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<prev • 352 results • page 1 of 12 • next >
2
votes
1
answer
67
views
1
answer
bowtie2 error "Read xyz has more quality values than read characters" -> signal 6 (ABRT)
bowtie2 fastq rna-seq written 5 days ago by normanreppingen • 0
0
votes
1
answer
105
views
1
answer
Mapping of long read to extremely small reference sequence
bowtie2 small reference mapping bwa written 22 days ago by Rajesh Detroja • 60
0
votes
0
answers
101
views
0
answers
Issue with Bowtie2 mapping
trimmomatic bowtie2 paired-end mapping written 9 days ago by reza • 210
0
votes
1
answer
92
views
1
answer
.fai index in BWA / bowtie / bowtie2 / minimap2
minimap2 bowtie2 bwa bowtie index written 20 days ago by Severus Snape • 0 • updated 20 days ago by h.mon ♦ 26k
0
votes
1
answer
142
views
1
answer
Bowtie2 simple alignment errors?
bowtie2 alignment bowtie written 28 days ago by vctrm67 • 0 • updated 28 days ago by h.mon ♦ 26k
4
votes
3
answers
204
views
3
answers
Bowtie2 hg19 reference for gatk MuTect
gatk bowtie2 written 5 weeks ago by varsha619 • 80 • updated 5 weeks ago by h.mon ♦ 26k
1
vote
2
answers
261
views
2
answers
isolate reads from a paired-ended fastq files that fall within a certain bp range
3c alignment chip-seq bowtie2 written 7 weeks ago by nibhelim • 0 • updated 5 weeks ago by ATpoint ♦ 21k
1
vote
1
answer
586
views
1
answer
How to extract uniquely mapped reads in Bowtie2
bowtie2 alignment uniquely mapped reads written 9 months ago by Ankit • 110 • updated 6 weeks ago by jiaobingke • 20
0
votes
0
answers
109
views
0
answers
Bowtie 2 index files exist but return Error: Could not find Bowtie 2 index files (humanGRCh38.*.bt2l)
bowtie2 tophat rna-seq index written 6 weeks ago by skurkure • 0 • updated 6 weeks ago by genomax ♦ 70k
4
votes
1
answer
2.5k
views
1
answer
Illumina Pe Reads Mapping To Reference Genome
illumina metagenomics reference bowtie2 written 6.5 years ago by rohita.sinha • 0 • updated 7 weeks ago by Biostar ♦♦ 20
8
votes
2
answers
158
views
2
answers
Count mapped reads to genes reference
bowtie2 samtools rna-seq written 7 weeks ago by RPuni • 0 • updated 7 weeks ago by i.sudbery ♦ 5.2k
1
vote
0
answers
104
views
0
answers
Bowtie database of all bacterial and fungal complete genomes
bowtie2 metagenomics mapping shotgun written 8 weeks ago by c.e.chong • 10
25
votes
3
answers
13k
views
15 follow
3
answers
How To Extract Reads-Pairs Aligned Concordantly Exactly 1 Time?
bowtie2 mapping written 5.4 years ago by Rahul Sharma • 600 • updated 9 weeks ago by m.t.lorenc • 0
0
votes
0
answers
112
views
0
answers
Bowtie2 mapping algorithm
bowtie2 written 9 weeks ago by Ribas • 0
2
votes
0
answers
143
views
0
answers
understanding bowtie2 unmapped reads
bowtie2 fastq unmapped-reads written 10 weeks ago by Assa Yeroslaviz • 1.2k • updated 10 weeks ago by lieven.sterck ♦ 5.5k
2
votes
0
answers
154
views
0
answers
Bowtie2 Alignment Error
bowtie2 written 11 weeks ago by chaudharyc61 • 0 • updated 11 weeks ago by ATpoint ♦ 21k
0
votes
0
answers
255
views
0
answers
Bowtie2: Error: No input read files were valid
bowtie2 chip-seq written 3 months ago by 200dumplings • 0 • updated 3 months ago by h.mon ♦ 26k
1
vote
0
answers
247
views
0
answers
Bowtie2 Error: Saw ASCII character 10 but expected 33-based Phred qual
bowtie2 transcriptom mapping written 3 months ago by jaqx008 • 50
0
votes
0
answers
199
views
0
answers
Bowtie2 alignment scores for reads that "go beyond" the end of the reference
bowtie2 alignment mapping written 4 months ago by matthias • 0
0
votes
1
answer
247
views
1
answer
bowtie2 piped to samtools created many samtools.tmp.bam files, how to get the single .bam file?
bowtie2 alignment samtools sort written 4 months ago by dongchenchen • 10 • updated 4 months ago by h.mon ♦ 26k
1
vote
2
answers
283
views
5 follow
2
answers
do paired end reads both mapped to the same gene appear consecutive to each other in SAM file (using bowtie2)
bowtie2 sam shortreads written 4 months ago by Moses • 70 • updated 4 months ago by Devon Ryan ♦ 91k
5
votes
1
answer
374
views
1
answer
Can't locate Bowtie2 index files
bowtie2 alignment chip-seq written 4 months ago by kdc15 • 30 • updated 4 months ago by flogin • 150
1
vote
0
answers
152
views
0
answers
bowtie2 alignment with ambiguous bases
bowtie2 N ambiguous written 4 months ago by wizofe • 0 • updated 4 months ago by genomax ♦ 70k
1
vote
0
answers
529
views
0
answers
"bowtie2 died with signal 9 (KILL)" error message, having trouble figuring out how to fix my script
software error assembly alignment bowtie2 written 6 months ago by meerapprasad • 10 • updated 4 months ago by Biostar ♦♦ 20
0
votes
1
answer
240
views
1
answer
why does qualimap2 shows different results for number of mismatches for bowtie2 and BWAMEM?
bwamem bowtie2 wes qualimap written 4 months ago by maria2019 • 30 • updated 4 months ago by h.mon ♦ 26k
2
votes
1
answer
2.6k
views
1
answer
ChIPseq paired-end bowtie2 concern regarding biological replicates
bowtie2 paired-end chip-seq written 5.0 years ago by NHEJ • 320 • updated 5 months ago by Biostar ♦♦ 20
1
vote
1
answer
335
views
1
answer
Bowtie2 MAPQ difference using local vs end-to-end alignment
bowtie2 alignment target ngs written 5 months ago by polys • 0 • updated 5 months ago by benformatics • 1.1k
1
vote
3
answers
5.2k
views
3
answers
bowtie2-align died with signal 11 (SEGV) (core dumped)
bowtie2 written 2.8 years ago by cvu • 140 • updated 5 months ago by sushuaikun • 10
2
votes
1
answer
367
views
1
answer
Mapping to transcriptome with bowtie2 vs mapping to genome using STAR
bowtie2 star rna-seq written 5 months ago by geek_y ♦ 9.8k
19
votes
6
answers
623
views
7 follow
6
answers
Tophat vs Bowtie alignment rates
bowtie2 tophat alignment written 5 months ago by am3 • 70
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