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<prev • 402 results • page 1 of 14 • next >
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Determine mapped reads per scaffold in bam file: alternatives to samtools idxstat
bowtie2 alignment samtools mapping written 20 minutes ago by cssulliv • 20
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bowtie2 giving 0% alignment rato across all samples
bowtie2 alignment paired-end reads written 2 hours ago by v.berriosfarias • 0
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Cut & run - bowtie2 dovetail option
bowtie2 dovetail cut and run written 4 days ago by blur • 140
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Bowtie2 --strata problem
bowtie2 strata written 5.1 years ago by Avi • 70 • updated 7 days ago by elsoja • 120
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Question: How to create a snakefile(snakemake) to align paired-end reads with bowtie2
bowtie2 snakemake snakefile written 8 days ago by daalsa98 • 0 • updated 8 days ago by Istvan Albert ♦♦ 85k
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Clarifying the meaning of Bowtie2's default alignment mode (noob question)
bowtie2 written 10 days ago by Sam • 50 • updated 10 days ago by Istvan Albert ♦♦ 85k
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bowtie2 using loop on bash with paired-ended reads
bowtie2 sequence alignment bash written 11 days ago by v.berriosfarias • 0 • updated 11 days ago by swbarnes2 ♦ 8.9k
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73
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bowtie2-align died with signal 2 (INT)
bowtie2 bowtie written 15 days ago by mailard • 0
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113
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Bowtie2 alignment issues - huge file size for SAM file creation
bowtie2 alignment rna-seq written 23 days ago by dnljmrs • 0
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235
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De novo transcriptome from PE reads with high multi-mapping rate (Bowtie2)
assembly read support rna-seq bowtie2 written 4 weeks ago by Dunois • 150
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115
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mapping to incomplete reference
bowtie2 metagenomics alignment mapping written 5 weeks ago by issia • 0 • updated 5 weeks ago by genomax ♦ 91k
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1
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Bowtie2 alignment help for ATAC-seq
bowtie2 alignment data analysis atac-seq written 13 months ago by mrs.whirly • 0 • updated 5 weeks ago by ElCascador • 20
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How to filter unique reads from sam file?
bowtie2 next-gen alignment sequencing written 5.7 years ago by Medhat ♦ 8.8k • updated 9 weeks ago by Biostar ♦♦ 20
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bowtie2 inpipe1 inpipe2
bowtie2 written 9 weeks ago by yliueagle • 220 • updated 9 weeks ago by RamRS ♦ 30k
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How to parse text correctly for bowtie2 --rg parameter?
bowtie2 written 9 weeks ago by MatthewP • 780
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653
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5 follow
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Bowtie2 Alignment Error
bowtie2 written 17 months ago by chaudharyc61 • 30 • updated 9 weeks ago by Giovy • 0
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151
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Phred qual error after fastq trimming
bowtie2 next-gen mapping cutadapt written 10 weeks ago by yad.ghavi-helm • 0
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156
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bowtie2 maximum value of MAPQ
bowtie2 bowtie written 10 weeks ago by sami • 20 • updated 10 weeks ago by Dave Carlson • 390
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Read alignment using Bowtie2
bowtie2 alignment score written 13 months ago by Ina • 0 • updated 11 weeks ago by Biostar ♦♦ 20
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116
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1
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Read showing Insertion of 41 bases when aligned with BWA
bowtie2 variant bwa written 3 months ago by kspata • 70 • updated 3 months ago by swbarnes2 ♦ 8.9k
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113
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bowtie2-align exited with value 139
bowtie2 alignment rna-seq written 3 months ago by linas.kapocius • 0
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bowtie2 '-a' does not return all alignments
bowtie2 alignment sam score written 3 months ago by shim • 10
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STAR/ Bowtie2: number of matched base
bowtie2 ngs alignment star written 3.0 years ago by ResearchR • 80
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204
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What is wrong with my bowtie2 index?
bowtie2 rrna written 4 months ago by ksh4718 • 0
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126
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alignment strategies for rna fusion
bowtie2 fusion alignment rna-seq written 4 months ago by from the mountains • 110
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148
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Bowtie2 adds insertions instead of allowing extention
insertions bowtie2 short reads aligning written 5 months ago by christiangriffioen • 20
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how to build bowtie2 reference sequences
bowtie2 bowtie2-build igv tools reference sequence written 5 months ago by christiangriffioen • 20 • updated 5 months ago by genomax ♦ 91k
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extremly low properply paired rate using bowtie2
atacseq bowtie2 sequencing written 5 months ago by ljj_2016 • 0 • updated 5 months ago by ATpoint ♦ 40k
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108
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General Tips On Using Optimal Alignment Flags For Specific Data
bowtie2 alignment bwa bioinformatics written 6 months ago by blake.mcmurray • 0
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Low mapping rate with splice aware aligners (kallisto, HISAT2) but not bowtie2
bowtie2 kallisto rna-seq hisat2 written 6 months ago by a.palmer • 20
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