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19
votes
6
answers
1.4k
views
7 follow
6
answers
Tophat vs Bowtie alignment rates
bowtie2 tophat alignment written 19 months ago by am370
30
votes
5
answers
11k
views
11 follow
5
answers
Split Read Mapping By Bwa And Bowtie2
bowtie2 mapping bwa sequencing written 7.6 years ago by Abhi1.5k • updated 5.7 years ago by syxbestmayer10
4
votes
5
answers
2.1k
views
5 follow
5
answers
uneven paired end reads in bowtie
bowtie2 cutadapt written 3.8 years ago by blur140 • updated 3.8 years ago by SES8.4k
13
votes
4
answers
25k
views
14 follow
4
answers
Trimming Adapters For Paired-End Sequences
bowtie2 paired-end adaptor trimming written 7.6 years ago by deepthithomaskannan320 • updated 6.8 years ago by Hongshan40
9
votes
4
answers
12k
views
4
answers
1
vote
4
answers
12k
views
4
answers
Bowtie2 Output, Concordant Vs. Discordant Mapping??
rnaseq bowtie2 written 7.1 years ago by mengqingying30 • updated 4.6 years ago by Ekalavya10
5
votes
4
answers
6.8k
views
4
answers
Understanding bowtie2 output
bowtie2 written 5.9 years ago by jyu429120
6
votes
4
answers
6.6k
views
5 follow
4
answers
More loose criteria for bowtie2 mapping
bowtie2 mapping assembly written 5.5 years ago by vasilislenis130 • updated 2.7 years ago by predeus1.4k
1
vote
4
answers
4.0k
views
4
answers
Bowtie2 Reads that aligned concordantly exactly 1 time
bowtie2 samtools written 5.4 years ago by AW350 • updated 22 months ago by Biostar ♦♦ 20
5
votes
4
answers
2.5k
views
4
answers
Updating the Bowtie2 to version 2.2.5
bowtie2 written 5.3 years ago by EVR570 • updated 5.2 years ago by Antonio R. Franco4.5k
8
votes
4
answers
1.8k
views
4
answers
Help: do I always have to re-open sequence file within a for loop in python?
python bowtie2 sam biopython written 4.7 years ago by pawlowac70 • updated 4.6 years ago by Peter5.8k
8
votes
4
answers
2.9k
views
5 follow
4
answers
Mapping contigs & scaffolds to ref genome?
assembly mapping bowtie2 written 2.9 years ago by YOUSEUFS10 • updated 2.2 years ago by h.mon31k
9
votes
4
answers
2.2k
views
8 follow
4
answers
26
votes
3
answers
15k
views
15 follow
3
answers
How To Extract Reads-Pairs Aligned Concordantly Exactly 1 Time?
bowtie2 mapping written 6.5 years ago by Rahul Sharma600 • updated 15 months ago by m.t.lorenc0
7
votes
3
answers
8.5k
views
7 follow
3
answers
Forum: How to calculate FPKM values of interested gene
bowtie2 fpkm cufflinks forum rna-seq written 6.2 years ago by Ginsea Chen130 • updated 6.2 years ago by Charles Warden7.9k
7
votes
3
answers
5.2k
views
3
answers
How to filter unique reads from sam file?
bowtie2 next-gen alignment sequencing written 5.6 years ago by Medhat8.7k • updated 29 days ago by Biostar ♦♦ 20
7
votes
3
answers
2.1k
views
3
answers
tophat2 mapping merged PE and nonmerged PE
merged bowtie2 ngs tophat2 written 5.5 years ago by apelin20470 • updated 5.5 years ago by Brian Bushnell17k
7
votes
3
answers
3.1k
views
3
answers
8
votes
3
answers
3.6k
views
3
answers
Error: segment-based junction search failed with err =-5
bowtie2 tophat rna-seq written 4.4 years ago by ihabyounis30 • updated 3.1 years ago by Isaac C. Joseph 80
1
vote
3
answers
7.6k
views
3
answers
bowtie2-align died with signal 11 (SEGV) (core dumped)
bowtie2 written 3.9 years ago by cvu170 • updated 18 months ago by sushuaikun10
4
votes
3
answers
550
views
3
answers
Bowtie2 hg19 reference for gatk MuTect
gatk bowtie2 written 14 months ago by varsha61990 • updated 14 months ago by h.mon31k
4
votes
2
answers
2.6k
views
2
answers
Error With Samtools
bowtie2 samtools written 8.2 years ago by Sameet290 • updated 7.0 years ago by Biostar ♦♦ 20
5
votes
2
answers
2.8k
views
6 follow
2
answers
Does Bowtie2 Map Multiple Reads To The Same Gene?
bowtie2 written 7.8 years ago by derekc1074120 • updated 7.8 years ago by Rahul Sharma600
1
vote
2
answers
2.4k
views
2
answers
7
votes
2
answers
9.9k
views
6 follow
2
answers
9
votes
2
answers
3.5k
views
6 follow
2
answers
Filtering Bed Files By Using Bedops
bedtools bed bowtie2 written 7.3 years ago by Raghav100 • updated 6.7 years ago by Biostar ♦♦ 20
8
votes
2
answers
12k
views
2
answers
Mismatch Option In Bowtie2
bowtie2 written 7.3 years ago by Varun Gupta1.1k • updated 4.6 years ago by poojayakshi10
0
votes
2
answers
2.8k
views
2
answers
Getting Error In Bowtie2
bowtie2 error written 7.2 years ago by deepthithomaskannan320 • updated 7.2 years ago by skymningen330
8
votes
2
answers
6.1k
views
2
answers
Does Bowtie2 Preform Unique Mapping
bowtie2 mapping written 7.2 years ago by Raghav100 • updated 4.3 years ago by merodev140
6
votes
2
answers
2.8k
views
2
answers
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