Showing: bowtie2reset
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19
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6
answers
830
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7 follow
6
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30
votes
5
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11k
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11 follow
5
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Split Read Mapping By Bwa And Bowtie2
bowtie2 mapping bwa sequencing written 6.8 years ago by Abhi1.5k • updated 4.9 years ago by syxbestmayer10
4
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5
answers
1.7k
views
5 follow
5
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uneven paired end reads in bowtie
bowtie2 cutadapt written 3.0 years ago by blur110 • updated 3.0 years ago by SES8.2k
13
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4
answers
24k
views
14 follow
4
answers
Trimming Adapters For Paired-End Sequences
bowtie2 paired-end adaptor trimming written 6.8 years ago by deepthithomaskannan300 • updated 6.0 years ago by Hongshan40
9
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4
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11k
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4
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1
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4
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11k
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4
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Bowtie2 Output, Concordant Vs. Discordant Mapping??
rnaseq bowtie2 written 6.3 years ago by mengqingying30 • updated 3.8 years ago by Ekalavya0
5
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4
answers
5.9k
views
4
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Understanding bowtie2 output
bowtie2 written 5.1 years ago by jyu429120
4
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4
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5.8k
views
4
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More loose criteria for bowtie2 mapping
bowtie2 mapping assembly written 4.7 years ago by vasilislenis100 • updated 22 months ago by predeus1.3k
1
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4
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3.5k
views
4
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Bowtie2 Reads that aligned concordantly exactly 1 time
bowtie2 samtools written 4.6 years ago by AW350 • updated 13 months ago by Biostar ♦♦ 20
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4
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2.2k
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4
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Updating the Bowtie2 to version 2.2.5
bowtie2 written 4.5 years ago by EVR570 • updated 4.4 years ago by Antonio R. Franco4.2k
8
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4
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1.7k
views
4
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Help: do I always have to re-open sequence file within a for loop in python?
python bowtie2 sam biopython written 3.9 years ago by pawlowac60 • updated 3.8 years ago by Peter5.8k
8
votes
4
answers
2.2k
views
5 follow
4
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Mapping contigs & scaffolds to ref genome?
assembly mapping bowtie2 written 2.1 years ago by YOUSEUFS10 • updated 16 months ago by h.mon28k
9
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4
answers
1.3k
views
7 follow
4
answers
8
votes
3
answers
11k
views
3
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Mismatch Option In Bowtie2
bowtie2 written 6.4 years ago by Varun Gupta1.1k • updated 3.8 years ago by poojayakshi10
25
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3
answers
14k
views
15 follow
3
answers
How To Extract Reads-Pairs Aligned Concordantly Exactly 1 Time?
bowtie2 mapping written 5.7 years ago by Rahul Sharma600 • updated 5 months ago by m.t.lorenc0
7
votes
3
answers
8.0k
views
7 follow
3
answers
Forum: How to calculate FPKM values of interested gene
bowtie2 fpkm cufflinks forum rna-seq written 5.4 years ago by Ginsea Chen130 • updated 5.4 years ago by Charles Warden7.5k
6
votes
3
answers
4.6k
views
3
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How to filter unique reads from sam file?
bowtie2 next-gen alignment sequencing written 4.8 years ago by Medhat8.6k • updated 4.8 years ago by Renesh1.8k
7
votes
3
answers
2.0k
views
3
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tophat2 mapping merged PE and nonmerged PE
merged bowtie2 ngs tophat2 written 4.7 years ago by apelin20470 • updated 4.7 years ago by Brian Bushnell17k
4
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3
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2.7k
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3
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1
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3
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1.1k
views
3
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Help with Bowtie2
bowtie2 alignment written 3.9 years ago by jaspreetk.dhanjal0
8
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3
answers
3.1k
views
3
answers
Error: segment-based junction search failed with err =-5
bowtie2 tophat rna-seq written 3.6 years ago by ihabyounis30 • updated 2.3 years ago by Isaac C. Joseph 80
1
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3
answers
5.9k
views
3
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bowtie2-align died with signal 11 (SEGV) (core dumped)
bowtie2 written 3.1 years ago by cvu140 • updated 8 months ago by sushuaikun10
4
votes
3
answers
298
views
3
answers
Bowtie2 hg19 reference for gatk MuTect
gatk bowtie2 written 5 months ago by varsha61980 • updated 5 months ago by h.mon28k
4
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2
answers
2.5k
views
2
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Error With Samtools
bowtie2 samtools written 7.4 years ago by Sameet290 • updated 6.2 years ago by Biostar ♦♦ 20
5
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2
answers
2.5k
views
6 follow
2
answers
Does Bowtie2 Map Multiple Reads To The Same Gene?
bowtie2 written 7.0 years ago by derekc1074120 • updated 7.0 years ago by Rahul Sharma600
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2
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2.3k
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2
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7
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2
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9.3k
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6 follow
2
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9
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2
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3.3k
views
6 follow
2
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Filtering Bed Files By Using Bedops
bedtools bed bowtie2 written 6.5 years ago by Raghav100 • updated 5.9 years ago by Biostar ♦♦ 20
0
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2
answers
2.4k
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2
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Getting Error In Bowtie2
bowtie2 error written 6.4 years ago by deepthithomaskannan300 • updated 6.4 years ago by skymningen330
8
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2
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5.6k
views
2
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Does Bowtie2 Preform Unique Mapping
bowtie2 mapping written 6.4 years ago by Raghav100 • updated 3.5 years ago by merodev140
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