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<prev • 279 results • page 1 of 10 • next >
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Low Mapping/Alignment rates with bowtie2 in mouse reduced genome
bowtie2 4cseq mapping libraryoffragments mm10 written 7 days ago by dzisis1986 • 20
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123
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metaphlan2 unclassified contigs
bowtie2 metagenomics metaphlan written 10 weeks ago by srdjan.kasapovic • 0 • updated 8 days ago by Biostar ♦♦ 20
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2
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189
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6 follow
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Error in samtools view
samtools bash chip-seq bowtie2 written 28 days ago by Bella_p • 50 • updated 28 days ago by Pierre Lindenbaum ♦ 106k
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194
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1
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bowtie2 alignment has 'Duplicated sequence'
bowtie2 alignment sam bowtie2-build written 4 weeks ago by rmash • 0
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1
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86
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1
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Bowtie2 mapping did not finish, can I still use the .sam file?
bowtie2 bowtie written 4 weeks ago by jon.brate • 150 • updated 4 weeks ago by WouterDeCoster ♦ 27k
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138
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1
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alignment score and other values for the whole paired-end alignment (with overlap)
bowtie2 paired-end alignment sam scores written 7 weeks ago by shim • 10 • updated 7 weeks ago by Devon Ryan ♦ 78k
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130
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1
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Find reads that completely cover short sequences
wgs bowtie2 written 7 weeks ago by valerie • 40 • updated 7 weeks ago by Jeffin Rockey • 480
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1
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492
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1
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Signification of Bowtie2 Metrics file
bowtie2 bowtie rna-seq written 13 months ago by jlncrnt • 0 • updated 10 weeks ago by cera.fisher • 0
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2
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248
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2
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Bowtie2 index file problem in RNA-Seq mapping
bowtie2 rna-seq index written 10 weeks ago by rekren • 10
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297
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Bowtie2 build index
build index bowtie2 genome mapping written 11 weeks ago by rahman.samir33 • 0
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4
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More loose criteria for bowtie2 mapping
bowtie2 mapping assembly written 3.1 years ago by vasilislenis • 90 • updated 3 months ago by predeus • 480
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1
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275
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1
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How to align mouse transcriptome data using bowtie2?
bowtie2 alignment rna-seq written 3 months ago by sciencer • 30
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260
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1
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Could not locate a bowtie index corresponding to basename -- tried previously posted solutions
bowtie2 alignment error index written 3 months ago by nichgentry • 0 • updated 3 months ago by Vimalkumar Velayudhan • 110
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248
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5 follow
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Penalty model of BWA MEM and BOWTIE2?
bowtie2 alignment bwa mem rna-seq written 3 months ago by sciencer • 30
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751
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8 follow
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BWA MEM vs BOWTIE2 , which is best?
bwamem bowtie2 alignment rna-seq written 3 months ago by sciencer • 30 • updated 3 months ago by h.mon ♦ 13k
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302
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bwa mem has more MAPQ values as 0 and 60
bwamem bowtie2 written 3 months ago by sciencer • 30
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1
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213
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1
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How to calculate bowtie2 run time using python
bowtie2 alignment rna-seq python written 3 months ago by sciencer • 30 • updated 3 months ago by Devon Ryan ♦ 78k
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1
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341
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1
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BWA vs. bowtie
bowtie2 ngs bwa written 3 months ago by blur • 80 • updated 3 months ago by Devon Ryan ♦ 78k
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272
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How to improve alignment quality of ChIP-seq for single-end
bowtie2 quality alignment chip-seq single-end written 4 months ago by jule • 0
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1
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209
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1
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bowtie2 messes up headers with sequences in output
bowtie2 sam written 4 months ago by chefarov • 80 • updated 4 months ago by michael.ante • 2.4k
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297
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SAM/BAM: Extract sequences which aligned once and also don't overlap with any other sequence
bowtie2 alignment samtools sam bam written 4 months ago by chefarov • 80
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398
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Mitochondrial contamination over 90% in published atac-seq dataset.
mtdna mitochondrial contamination atac-seq bowtie2 written 4 months ago by daniele.avancini • 10
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2
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469
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5 follow
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Multiple fastq alignment with bowtie2
bowtie2 fastq alignment written 4 months ago by martyferr90 • 30 • updated 4 months ago by Devon Ryan ♦ 78k
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1
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384
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1
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Please help me, 'error encountered internal bowtie 2 exception (#1)'
genome assembly alignment bowtie2 written 4 months ago by samnatha1108 • 0 • updated 4 months ago by Devon Ryan ♦ 78k
4
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1
answer
280
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6 follow
1
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Set maximum insert size with BWA MEM?
bowtie2 atac-seq bwa written 5 months ago by James Ashmore • 2.3k • updated 5 months ago by Istvan Albert ♦♦ 76k
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211
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Should alignments with low query cover be removed?
bowtie2 abnormal alignments blastn written 5 months ago by 932477002 • 0 • updated 5 months ago by Buffo • 1.1k
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1
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Error message produced by bowtie2 (HiC-Pro)
bowtie2 hic-pro hichip alignment written 10 months ago by Gary • 440 • updated 5 months ago by ashwinkelkar • 10
2
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1.4k
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Bowtie2-build cannot build an index
bowtie2 index written 13 months ago by Gary • 440 • updated 5 months ago by Biostar ♦♦ 20
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bowtie2-align exited with value 139
software error bowtie2 next-gen alignment assembly written 6 months ago by anu014 • 140
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383
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Mapping contigs & scaffolds to ref genome?
assembly mapping bowtie2 written 6 months ago by YOUSEUFS • 10 • updated 6 months ago by colindaven • 600
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