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How to check size of genome?

bam bp written 12 days ago by arianc • 0 • updated 12 days ago by Alex Reynolds ♦ 31k

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How does SNP position numeration work?

position bp snp written 6.3 years ago by eyb • 190 • updated 6.3 years ago by Pierre Lindenbaum ♦ 133k

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Recent Replies

C: Post GWAS mapping SNPs to genes and calculating p-values by Emily_Ensembl ♦ 21k
You may want to try the [VEP](http://www.ensembl.org/info/docs/tools/vep/index.html) with the [Po...
C: DESeq2 compare all levels by ATpoint ♦ 44k
See https://www.biostars.org/p/448959/#484944 `apeglm` needs coefs, explanation in my answer and...
A: Problems with ArrayExpress datasets downloads on Bioconductor by louis.kreitmann • 0
Hi! I am trying to use the same data sets... Has any one find a solution around this problem ? Th...
C: How to create interval list from reference fasta or dict file? by MatthewP • 850
Ok, I already created this dict file, but don't know this can serve as interval list, thanks.
A: How to create interval list from reference fasta or dict file? by devarora • 310
Use picard tool java -jar picard.jar CreateSequenceDictionary \ R=reference.fasta...
A: How to specify samples for GATK FastaAlternateReferenceMaker in the option --use by Buxus • 0
An alternative is to maybe use [bcftools][1] consensus. [1]: http://samtools.github.io/bcfto...
C: Find sequences in a fast files present in another fasta file by rpolicastro ♦ 3.2k
Do the sequences match exactly? Also, is there any match in the names?
C: Salmon BAM target length different to FASTA file sequence length by Rob ♦ 4.6k
Hi [bdy8](https://www.biostars.org/u/52462/), Thanks for your detailed follow up! I am not su...
C: Error in converting the probsets by A • 3.9k
Sorry You are right This is the right one `GSE2457` I put CELL files from GSE2457 in rawdata d...
A: Historical Genbank genome assemblies missing? by GenoMax ♦ 95k
Archived human genome assemblies can be found at this [**NCBI FTP**][1] link. [1]: ftp://ftp....
C: Error in converting the probsets by Kevin Blighe ♦ 69k
No, GSE43700 is definitely human data, not rat. Please check the GEO record: https://www.ncbi.nlm...
A: Single cell RNA-seq anlaysis by jared.andrews07 ♦ 8.4k
To add to [rpolicastro](https://www.biostars.org/u/72027/)'s excellent answer, Bioconductor has t...

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