Showing: bowtie2reset
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Bowtie2: gtf file - annotation file
gtf bowtie2 aligner written 1 day ago by Jessica_bioinfo10 • updated 1 day ago by Devon Ryan71k
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Which mapping tool takes read quality score into account
bowtie2 mapping bwa quality score written 12 days ago by Chen560 • updated 11 days ago by h.mon8.7k
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Bowtie2 alignment: Reads that aligned concordantly >1 times
bowtie2 alignment map bowtie score written 3.1 years ago by elfeusilva0 • updated 23 days ago by Biostar ♦♦ 20
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bowtie2: multi mapping Summary report
bowtie2 written 28 days ago by Jessica_bioinfo10 • updated 28 days ago by Devon Ryan71k
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How to identify bowtie2 unique mapping using sam flag value?
flag bowtie2 sam rna-seq written 20 months ago by jinxinhao19880 • updated 29 days ago by Biostar ♦♦ 20
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how is TLEN calculated in bowtie2
bowtie2 alignment sam tlen bowtie written 8 weeks ago by shim0 • updated 4 weeks ago by Biostar ♦♦ 20
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Bowtie2 output alignments and non-alignments in same file
bowtie2 rna-seq written 4 weeks ago by zhangzhenyusz20 • updated 4 weeks ago by Brian Bushnell14k
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Can bowtie2 mapping paired-end reads of different length?
genome bowtie2 written 4 weeks ago by whiteeagle11510 • updated 4 weeks ago by Bioaln210
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Error in bowtie2
genome bowtie2 mapping written 4 weeks ago by whiteeagle11510
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Error: segment-based junction search failed with err =-5
bowtie2 tophat rna-seq written 16 months ago by ihabyounis20 • updated 5 weeks ago by Isaac C. Joseph 30
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Bowtie2 orientation mapping question
bowtie2 discordantly orientation written 6 weeks ago by AndrĂ©s Ribone0 • updated 6 weeks ago by Devon Ryan71k
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How To Extract Reads-Pairs Aligned Concordantly Exactly 1 Time?
bowtie2 mapping written 3.5 years ago by Rahul Sharma520 • updated 6 weeks ago by josm0
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unmapped reads by Tophat can be aligned by Bowtie2
bowtie2 tophat chip-seq written 8 weeks ago by zhangzhenyusz20 • updated 8 weeks ago by Alex Reynolds20k
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align spike in database
bowtie2 spike-in rna-seq fastqc written 9 weeks ago by mail4malla0 • updated 9 weeks ago by swbarnes22.8k
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Samtools flagstat unpaired reads
bowtie2 bam samtools written 9 weeks ago by rbronste140 • updated 9 weeks ago by Pierre Lindenbaum98k
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Bowtie2 parallelization on cluster
bowtie2 alignment written 9 weeks ago by rbronste140 • updated 9 weeks ago by erictleung90
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Hisat2 versus Bowtie2
bowtie2 exome-sequencing hisat2 written 16 months ago by nalpas.nicolas20 • updated 11 weeks ago by Biostar ♦♦ 20
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Recommended program for evaluating aligner sensitivity
bowtie2 stampy soap smalt bwa written 12 weeks ago by fiona.newberry60 • updated 12 weeks ago by mark.ziemann890
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