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<prev • 410 results • page 1 of 14 • next >
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89
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Merging bowtie output
bowtie2 fastq alignment bowtie assembly written 11 days ago by Sbrillo • 0
1
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1
answer
106
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1
answer
Hardware requirements for bowtie2/STAR RNA-seq alignment
illumina bowtie2 star bowtie rna-seq written 21 days ago by MatStat • 130
3
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3
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890
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3
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Cannot install cutadapt or bowtie2 on windows, misunderstanding/ ignorant of something vital
bowtie2 windows error cutadapt written 10 months ago by Merebellum • 0
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156
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Trying to understand samtools -f and -F
alignments bowtie2 samtools mapping written 5 weeks ago by shibl_a • 20
6
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1
answer
178
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1
answer
bowtie2 shell script
bowtie2 shellscript written 5 weeks ago by amitpande74 • 10 • updated 5 weeks ago by ATpoint ♦ 44k
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131
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0
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Issue indexing a genome with bowtie2
software error bowtie2 written 5 weeks ago by Rox • 1.3k
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141
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bowtie2 making new indices
bowtie2 new indices written 7 weeks ago by amitpande74 • 10
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1
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282
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1
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bowtie2-align died with signal 2 (INT)
bowtie2 bowtie written 3 months ago by mailard • 0 • updated 7 weeks ago by Qiongyi • 100
2
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2
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131
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2
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Getting irregular bam files when running bowtie2 with the -un-conc command
bowtie2 written 11 weeks ago by langziv • 0
3
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181
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0
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bowtie2 giving 0% alignment rato across all samples
bowtie2 alignment paired-end reads written 3 months ago by v.berriosfarias • 10
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140
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BWA cigar not corresponding to reality
bowtie2 alignment mapping bwa cigar written 11 weeks ago by ADDNOTHIING • 10 • updated 11 weeks ago by ATpoint ♦ 44k
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0
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158
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0
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Determine mapped reads per scaffold in bam file: alternatives to samtools idxstat
bowtie2 alignment samtools mapping written 3 months ago by cssulliv • 20
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0
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184
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0
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Cut & run - bowtie2 dovetail option
bowtie2 dovetail cut and run written 3 months ago by blur • 150
2
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1.6k
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0
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Bowtie2 --strata problem
bowtie2 strata written 5.3 years ago by Avi • 70 • updated 3 months ago by elsoja • 130
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1
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267
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5 follow
1
answer
Question: How to create a snakefile(snakemake) to align paired-end reads with bowtie2
bowtie2 snakemake snakefile written 3 months ago by daalsa98 • 10 • updated 3 months ago by Istvan Albert ♦♦ 86k
1
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1
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149
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1
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Clarifying the meaning of Bowtie2's default alignment mode (noob question)
bowtie2 written 3 months ago by Sam • 120 • updated 3 months ago by Istvan Albert ♦♦ 86k
1
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1
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295
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1
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bowtie2 using loop on bash with paired-ended reads
bowtie2 sequence alignment bash written 3 months ago by v.berriosfarias • 10 • updated 3 months ago by swbarnes2 ♦ 9.4k
0
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246
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0
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Bowtie2 alignment issues - huge file size for SAM file creation
bowtie2 alignment rna-seq written 3 months ago by dnljmrs • 0
11
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1
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317
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5 follow
1
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De novo transcriptome from PE reads with high multi-mapping rate (Bowtie2)
assembly read support rna-seq bowtie2 written 4 months ago by Dunois • 490
2
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1
answer
169
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1
answer
mapping to incomplete reference
bowtie2 metagenomics alignment mapping written 4 months ago by issia • 0 • updated 4 months ago by GenoMax ♦ 95k
4
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1
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1.2k
views
5 follow
1
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Bowtie2 alignment help for ATAC-seq
bowtie2 alignment data analysis atac-seq written 16 months ago by mrs.whirly • 0 • updated 4 months ago by ElCascador • 20
7
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3
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5.4k
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3
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How to filter unique reads from sam file?
bowtie2 next-gen alignment sequencing written 5.9 years ago by Medhat ♦ 8.8k • updated 5 months ago by Biostar ♦♦ 20
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0
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160
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0
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bowtie2 inpipe1 inpipe2
bowtie2 written 5 months ago by yliueagle • 230 • updated 5 months ago by _r_am ♦ 32k
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191
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0
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How to parse text correctly for bowtie2 --rg parameter?
bowtie2 written 5 months ago by MatthewP • 850
2
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0
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783
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5 follow
0
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Bowtie2 Alignment Error
bowtie2 written 20 months ago by chaudharyc61 • 40 • updated 5 months ago by Giovy • 0
0
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1
answer
217
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1
answer
Phred qual error after fastq trimming
bowtie2 next-gen mapping cutadapt written 5 months ago by yad.ghavi-helm • 0
2
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1
answer
213
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1
answer
bowtie2 maximum value of MAPQ
bowtie2 bowtie written 5 months ago by sami • 20 • updated 5 months ago by Dave Carlson • 420
1
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1
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687
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1
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Read alignment using Bowtie2
bowtie2 alignment score written 16 months ago by Ina • 0 • updated 5 months ago by Biostar ♦♦ 20
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1
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176
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1
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Read showing Insertion of 41 bases when aligned with BWA
bowtie2 variant bwa written 6 months ago by kspata • 70 • updated 6 months ago by swbarnes2 ♦ 9.4k
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160
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bowtie2-align exited with value 139
bowtie2 alignment rna-seq written 6 months ago by linas.kapocius • 10
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