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<prev • 384 results • page 1 of 13 • next >
2
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0
answers
63
views
0
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Bowtie2 adds insertions instead of allowing extention
insertions bowtie2 short reads aligning written 4 days ago by christiangriffioen • 20
5
votes
0
answers
127
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0
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how to build bowtie2 reference sequences
bowtie2 bowtie2-build igv tools reference sequence written 22 days ago by christiangriffioen • 20 • updated 22 days ago by genomax ♦ 83k
1
vote
0
answers
70
views
0
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extremly low properply paired rate using bowtie2
atacseq bowtie2 sequencing written 24 days ago by ljj_2016 • 0 • updated 24 days ago by ATpoint ♦ 34k
2
votes
0
answers
64
views
0
answers
General Tips On Using Optimal Alignment Flags For Specific Data
bowtie2 alignment bwa bioinformatics written 5 weeks ago by blake.mcmurray • 0
6
votes
1
answer
237
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1
answer
Low mapping rate with splice aware aligners (kallisto, HISAT2) but not bowtie2
bowtie2 kallisto rna-seq hisat2 written 6 weeks ago by a.palmer • 20
4
votes
2
answers
101
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2
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visualize my .BAM file in IGV
.bam alignment rna igv bowtie2 written 6 weeks ago by christiangriffioen • 20 • updated 6 weeks ago by Pierre Lindenbaum ♦ 128k
3
votes
2
answers
289
views
2
answers
Cannot install cutadapt or bowtie2 on windows, misunderstanding/ ignorant of something vital
bowtie2 windows error cutadapt written 8 weeks ago by Merebellum • 0
2
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1
answer
1.4k
views
1
answer
bowtie2 filter for maximum alignment score
bowtie2 alignment written 3.3 years ago by rishi • 10 • updated 10 weeks ago by Biostar ♦♦ 20
0
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0
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154
views
0
answers
bowtie2 aligment problems
bowtie2 next-gen alignment written 10 weeks ago by amitpande74 • 0
0
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1
answer
55
views
1
answer
BAM detect unalign region
bowtie2 written 3 months ago by muhammad.zarulhanifah • 0 • updated 3 months ago by Pierre Lindenbaum ♦ 128k
0
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1
answer
2.4k
views
1
answer
Calculate percentage mapped reads from Bowtie2/RSEM
flagstat resm-plot-model mapped reads rsem bowtie2 written 3.4 years ago by ando.kelli • 40 • updated 3 months ago by rohitsatyam102 • 90
2
votes
0
answers
171
views
0
answers
Finding gene matches using sequence reads?
reads bowtie2 metagenomic written 3 months ago by anabaena • 0 • updated 3 months ago by Fatima • 590
2
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1
answer
170
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1
answer
Bowtie2 Warnings after make command and errors after trying to use bowtie2-build
bowtie2 alignment python written 3 months ago by guto03 • 0
0
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0
answers
142
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0
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anomalous alignment with bowtie2
bowtie2 alignment bowtie blast score written 4 months ago by mark.rose • 40 • updated 4 months ago by genomax ♦ 83k
0
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1
answer
186
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1
answer
Not sure if pipe from bowtie2 to samtools is working?
chip-seq syntax samtools bowtie2 pipes written 4 months ago by ejwright • 0 • updated 4 months ago by ATpoint ♦ 34k
0
votes
0
answers
213
views
0
answers
Help with bowtie2 aligning PE Radseq sequences to reference genome
genome bowtie2 radseq mapping illumina written 4 months ago by imda • 10
7
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3
answers
3.0k
views
3
answers
Which aligner is best suited for circular human mitochondrial genome?
bowtie2 alignment bwa assembly written 4.5 years ago by nalandaatmi • 80 • updated 5 months ago by Jonathanjacobs • 250
2
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0
answers
314
views
0
answers
Error, fewer reads in file specified with -2 than in file specified with -1
wgs ngs sequencing bowtie2 written 6 months ago by manojkumarbioinfo • 60 • updated 6 months ago by h.mon ♦ 29k
4
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1
answer
1.4k
views
1
answer
Does bowtie2 take gz input files?
bowtie2 gzip input gz fq.gz gzip written 7 months ago by f.dinesh • 0 • updated 6 months ago by Biostar ♦♦ 20
0
votes
0
answers
220
views
0
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bowtie2 -all ... multiple alignment Chip-seq
multiple alignment bowtie2 alignment chip-seq written 6 months ago by poltora4enko • 0
1
vote
0
answers
165
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0
answers
Plotting range/type of discordance in alignment data
bowtie2 sequence alignment written 6 months ago by rbronste • 360
1
vote
0
answers
189
views
0
answers
Error : viGEN : bowtie2 Alignment - No input read files were valid
bowtie2 allignnment rna-seq written 7 months ago by venura • 30
1
vote
1
answer
173
views
1
answer
How to view read mapping from Bowtie2, Samtools, etc
bowtie2 samtools bowtie readmapping written 7 months ago by ksipes • 0 • updated 7 months ago by Asaf ♦ 7.6k
0
votes
1
answer
272
views
1
answer
Aligning multiple Fastq files using Bowtie2
bowtie2 fastq alignment rna-seq written 7 months ago by deepak18 • 10 • updated 7 months ago by WouterDeCoster ♦ 43k
2
votes
0
answers
455
views
0
answers
Bowtie2 Error: *.* has more quality values than read characters
software error bowtie2 fastq written 8 months ago by rbronste • 360 • updated 7 months ago by Biostar ♦♦ 20
0
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0
answers
290
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0
answers
RSEM output expected count interpretation
trinity rsem bowtie2 written 7 months ago by jonathon481 • 0
3
votes
2
answers
290
views
5 follow
2
answers
Tophat Usage difficulty?
bowtie2 tophat alignment mapping written 8 months ago by jaqx008 • 70
0
votes
1
answer
627
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1
answer
Bowtie2 alignment help for ATAC-seq
bowtie2 alignment data analysis atac-seq written 8 months ago by mrs.whirly • 0 • updated 8 months ago by ATpoint ♦ 34k
0
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0
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257
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0
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ATAC seq enhancer help
atacseq bowtie2 enhancers alignment dna written 8 months ago by mrs.whirly • 0
0
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0
answers
276
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0
answers
Minimal mapping score of bowtie2
bowtie2 chip-seq mapping written 8 months ago by dcheng1 • 0
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