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<prev • 337 results • page 1 of 12 • next >
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Bowtie2 alignment scores for reads that "go beyond" the end of the reference
bowtie2 alignment mapping written 11 days ago by matthias • 0
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bowtie2 piped to samtools created many samtools.tmp.bam files, how to get the single .bam file?
bowtie2 alignment samtools sort written 10 days ago by dongchenchen • 0 • updated 10 days ago by h.mon ♦ 24k
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do paired end reads both mapped to the same gene appear consecutive to each other in SAM file (using bowtie2)
bowtie2 sam shortreads written 12 days ago by Moses • 60 • updated 12 days ago by Devon Ryan ♦ 89k
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Can't locate Bowtie2 index files
bowtie2 alignment chip-seq written 19 days ago by kdc15 • 30 • updated 17 days ago by flogin • 50
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bowtie2 alignment with ambiguous bases
bowtie2 N ambiguous written 19 days ago by wizofe • 0 • updated 19 days ago by genomax ♦ 65k
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"bowtie2 died with signal 9 (KILL)" error message, having trouble figuring out how to fix my script
software error assembly alignment bowtie2 written 10 weeks ago by meerapprasad • 10 • updated 20 days ago by Biostar ♦♦ 20
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why does qualimap2 shows different results for number of mismatches for bowtie2 and BWAMEM?
bwamem bowtie2 wes qualimap written 26 days ago by maria2019 • 10 • updated 23 days ago by h.mon ♦ 24k
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ChIPseq paired-end bowtie2 concern regarding biological replicates
bowtie2 paired-end chip-seq written 4.7 years ago by NHEJ • 320 • updated 4 weeks ago by Biostar ♦♦ 20
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Bowtie2 MAPQ difference using local vs end-to-end alignment
bowtie2 alignment target ngs written 5 weeks ago by polys • 0 • updated 5 weeks ago by benformatics • 690
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bowtie2-align died with signal 11 (SEGV) (core dumped)
bowtie2 written 2.4 years ago by cvu • 130 • updated 5 weeks ago by sushuaikun • 0
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Mapping to transcriptome with bowtie2 vs mapping to genome using STAR
bowtie2 star rna-seq written 5 weeks ago by geek_y ♦ 9.4k
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Tophat vs Bowtie alignment rates
bowtie2 tophat alignment written 7 weeks ago by am3 • 70
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148
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Bowtie 2 error?
bowtie2 chip-seq aligne written 5 weeks ago by star • 140
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Iterative trimming using bowtie
bowtie2 iterative trimming alignment atac-seq written 12 weeks ago by ancient_learner • 610 • updated 7 weeks ago by Biostar ♦♦ 20
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How to remove bam files that don't contain matching reads
bowtie2 bam samtools written 7 weeks ago by samlambrechts299 • 130 • updated 7 weeks ago by Pierre Lindenbaum ♦ 119k
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bowtie2 and FLASh
bowtie2 written 7 weeks ago by Fedster • 30
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ERROR: bowtie2 align exited with value 1
bowtie2 next-gen appimage alignment written 9 weeks ago by dharris8573 • 0 • updated 9 weeks ago by h.mon ♦ 24k
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bowtie2-align exited with value 139
software error bowtie2 next-gen alignment assembly written 18 months ago by anu014 • 160 • updated 11 weeks ago by msg • 0
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why reads align to other coordinates?
bowtie2 tophat alignment rna-seq align written 12 weeks ago by star • 140
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Filtering fastq vs BAM for fragment size range
bowtie2 fastq alignment bam written 4 months ago by rbronste • 230
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How to write the output in snakefile (snakemake) for bowtie2-build
bowtie2 snakemake bowtie2-build snakefile written 6 months ago by c.clarido • 40 • updated 4 months ago by zorrilla • 0
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Help with .sam files _1,_2 from bowtie2 output into svDetect
genome assembly alignment svdetect bowtie2 written 4 months ago by sxd • 0 • updated 4 months ago by RamRS ♦ 21k
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Bowtie2 reports no secondary alignments
bowtie2 alignment written 4 months ago by goodez • 460
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Bowtie2 align not working
bowtie2 windows align written 4.9 years ago by K.Nijbroek • 100 • updated 4 months ago by Biostar ♦♦ 20
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bowtie2-align exited with value 139 ?
software error bowtie2 alignment chip-seq rna-seq written 4 months ago by star • 140
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How to extract read-pairs that aligned multiple times?
bowtie2 samtools written 5 months ago by fanicesiza • 10 • updated 4 months ago by Biostar ♦♦ 20
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No mismatch allowed setting in Bowtie2 (-N 0 does not help)
bowtie2 alignment mismatch --score-min constant written 5 months ago by Ankit • 70
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featurecounts and DESEQ
bowtie2 featurecount deseq mirna written 4 months ago by anjuraas • 10
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How to extract mapping features of multiple samples in one output?
bowtie2 chip-seq mapping multiqc rna-seq written 5 months ago by star • 140 • updated 5 months ago by h.mon ♦ 24k
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How to extract uniquely mapped reads in Bowtie2
bowtie2 alignment uniquely mapped reads written 5 months ago by Ankit • 70
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