Showing: bowtie2reset
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20
votes
1
answer
9.5k
views
16 follow
1
answer
Orientation in paired-end sequencing?
bowtie2 paired-end rna-seq orientation written 5.5 years ago by John Smith260 • updated 5.5 years ago by cts1.6k
25
votes
3
answers
14k
views
15 follow
3
answers
How To Extract Reads-Pairs Aligned Concordantly Exactly 1 Time?
bowtie2 mapping written 5.7 years ago by Rahul Sharma600 • updated 6 months ago by m.t.lorenc0
13
votes
4
answers
24k
views
14 follow
4
answers
Trimming Adapters For Paired-End Sequences
bowtie2 paired-end adaptor trimming written 6.9 years ago by deepthithomaskannan300 • updated 6.0 years ago by Hongshan40
30
votes
5
answers
11k
views
11 follow
5
answers
Split Read Mapping By Bwa And Bowtie2
bowtie2 mapping bwa sequencing written 6.9 years ago by Abhi1.5k • updated 4.9 years ago by syxbestmayer10
9
votes
1
answer
1.6k
views
10 follow
1
answer
Bowtie2/HISAT using single-end to generate FPKM???
bowtie2 fpkm hisat rna-seq rpkm written 2.6 years ago by jamieson.pierce30 • updated 2.6 years ago by Brian Bushnell17k
3
votes
1
answer
1.2k
views
9 follow
1
answer
6
votes
1
answer
30k
views
8 follow
1
answer
Bowtie Building Index Issue
genome bowtie2 bowtie written 7.5 years ago by Arpssss40 • updated 7.5 years ago by Istvan Albert ♦♦ 82k
12
votes
1
answer
5.0k
views
8 follow
1
answer
19
votes
1
answer
7.4k
views
8 follow
1
answer
Tophat2 Mapping Qualities
bowtie2 tophat2 written 5.9 years ago by geek_y10k • updated 5.9 years ago by Devon Ryan93k
9
votes
2
answers
6.8k
views
8 follow
2
answers
10
votes
1
answer
4.8k
views
8 follow
1
answer
BWA MEM vs BOWTIE2 , which is best?
bwamem bowtie2 alignment rna-seq written 23 months ago by Jon160 • updated 23 months ago by h.mon29k
7
votes
3
answers
8.0k
views
7 follow
3
answers
Forum: How to calculate FPKM values of interested gene
bowtie2 fpkm cufflinks forum rna-seq written 5.5 years ago by Ginsea Chen130 • updated 5.5 years ago by Charles Warden7.5k
9
votes
4
answers
1.4k
views
7 follow
4
answers
19
votes
6
answers
841
views
7 follow
6
answers
5
votes
2
answers
2.5k
views
6 follow
2
answers
Does Bowtie2 Map Multiple Reads To The Same Gene?
bowtie2 written 7.1 years ago by derekc1074120 • updated 7.1 years ago by Rahul Sharma600
7
votes
2
answers
9.3k
views
6 follow
2
answers
9
votes
2
answers
3.3k
views
6 follow
2
answers
Filtering Bed Files By Using Bedops
bedtools bed bowtie2 written 6.5 years ago by Raghav100 • updated 5.9 years ago by Biostar ♦♦ 20
10
votes
2
answers
2.3k
views
6 follow
2
answers
What Will Happen If One Read Can Map To Two Regions?
bowtie2 mapping bowtie written 5.9 years ago by microtan090240 • updated 5.9 years ago by Varun Gupta1.1k
3
votes
2
answers
5.6k
views
6 follow
2
answers
Soft Clipping
bowtie2 written 5.8 years ago by Gregor Rot440
5
votes
2
answers
7.3k
views
6 follow
2
answers
Issue with installing bowtie2
bowtie2 error installing written 2.9 years ago by seta1.2k • updated 2.2 years ago by Karma210
4
votes
1
answer
1.1k
views
6 follow
1
answer
Set maximum insert size with BWA MEM?
bowtie2 atac-seq bwa written 2.1 years ago by James Ashmore2.7k • updated 2.1 years ago by Istvan Albert ♦♦ 82k
5
votes
2
answers
2.3k
views
6 follow
2
answers
Multiple fastq alignment with bowtie2
bowtie2 fastq alignment written 2.0 years ago by martyferr9030 • updated 2.0 years ago by Devon Ryan93k
5
votes
2
answers
1.0k
views
6 follow
2
answers
Error in samtools view
samtools bash chip-seq bowtie2 written 20 months ago by Bella_p50 • updated 20 months ago by Pierre Lindenbaum124k
9
votes
2
answers
1.8k
views
6 follow
2
answers
1
vote
0
answers
2.1k
views
5 follow
0
answers
Presets And Dependent Parameters For Bowtie2/Tophat2
bowtie2 tophat2 written 6.7 years ago by blair20 • updated 5.9 years ago by Biostar ♦♦ 20
2
votes
2
answers
1.8k
views
5 follow
2
answers
Variant Discovery Paper To Repeat?
variant-calling bowtie2 samtools vcftools snp written 6.2 years ago by Alice290 • updated 6.2 years ago by Ashutosh Pandey11k
1
vote
0
answers
4.5k
views
5 follow
0
answers
Unaligned Reads From Bowtie2
bowtie2 written 6.1 years ago by deepthithomaskannan300
10
votes
1
answer
2.4k
views
5 follow
1
answer
2
votes
2
answers
3.0k
views
5 follow
2
answers
Mapping miRNA to the Human Genome with Bowtie2
bowtie2 htseq-count alignment mirna python written 3.1 years ago by gkuffel2270 • updated 2.9 years ago by apa@stowers450
4
votes
5
answers
1.7k
views
5 follow
5
answers
uneven paired end reads in bowtie
bowtie2 cutadapt written 3.0 years ago by blur110 • updated 3.0 years ago by SES8.2k
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