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<prev • 291 results • page 1 of 10 • next >
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bowtie2 paired end read alignment yieldsscaffold information for unmapped reads
bowtie2 unmapped tlen read alignment written 7 weeks ago by al.bodrug • 50 • updated 2 days ago by Biostar ♦♦ 20
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127
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problem with bowtie2 allignment
bowtie2 rna-seq written 4 days ago by khandaud15 • 0
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Doubt regarding Reference genome alignment
bowtie2 next-gen alignment assembly written 13 days ago by bic • 0 • updated 13 days ago by pbpanigrahi • 170
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bowtie2 paired end insertion length
bowtie2 ngs alignment paired end written 28 days ago by jesselee516 • 70 • updated 28 days ago by d-cameron • 1.8k
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How to extract aligned exactly 1 time in Single end read?
bowtie2 alignment bwa written 4 weeks ago by star • 60 • updated 4 weeks ago by zx8754 ♦ 4.6k
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no exact read?
R alignment chip-seq bwa bowtie2 written 4 weeks ago by star • 60
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bowtie2-build index files missing
bowtie2 bowtie-build mapping bowtie2-build written 4 weeks ago by juan.crescente • 20
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bowtie2 unmapped reads
bowtie2 rna-seq assembly written 5 weeks ago by Sjannie Lefevre • 30 • updated 5 weeks ago by Devon Ryan ♦ 81k
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bowtie2 mapping error: core dumped
bowtie2 alignment rna-seq written 9 weeks ago by lvyhwind • 0 • updated 9 weeks ago by genomax ♦ 51k
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6 follow
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Calculate Mapping Rate for an alignment to each sequence of a multi-fasta reference
flagstat samtools rna-seq mapping rate bowtie2 written 9 weeks ago by kspata • 30 • updated 9 weeks ago by h.mon ♦ 16k
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Mapping contigs & scaffolds to ref genome?
assembly mapping bowtie2 written 9 months ago by YOUSEUFS • 10 • updated 9 weeks ago by WouterDeCoster ♦ 30k
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Creating a Bowtie2 Index for S.Purpuratus to use in Galaxy
bowtie2 galaxy reference genome bowtie alignment written 10 weeks ago by alice_pieplow • 0 • updated 10 weeks ago by genomax ♦ 51k
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metagenomic assembly coverage, for multiple samples
bowtie2 metagenomics samtools coverage mpileup written 11 weeks ago by willnotburn • 40
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Low Mapping/Alignment rates with bowtie2 in mouse reduced genome
bowtie2 4cseq mapping libraryoffragments mm10 written 12 weeks ago by dzisis1986 • 20
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metaphlan2 unclassified contigs
bowtie2 metagenomics metaphlan written 5 months ago by srdjan.kasapovic • 0 • updated 3 months ago by Biostar ♦♦ 20
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6 follow
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Error in samtools view
samtools bash chip-seq bowtie2 written 3 months ago by Bella_p • 50 • updated 3 months ago by Pierre Lindenbaum ♦ 109k
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bowtie2 alignment has 'Duplicated sequence'
bowtie2 alignment sam bowtie2-build written 3 months ago by rmash • 0
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Bowtie2 mapping did not finish, can I still use the .sam file?
bowtie2 bowtie written 3 months ago by jon.brate • 160 • updated 3 months ago by WouterDeCoster ♦ 30k
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alignment score and other values for the whole paired-end alignment (with overlap)
bowtie2 paired-end alignment sam scores written 4 months ago by shim • 10 • updated 4 months ago by Devon Ryan ♦ 81k
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Find reads that completely cover short sequences
wgs bowtie2 written 4 months ago by valerie • 50 • updated 4 months ago by Jeffin Rockey • 520
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Signification of Bowtie2 Metrics file
bowtie2 bowtie rna-seq written 16 months ago by jlncrnt • 0 • updated 5 months ago by cera.fisher • 0
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Bowtie2 index file problem in RNA-Seq mapping
bowtie2 rna-seq index written 5 months ago by rekren • 10
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Bowtie2 build index
build index bowtie2 genome mapping written 5 months ago by rahman.samir33 • 0
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More loose criteria for bowtie2 mapping
bowtie2 mapping assembly written 3.3 years ago by vasilislenis • 90 • updated 5 months ago by predeus • 560
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How to align mouse transcriptome data using bowtie2?
bowtie2 alignment rna-seq written 5 months ago by sciencer • 60
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Could not locate a bowtie index corresponding to basename -- tried previously posted solutions
bowtie2 alignment error index written 5 months ago by nichgentry • 0 • updated 5 months ago by Vimalkumar Velayudhan • 180
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5 follow
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Penalty model of BWA MEM and BOWTIE2?
bowtie2 alignment bwa mem rna-seq written 6 months ago by sciencer • 60
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8 follow
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BWA MEM vs BOWTIE2 , which is best?
bwamem bowtie2 alignment rna-seq written 6 months ago by sciencer • 60 • updated 6 months ago by h.mon ♦ 16k
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bwa mem has more MAPQ values as 0 and 60
bwamem bowtie2 written 6 months ago by sciencer • 60
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How to calculate bowtie2 run time using python
bowtie2 alignment rna-seq python written 6 months ago by sciencer • 60 • updated 6 months ago by Devon Ryan ♦ 81k
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