Latest
Open
RNA-Seq
ChIP-Seq
SNP
Assembly
Tutorials
Tools
Jobs
Forum
Planet
All »
Home
Log In
Showing: bowtie2 • reset
or   Classic search
<prev • 251 results • page 1 of 9 • next >
3
votes
2
answers
85
views
2
answers
Bowtie2: gtf file - annotation file
gtf bowtie2 aligner written 1 day ago by Jessica_bioinfo • 10 • updated 1 day ago by Devon Ryan ♦ 71k
1
vote
0
answers
122
views
0
answers
Aligning multiple fastq files in Bowtie2
bowtie2 fastq alignment written 8 days ago by vineethmails • 0
1
vote
0
answers
116
views
0
answers
Which mapping tool takes read quality score into account
bowtie2 mapping bwa quality score written 12 days ago by Chen • 560 • updated 11 days ago by h.mon ♦ 8.7k
0
votes
1
answer
105
views
1
answer
bowtie2 malformed sam/bam files
bowtie2 mapping written 14 days ago by Damian Kao ♦ 14k
3
votes
1
answer
2.2k
views
1
answer
Bowtie2 alignment: Reads that aligned concordantly >1 times
bowtie2 alignment map bowtie score written 3.1 years ago by elfeusilva • 0 • updated 23 days ago by Biostar ♦♦ 20
0
votes
0
answers
149
views
0
answers
bowtie2 summary looks very weird. Neither concordant nor discordant.
bowtie2 rna-seq written 27 days ago by zhangzhenyusz • 20
2
votes
1
answer
200
views
1
answer
bowtie2: multi mapping Summary report
bowtie2 written 28 days ago by Jessica_bioinfo • 10 • updated 28 days ago by Devon Ryan ♦ 71k
0
votes
2
answers
864
views
2
answers
How to identify bowtie2 unique mapping using sam flag value?
flag bowtie2 sam rna-seq written 20 months ago by jinxinhao1988 • 0 • updated 29 days ago by Biostar ♦♦ 20
1
vote
0
answers
308
views
0
answers
how is TLEN calculated in bowtie2
bowtie2 alignment sam tlen bowtie written 8 weeks ago by shim • 0 • updated 4 weeks ago by Biostar ♦♦ 20
0
votes
1
answer
139
views
1
answer
Bowtie2 output alignments and non-alignments in same file
bowtie2 rna-seq written 4 weeks ago by zhangzhenyusz • 20 • updated 4 weeks ago by Brian Bushnell ♦ 14k
1
vote
1
answer
155
views
1
answer
Can bowtie2 mapping paired-end reads of different length?
genome bowtie2 written 4 weeks ago by whiteeagle115 • 10 • updated 4 weeks ago by Bioaln • 210
2
votes
0
answers
199
views
5 follow
0
answers
Error in bowtie2
genome bowtie2 mapping written 4 weeks ago by whiteeagle115 • 10
6
votes
3
answers
1.3k
views
3
answers
Error: segment-based junction search failed with err =-5
bowtie2 tophat rna-seq written 16 months ago by ihabyounis • 20 • updated 5 weeks ago by Isaac C. Joseph • 30
0
votes
0
answers
219
views
0
answers
Low Alignment Rate for TT2 Cells
tt2 bowtie2 mus musculus alignment mice written 5 weeks ago by angelo.hoi.chung.chan • 0
0
votes
0
answers
124
views
0
answers
Bowtie2 Alignment for breadth of coverage using -U and --no-unal taking a long time
bowtie2 written 5 weeks ago by taffners • 0
0
votes
1
answer
241
views
1
answer
Bowtie2 orientation mapping question
bowtie2 discordantly orientation written 6 weeks ago by Andrés Ribone • 0 • updated 6 weeks ago by Devon Ryan ♦ 71k
22
votes
2
answers
8.5k
views
14 follow
2
answers
How To Extract Reads-Pairs Aligned Concordantly Exactly 1 Time?
bowtie2 mapping written 3.5 years ago by Rahul Sharma • 520 • updated 6 weeks ago by josm • 0
4
votes
1
answer
233
views
1
answer
Bowtie2 mapping of (several, long) contigs in fasta to a reference sequence - contig sequences only mapped as 60 bp
de novo bowtie2 sequence alignment written 7 weeks ago by kalfsnes • 0
0
votes
1
answer
190
views
1
answer
Galaxy Bowtie2 fastq recognition
bowtie2 fastq galaxy written 8 weeks ago by rbronste • 140
1
vote
1
answer
169
views
1
answer
Does anyone have a cheatsheet to compare Usearch and Bowtie2 performance in different situation?
usearch bowtie2 next-gen alignment written 8 weeks ago by m.koohi.m • 70 • updated 8 weeks ago by h.mon ♦ 8.7k
0
votes
0
answers
313
views
0
answers
bowtie2 - Can anybody explain the mismatches in the alignment if no mismatches are allowed in the seed?
bowtie2 alignment seeds bowtie mismatches written 12 weeks ago by shim • 0 • updated 8 weeks ago by Biostar ♦♦ 20
4
votes
0
answers
218
views
0
answers
unmapped reads by Tophat can be aligned by Bowtie2
bowtie2 tophat chip-seq written 8 weeks ago by zhangzhenyusz • 20 • updated 8 weeks ago by Alex Reynolds ♦ 20k
1
vote
0
answers
185
views
0
answers
From sam data, how do I tell from which fastq file each read came from?
bowtie2 sam read file origin parsing written 9 weeks ago by bitjunkie • 40
0
votes
2
answers
206
views
2
answers
align spike in database
bowtie2 spike-in rna-seq fastqc written 9 weeks ago by mail4malla • 0 • updated 9 weeks ago by swbarnes2 ♦ 2.8k
0
votes
0
answers
205
views
0
answers
bowtie2: user error or a bug?
unpaired bowtie2 multiple files written 9 weeks ago by bitjunkie • 40
1
vote
1
answer
181
views
1
answer
Samtools flagstat unpaired reads
bowtie2 bam samtools written 9 weeks ago by rbronste • 140 • updated 9 weeks ago by Pierre Lindenbaum ♦ 98k
0
votes
1
answer
156
views
1
answer
Bowtie2 parallelization on cluster
bowtie2 alignment written 9 weeks ago by rbronste • 140 • updated 9 weeks ago by erictleung • 90
4
votes
0
answers
1.7k
views
0
answers
Hisat2 versus Bowtie2
bowtie2 exome-sequencing hisat2 written 16 months ago by nalpas.nicolas • 20 • updated 11 weeks ago by Biostar ♦♦ 20
2
votes
1
answer
185
views
1
answer
Recommended program for evaluating aligner sensitivity
bowtie2 stampy soap smalt bwa written 12 weeks ago by fiona.newberry • 60 • updated 12 weeks ago by mark.ziemann • 890
1
vote
0
answers
184
views
0
answers
sorting bowtie2 results using samtools sort
bowtie2 samtools sort written 12 weeks ago by ggman • 40
<prev • 251 results • page 1 of 9 • next >
Recent Votes
Recent Locations • All »
  • France, 1 minute ago
  • United Kingdom, 3 minutes ago
  • United States, 3 minutes ago
Recent Awards • All »
Recent Replies
Content
Help
Access
Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 1556 users visited in the last hour