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<prev • 8 results • page 1 of 1 • next >
2
votes
1
answer
331
views
1
answer
error using bqsr and incompatible contigs
gatk bqsr written 6 months ago by cmccabe • 180 • updated 4 weeks ago by Biostar ♦♦ 20
19
votes
1
answer
836
views
5 follow
1
answer
Tool: elPrep 4.0.0, a high-performance drop-in replacement tool for GATK4/Picard/SAMtools for processing SAM/BAM files
bam sam sort markduplicates bqsr tool written 3 months ago by Charlotte.Herzeel • 130
0
votes
0
answers
194
views
0
answers
Adam Transform BQSR result is different with Gatk
gatk bqsr adam written 5 months ago by zhangnew • 0
3
votes
1
answer
295
views
1
answer
multithread support for gatk
gatk bqsr written 6 months ago by cmccabe • 180
1
vote
0
answers
500
views
0
answers
GATK4 BaseRecalibrator and Target region (whole exome data)
gatk4 bqsr written 8 months ago by oghzzang • 30
21
votes
2
answers
1.8k
views
8 follow
2
answers
BQSR: when it is applicable?
gatk bqsr base quality written 15 months ago by lamteva.vera • 140 • updated 15 months ago by finswimmer ♦ 9.9k
2
votes
1
answer
880
views
1
answer
Is it necessery to perform GATK-BQSR before performing variant calling using freebayes.
gatk bqsr freebayes written 23 months ago by sktbanerjee1 • 30 • updated 23 months ago by finswimmer ♦ 9.9k
0
votes
0
answers
1.1k
views
0
answers
BamUtil for Base Qual Recalibration
gatk bqsr basequal recalibration recal written 4.2 years ago by Danielk • 560
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