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<prev • 331 results • page 1 of 12 • next >
2
votes
1
answer
2.4k
views
1
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ChIPseq paired-end bowtie2 concern regarding biological replicates
bowtie2 paired-end chip-seq written 4.6 years ago by NHEJ • 320 • updated 2 days ago by Biostar ♦♦ 20
1
vote
1
answer
80
views
1
answer
Bowtie2 MAPQ difference using local vs end-to-end alignment
bowtie2 alignment target ngs written 6 days ago by polys • 0 • updated 6 days ago by benformatics • 640
0
votes
3
answers
4.0k
views
3
answers
bowtie2-align died with signal 11 (SEGV) (core dumped)
bowtie2 written 2.3 years ago by cvu • 130 • updated 7 days ago by sushuaikun • 0
2
votes
1
answer
94
views
1
answer
Mapping to transcriptome with bowtie2 vs mapping to genome using STAR
bowtie2 star rna-seq written 8 days ago by geek_y ♦ 9.3k
19
votes
6
answers
348
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7 follow
6
answers
Tophat vs Bowtie alignment rates
bowtie2 tophat alignment written 23 days ago by am3 • 70
6
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0
answers
105
views
0
answers
Bowtie 2 error?
bowtie2 chip-seq aligne written 10 days ago by star • 130
1
vote
0
answers
199
views
0
answers
Iterative trimming using bowtie
bowtie2 iterative trimming alignment atac-seq written 8 weeks ago by ancient_learner • 610 • updated 19 days ago by Biostar ♦♦ 20
4
votes
1
answer
103
views
1
answer
How to remove bam files that don't contain matching reads
bowtie2 bam samtools written 20 days ago by samlambrechts299 • 130 • updated 20 days ago by Pierre Lindenbaum ♦ 118k
2
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0
answers
88
views
0
answers
bowtie2 and FLASh
bowtie2 written 23 days ago by Fedster • 30
0
votes
1
answer
92
views
1
answer
ERROR: bowtie2 align exited with value 1
bowtie2 next-gen appimage alignment written 5 weeks ago by dharris8573 • 0 • updated 5 weeks ago by h.mon ♦ 24k
1
vote
0
answers
169
views
0
answers
"bowtie2 died with signal 9 (KILL)" error message, having trouble figuring out how to fix my script
software error assembly alignment bowtie2 written 6 weeks ago by meerapprasad • 10 • updated 6 weeks ago by genomax ♦ 64k
2
votes
1
answer
1.8k
views
1
answer
bowtie2-align exited with value 139
software error bowtie2 next-gen alignment assembly written 17 months ago by anu014 • 160 • updated 7 weeks ago by msg • 0
10
votes
1
answer
216
views
1
answer
why reads align to other coordinates?
bowtie2 tophat alignment rna-seq align written 8 weeks ago by star • 130
1
vote
1
answer
174
views
1
answer
Filtering fastq vs BAM for fragment size range
bowtie2 fastq alignment bam written 3 months ago by rbronste • 230
9
votes
4
answers
586
views
7 follow
4
answers
How to write the output in snakefile (snakemake) for bowtie2-build
bowtie2 snakemake bowtie2-build snakefile written 5 months ago by c.clarido • 40 • updated 3 months ago by zorrilla • 0
6
votes
1
answer
235
views
5 follow
1
answer
Help with .sam files _1,_2 from bowtie2 output into svDetect
genome assembly alignment svdetect bowtie2 written 3 months ago by sxd • 0 • updated 3 months ago by RamRS ♦ 20k
1
vote
1
answer
178
views
1
answer
Bowtie2 reports no secondary alignments
bowtie2 alignment written 3 months ago by goodez • 460
0
votes
1
answer
2.5k
views
1
answer
Bowtie2 align not working
bowtie2 windows align written 4.8 years ago by K.Nijbroek • 100 • updated 3 months ago by Biostar ♦♦ 20
0
votes
0
answers
298
views
0
answers
bowtie2-align exited with value 139 ?
software error bowtie2 alignment chip-seq rna-seq written 3 months ago by star • 130
4
votes
0
answers
238
views
0
answers
How to extract read-pairs that aligned multiple times?
bowtie2 samtools written 4 months ago by fanicesiza • 10 • updated 3 months ago by Biostar ♦♦ 20
5
votes
1
answer
437
views
1
answer
No mismatch allowed setting in Bowtie2 (-N 0 does not help)
bowtie2 alignment mismatch --score-min constant written 4 months ago by Ankit • 60
3
votes
0
answers
321
views
0
answers
featurecounts and DESEQ
bowtie2 featurecount deseq mirna written 3 months ago by anjuraas • 10
6
votes
1
answer
204
views
5 follow
1
answer
How to extract mapping features of multiple samples in one output?
bowtie2 chip-seq mapping multiqc rna-seq written 4 months ago by star • 130 • updated 4 months ago by h.mon ♦ 24k
1
vote
0
answers
306
views
0
answers
How to extract uniquely mapped reads in Bowtie2
bowtie2 alignment uniquely mapped reads written 4 months ago by Ankit • 60
1
vote
4
answers
3.0k
views
4
answers
Bowtie2 Reads that aligned concordantly exactly 1 time
bowtie2 samtools written 3.9 years ago by AW • 350 • updated 4 months ago by Biostar ♦♦ 20
3
votes
2
answers
242
views
2
answers
how to extract counts from bam/merge-bam without gtf
R samtools bowtie2 rna-seq hisat2 written 4 months ago by Shahzad • 10 • updated 4 months ago by michael.ante • 3.2k
4
votes
1
answer
375
views
1
answer
bowtie2 error: Read .... has more quality values than read characters.
assembly bowtie2 error read written 5 months ago by c.clarido • 40 • updated 4 months ago by Biostar ♦♦ 20
4
votes
1
answer
277
views
1
answer
Please tell me what's wrong with my tophat script?
bowtie2 tophat bowtie1 written 4 months ago by abdul.suboor123 • 0 • updated 4 months ago by WouterDeCoster ♦ 37k
5
votes
1
answer
367
views
1
answer
sam file not showing multi mapped reads
bowtie2 sam written 6 months ago by Moses • 60 • updated 4 months ago by Biostar ♦♦ 20
3
votes
1
answer
275
views
1
answer
very low Bowtie2 mapping rate
bowtie2 written 4 months ago by afli • 170
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