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<prev • 322 results • page 1 of 11 • next >
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Iterative trimming using bowtie
bowtie2 iterative trimming alignment atac-seq written 15 hours ago by ancient_learner • 610
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128
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1
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Filtering fastq vs BAM for fragment size range
bowtie2 fastq alignment bam written 5 weeks ago by rbronste • 230
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4
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419
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7 follow
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How to write the output in snakefile (snakemake) for bowtie2-build
bowtie2 snakemake bowtie2-build snakefile written 3 months ago by c.clarido • 40 • updated 5 weeks ago by zorrilla • 0
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192
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5 follow
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Help with .sam files _1,_2 from bowtie2 output into svDetect
genome assembly alignment svdetect bowtie2 written 7 weeks ago by sxd • 0 • updated 6 weeks ago by RamRS ♦ 20k
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123
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Bowtie2 reports no secondary alignments
bowtie2 alignment written 7 weeks ago by goodez • 420
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Bowtie2 align not working
bowtie2 windows align written 4.6 years ago by K.Nijbroek • 100 • updated 7 weeks ago by Biostar ♦♦ 20
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201
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bowtie2-align exited with value 139 ?
software error bowtie2 alignment chip-seq rna-seq written 8 weeks ago by star • 80
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190
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How to extract read-pairs that aligned multiple times?
bowtie2 samtools written 12 weeks ago by fanicesiza • 10 • updated 8 weeks ago by Biostar ♦♦ 20
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333
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No mismatch allowed setting in Bowtie2 (-N 0 does not help)
bowtie2 alignment mismatch --score-min constant written 9 weeks ago by Ankit • 60
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238
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featurecounts and DESEQ
bowtie2 featurecount deseq mirna written 8 weeks ago by anjuraas • 10
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5 follow
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How to extract mapping features of multiple samples in one output?
bowtie2 chip-seq mapping multiqc rna-seq written 8 weeks ago by star • 80 • updated 8 weeks ago by h.mon ♦ 22k
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203
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How to extract uniquely mapped reads in Bowtie2
bowtie2 alignment uniquely mapped reads written 9 weeks ago by Ankit • 60
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4
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Bowtie2 Reads that aligned concordantly exactly 1 time
bowtie2 samtools written 3.7 years ago by AW • 350 • updated 10 weeks ago by Biostar ♦♦ 20
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how to extract counts from bam/merge-bam without gtf
R samtools bowtie2 rna-seq hisat2 written 10 weeks ago by Shahzad • 10 • updated 10 weeks ago by michael.ante • 2.9k
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bowtie2 error: Read .... has more quality values than read characters.
assembly bowtie2 error read written 3 months ago by c.clarido • 40 • updated 10 weeks ago by Biostar ♦♦ 20
4
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1
answer
219
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1
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Please tell me what's wrong with my tophat script?
bowtie2 tophat bowtie1 written 11 weeks ago by abdul.suboor123 • 0 • updated 11 weeks ago by WouterDeCoster ♦ 36k
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1
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271
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1
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sam file not showing multi mapped reads
bowtie2 sam written 4 months ago by mossigstamboulian • 30 • updated 11 weeks ago by Biostar ♦♦ 20
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207
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1
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very low Bowtie2 mapping rate
bowtie2 written 11 weeks ago by afli • 150
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203
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Why does bowtie2 Terminate with: Saw ASCII character 10 but expected 33-based Phred qual....?
bowtie2 sam mapping signleread written 3 months ago by jaqx008 • 40 • updated 3 months ago by Istvan Albert ♦♦ 78k
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208
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Bowtie2 reads alignment question
bowtie2 written 4 months ago by afli • 150 • updated 3 months ago by Biostar ♦♦ 20
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354
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9 follow
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How can I make a .bed file from my fasta?
fasta bed mapping bowtie2 written 3 months ago by jaqx008 • 40
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5 follow
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To fetch the reads which are being partially mapped to the genome
jvarkit hisat2 star rna-seq bowtie2 written 3 months ago by swadha • 20 • updated 3 months ago by genomax ♦ 60k
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1
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236
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1
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A constant problem with SAM file header
software error bowtie2 sam written 3 months ago by popescuiofelia • 0 • updated 3 months ago by h.mon ♦ 22k
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what is the mean of 'Error running 'prep_reads' ???
bowtie2 tophat2 written 3.4 years ago by F • 3.2k • updated 3 months ago by Biostar ♦♦ 20
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148
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Remove Sequences from existing Bowtie2 index
genome bowtie2 ngs index written 3 months ago by cvu • 120
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bowtie2 alignments "Error: No input read files were valid"
bowtie2 rna-seq error written 4 months ago by luzglongoria • 0 • updated 4 months ago by Devon Ryan ♦ 87k
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199
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1
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Bowtie2 alignment with file.txt
assembly rna-seq bowtie2 written 4 months ago by luzglongoria • 0
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Bowtie2 (ERR): bowtie2-align exited with value 1
bowtie2 alignment chip-seq written 2.9 years ago by s-root • 0 • updated 4 months ago by RamRS ♦ 20k
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420
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hisat2 / bowtie: read has more quality values than read characters
bowtie2 hisat2 bowtie hisat written 4 months ago by juan.crescente • 20
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Bowtie2: trying to implement position specific scoring options?
bowtie2 alignment score bowtie srna written 4 months ago by brismiller • 10
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