Showing: bowtie2reset
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Bowtie2 Reads that aligned concordantly exactly 1 time
bowtie2 samtools written 3.5 years ago by AW350 • updated 5 days ago by Biostar ♦♦ 20
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2
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how to extract counts from bam/merge-bam without gtf
R samtools bowtie2 rna-seq hisat2 written 6 days ago by Shahzad10 • updated 6 days ago by michael.ante2.7k
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150
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1
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bowtie2 error: Read .... has more quality values than read characters.
assembly bowtie2 error read written 6 weeks ago by c.clarido40 • updated 7 days ago by Biostar ♦♦ 20
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1
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Please tell me what's wrong with my tophat script?
bowtie2 tophat bowtie1 written 8 days ago by abdul.suboor1230 • updated 8 days ago by WouterDeCoster34k
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sam file not showing multi mapped reads
bowtie2 sam written 9 weeks ago by mossigstamboulian30 • updated 10 days ago by Biostar ♦♦ 20
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very low Bowtie2 mapping rate
bowtie2 written 13 days ago by afli140
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Bowtie2 reads alignment question
bowtie2 written 7 weeks ago by afli140 • updated 24 days ago by Biostar ♦♦ 20
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153
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7 follow
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125
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To fetch the reads which are being partially mapped to the genome
jvarkit hisat2 star rna-seq bowtie2 written 28 days ago by swadha20 • updated 27 days ago by genomax58k
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1
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A constant problem with SAM file header
software error bowtie2 sam written 29 days ago by popescuiofelia0 • updated 29 days ago by h.mon21k
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what is the mean of 'Error running 'prep_reads' ???
bowtie2 tophat2 written 3.2 years ago by F3.1k • updated 5 weeks ago by Biostar ♦♦ 20
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bowtie2 alignments "Error: No input read files were valid"
bowtie2 rna-seq error written 7 weeks ago by luzglongoria0 • updated 7 weeks ago by Devon Ryan86k
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Bowtie2 (ERR): bowtie2-align exited with value 1
bowtie2 alignment chip-seq written 2.7 years ago by s-root0 • updated 7 weeks ago by RamRS19k
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223
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1
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133
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bowtie2 filter for maximum alignment score
bowtie2 alignment written 21 months ago by rishi10 • updated 9 weeks ago by Biostar ♦♦ 20
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153
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Should --very-sensitive be combined with -no-1mm-upfront?
bowtie2 bowtie written 11 weeks ago by Lucy0 • updated 11 weeks ago by Devon Ryan86k
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185
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What is chr EBV in human sam file?
bowtie2 sam written 3 months ago by salamandra170 • updated 3 months ago by genomax58k
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7
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5 follow
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Mapping contigs & scaffolds to ref genome?
assembly mapping bowtie2 written 13 months ago by YOUSEUFS10 • updated 3 months ago by h.mon21k
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problem with bowtie2 allignment
bowtie2 rna-seq written 4 months ago by arshil0 • updated 3 months ago by Biostar ♦♦ 20
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131
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Doubt regarding Reference genome alignment
bowtie2 next-gen alignment assembly written 4 months ago by bic0 • updated 4 months ago by pbpanigrahi180
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