : bowtie2 Alignment - No input read files were valid
bowtie2 allignnment rna-seq written 3 months ago by venura • 10
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1
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136
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1
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How to view read mapping from Bowtie2, Samtools, etc
bowtie2 samtools bowtie readmapping written 3 months ago by ksipes • 0 • updated 3 months ago by Asaf ♦ 7.0k
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1
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157
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1
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Aligning multiple Fastq files using Bowtie2
bowtie2 fastq alignment rna-seq written 4 months ago by deepak18 • 10 • updated 4 months ago by WouterDeCoster ♦ 43k
2
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0
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289
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0
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Bowtie2 Error: *.* has more quality values than read characters
software error bowtie2 fastq written 5 months ago by rbronste • 340 • updated 4 months ago by Biostar ♦♦ 20
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150
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0
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RSEM output expected count interpretation
trinity rsem bowtie2 written 4 months ago by jonathon481 • 0
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2
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248
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5 follow
2
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Tophat Usage difficulty?
bowtie2 tophat alignment mapping written 4 months ago by jaqx008 • 70
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1
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413
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1
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Bowtie2 alignment help for ATAC-seq
bowtie2 alignment data analysis atac-seq written 4 months ago by mrs.whirly • 0 • updated 4 months ago by ATpoint ♦ 29k
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204
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0
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ATAC seq enhancer help
atacseq bowtie2 enhancers alignment dna written 4 months ago by mrs.whirly • 0
0
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0
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188
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0
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Minimal mapping score of bowtie2
bowtie2 chip-seq mapping written 4 months ago by dcheng1 • 0
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0
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219
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Bowtie2 local setting & score threshold
bowtie2 next-gen mapping written 4 months ago by MTW • 0
0
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1
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205
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1
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Trinity RSEM Bowtie2 align_and_estimate_abundance script error
trinity rsem rna-seq bowtie2 written 5 months ago by Light92 • 20 • updated 5 months ago by genomax ♦ 78k
0
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0
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286
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0
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Read alignment using Bowtie2
bowtie2 alignment score written 5 months ago by Ina • 0
8
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1
answer
174
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1
answer
How to break script if Bowtie2 errors?
bowtie2 written 5 months ago by dfajar2 • 60
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0
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292
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0
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Bowtie 2 index files exist but return Error: Could not find Bowtie 2 index files (humanGRCh38.*.bt2l)
bowtie2 tophat rna-seq index written 7 months ago by skurkure • 0 • updated 5 months ago by Biostar ♦♦ 20
0
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0
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286
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0
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low alignment rate with bowtie2 of ChIP-seq data 150bp pair end
bowtie2 chip-seq bwa low alignment rate written 5 months ago by Shuang He • 0
4
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2
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8.5k
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2
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Error: Could not find Bowtie 2 index files (GRCh38.*.bt2l)
bowtie2 tophat tophat2 bowtie rna-seq written 3.3 years ago by ashMC • 10 • updated 5 months ago by Arnaud Ceol • 850
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878
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bowtie2 error "Read xyz has more quality values than read characters" -> signal 6 (ABRT)
bowtie2 fastq rna-seq written 6 months ago by normanreppingen • 0
0
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1
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224
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1
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Mapping of long read to extremely small reference sequence
bowtie2 small reference mapping bwa written 6 months ago by Rajesh Detroja • 120
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