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6
votes
1
answer
33k
views
8 follow
1
answer
Bowtie Building Index Issue
genome bowtie2 bowtie written 8.3 years ago by Arpssss40 • updated 8.3 years ago by Istvan Albert ♦♦ 84k
13
votes
4
answers
25k
views
14 follow
4
answers
Trimming Adapters For Paired-End Sequences
bowtie2 paired-end adaptor trimming written 7.6 years ago by deepthithomaskannan320 • updated 6.8 years ago by Hongshan40
0
votes
1
answer
18k
views
1
answer
Bowtie2 (ERR): bowtie2-align exited with value 1
bowtie2 alignment chip-seq written 4.6 years ago by s-root0 • updated 2.0 years ago by RamRS30k
26
votes
3
answers
15k
views
15 follow
3
answers
How To Extract Reads-Pairs Aligned Concordantly Exactly 1 Time?
bowtie2 mapping written 6.5 years ago by Rahul Sharma600 • updated 15 months ago by m.t.lorenc0
9
votes
4
answers
12k
views
4
answers
1
vote
4
answers
12k
views
4
answers
Bowtie2 Output, Concordant Vs. Discordant Mapping??
rnaseq bowtie2 written 7.1 years ago by mengqingying30 • updated 4.6 years ago by Ekalavya10
8
votes
2
answers
12k
views
2
answers
Mismatch Option In Bowtie2
bowtie2 written 7.2 years ago by Varun Gupta1.1k • updated 4.6 years ago by poojayakshi10
30
votes
5
answers
11k
views
11 follow
5
answers
Split Read Mapping By Bwa And Bowtie2
bowtie2 mapping bwa sequencing written 7.6 years ago by Abhi1.5k • updated 5.7 years ago by syxbestmayer10
20
votes
1
answer
11k
views
16 follow
1
answer
Orientation in paired-end sequencing?
bowtie2 paired-end rna-seq orientation written 6.3 years ago by John Smith280 • updated 6.3 years ago by cts1.6k
7
votes
2
answers
9.9k
views
6 follow
2
answers
3
votes
1
answer
9.9k
views
1
answer
Bowtie2: Why won't it recognize my index files?
bowtie2 written 5.7 years ago by Kristin Muench520 • updated 4.9 years ago by m.ghanatbari10
4
votes
2
answers
9.8k
views
2
answers
Error: Could not find Bowtie 2 index files (GRCh38.*.bt2l)
bowtie2 tophat tophat2 bowtie rna-seq written 3.9 years ago by ashMC10 • updated 13 months ago by Arnaud Ceol850
17
votes
2
answers
9.2k
views
2
answers
Bowtie 2 - is there a way to discard reads mapping to multiple locations?
bowtie2 mapping written 4.9 years ago by mccoykg40 • updated 4.9 years ago by Brian Bushnell17k
7
votes
3
answers
8.5k
views
7 follow
3
answers
Forum: How to calculate FPKM values of interested gene
bowtie2 fpkm cufflinks forum rna-seq written 6.2 years ago by Ginsea Chen130 • updated 6.2 years ago by Charles Warden7.8k
8
votes
1
answer
8.4k
views
1
answer
Where to find PCR duplicate reads in bam file?
dnaseq bam bwa bowtie2 written 4.3 years ago by bioinforesearchquestions280 • updated 4.3 years ago by Pierre Lindenbaum130k
1
vote
1
answer
8.4k
views
1
answer
bowtie2- running command problem
bowtie2 alignment reference written 5.8 years ago by vasilislenis130 • updated 5.8 years ago by RamRS30k
7
votes
2
answers
8.1k
views
2
answers
The Easiest/Fastest Way To Get From Bam To Tpm Or Rpkm
rpkm tophat2 rna-seq bam bowtie2 written 6.9 years ago by Nick270 • updated 6.5 years ago by dfernan690
19
votes
1
answer
7.9k
views
8 follow
1
answer
Tophat2 Mapping Qualities
bowtie2 tophat2 written 6.6 years ago by geek_y11k • updated 6.6 years ago by Devon Ryan96k
6
votes
2
answers
7.8k
views
6 follow
2
answers
Issue with installing bowtie2
bowtie2 error installing written 3.6 years ago by seta1.4k • updated 2.9 years ago by Karma290
1
vote
3
answers
7.6k
views
3
answers
bowtie2-align died with signal 11 (SEGV) (core dumped)
bowtie2 written 3.9 years ago by cvu170 • updated 18 months ago by sushuaikun10
9
votes
2
answers
7.2k
views
8 follow
2
answers
5
votes
4
answers
6.8k
views
4
answers
Understanding bowtie2 output
bowtie2 written 5.9 years ago by jyu429120
0
votes
2
answers
6.8k
views
2
answers
Bowtie2 Alignment summary
reads bowtie2 alignment mapping rna-seq written 5.0 years ago by bassanio20 • updated 5.0 years ago by Devon Ryan96k
4
votes
0
answers
6.7k
views
0
answers
Hisat2 versus Bowtie2
bowtie2 exome-sequencing hisat2 written 4.4 years ago by nalpas.nicolas20 • updated 3.2 years ago by Biostar ♦♦ 20
4
votes
1
answer
6.7k
views
1
answer
filtering paired end mapped reads form SAM/BAM file
bowtie2 paired end maping sam bam written 6.1 years ago by Raghav100 • updated 6.1 years ago by Devon Ryan96k
1
vote
1
answer
6.7k
views
5 follow
1
answer
6
votes
4
answers
6.6k
views
5 follow
4
answers
More loose criteria for bowtie2 mapping
bowtie2 mapping assembly written 5.5 years ago by vasilislenis130 • updated 2.7 years ago by predeus1.4k
27
votes
1
answer
6.6k
views
1
answer
10
votes
1
answer
6.5k
views
8 follow
1
answer
BWA MEM vs BOWTIE2 , which is best?
bwamem bowtie2 alignment rna-seq written 2.7 years ago by John210 • updated 2.7 years ago by h.mon31k
3
votes
2
answers
6.4k
views
6 follow
2
answers
Soft Clipping
bowtie2 written 6.6 years ago by Gregor Rot450
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