Showing selected topics • reset
<prev • 404 results • page 1 of 14 • next >
26
votes
3
answers
16k
views
16 follow
3
answers
How To Extract Reads-Pairs Aligned Concordantly Exactly 1 Time?
bowtie2 mapping written 6.7 years ago by Rahul Sharma600 • updated 17 months ago by m.t.lorenc0
20
votes
1
answer
11k
views
16 follow
1
answer
Orientation in paired-end sequencing?
bowtie2 paired-end rna-seq orientation written 6.5 years ago by John Smith280 • updated 6.5 years ago by cts1.6k
13
votes
4
answers
25k
views
14 follow
4
answers
Trimming Adapters For Paired-End Sequences
bowtie2 paired-end adaptor trimming written 7.8 years ago by deepthithomaskannan320 • updated 6.9 years ago by Hongshan40
30
votes
5
answers
12k
views
11 follow
5
answers
Split Read Mapping By Bwa And Bowtie2
bowtie2 mapping bwa sequencing written 7.8 years ago by Abhi1.5k • updated 5.9 years ago by syxbestmayer10
9
votes
1
answer
1.9k
views
10 follow
1
answer
Bowtie2/HISAT using single-end to generate FPKM???
bowtie2 fpkm hisat rna-seq rpkm written 3.5 years ago by jamieson.pierce30 • updated 3.5 years ago by Brian Bushnell17k
3
votes
1
answer
2.3k
views
9 follow
1
answer
6
votes
1
answer
34k
views
8 follow
1
answer
Bowtie Building Index Issue
genome bowtie2 bowtie written 8.5 years ago by Arpssss40 • updated 8.5 years ago by Istvan Albert ♦♦ 85k
12
votes
1
answer
5.3k
views
8 follow
1
answer
19
votes
1
answer
8.0k
views
8 follow
1
answer
Tophat2 Mapping Qualities
bowtie2 tophat2 written 6.8 years ago by geek_y11k • updated 6.8 years ago by Devon Ryan97k
9
votes
2
answers
7.3k
views
8 follow
2
answers
10
votes
1
answer
6.8k
views
8 follow
1
answer
BWA MEM vs BOWTIE2 , which is best?
bwamem bowtie2 alignment rna-seq written 2.9 years ago by John210 • updated 2.9 years ago by h.mon31k
9
votes
4
answers
2.4k
views
8 follow
4
answers
7
votes
3
answers
8.6k
views
7 follow
3
answers
Forum: How to calculate FPKM values of interested gene
bowtie2 fpkm cufflinks forum rna-seq written 6.4 years ago by Ginsea Chen130 • updated 6.4 years ago by Charles Warden7.9k
19
votes
6
answers
1.5k
views
7 follow
6
answers
Tophat vs Bowtie alignment rates
bowtie2 tophat alignment written 21 months ago by am370
5
votes
2
answers
2.9k
views
6 follow
2
answers
Does Bowtie2 Map Multiple Reads To The Same Gene?
bowtie2 written 8.0 years ago by derekc1074120 • updated 8.0 years ago by Rahul Sharma600
7
votes
2
answers
10k
views
6 follow
2
answers
9
votes
2
answers
3.6k
views
6 follow
2
answers
Filtering Bed Files By Using Bedops
bedtools bed bowtie2 written 7.5 years ago by Raghav100 • updated 6.9 years ago by Biostar ♦♦ 20
10
votes
2
answers
2.6k
views
6 follow
2
answers
What Will Happen If One Read Can Map To Two Regions?
bowtie2 mapping bowtie written 6.9 years ago by microtan090240 • updated 6.9 years ago by Varun Gupta1.2k
3
votes
2
answers
6.6k
views
6 follow
2
answers
Soft Clipping
bowtie2 written 6.8 years ago by Gregor Rot450
6
votes
2
answers
7.9k
views
6 follow
2
answers
Issue with installing bowtie2
bowtie2 error installing written 3.8 years ago by seta1.4k • updated 3.1 years ago by Karma300
5
votes
1
answer
1.7k
views
6 follow
1
answer
Set maximum insert size with BWA MEM?
bowtie2 atac-seq bwa written 3.0 years ago by James Ashmore3.0k • updated 3.0 years ago by Istvan Albert ♦♦ 85k
5
votes
2
answers
3.3k
views
6 follow
2
answers
Multiple fastq alignment with bowtie2
bowtie2 fastq alignment written 3.0 years ago by martyferr9030 • updated 3.0 years ago by Devon Ryan97k
5
votes
2
answers
1.6k
views
6 follow
2
answers
Error in samtools view
samtools bash chip-seq bowtie2 written 2.7 years ago by Bella_p50 • updated 2.7 years ago by Pierre Lindenbaum131k
9
votes
2
answers
2.9k
views
6 follow
2
answers
1
vote
0
answers
2.3k
views
5 follow
0
answers
Presets And Dependent Parameters For Bowtie2/Tophat2
bowtie2 tophat2 written 7.7 years ago by blair20 • updated 6.9 years ago by Biostar ♦♦ 20
2
votes
2
answers
1.9k
views
5 follow
2
answers
Variant Discovery Paper To Repeat?
variant-calling bowtie2 samtools vcftools snp written 7.1 years ago by Alice300 • updated 7.1 years ago by Ashutosh Pandey12k
1
vote
0
answers
5.2k
views
5 follow
0
answers
Unaligned Reads From Bowtie2
bowtie2 written 7.1 years ago by deepthithomaskannan320
10
votes
1
answer
2.7k
views
5 follow
1
answer
6
votes
4
answers
6.8k
views
5 follow
4
answers
More loose criteria for bowtie2 mapping
bowtie2 mapping assembly written 5.7 years ago by vasilislenis130 • updated 2.9 years ago by predeus1.4k
2
votes
2
answers
3.6k
views
5 follow
2
answers
Mapping miRNA to the Human Genome with Bowtie2
bowtie2 htseq-count alignment mirna python written 4.0 years ago by gkuffel2270 • updated 3.9 years ago by apa@stowers500
<prev • 404 results • page 1 of 14 • next >

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 1166 users visited in the last hour