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written 3 months ago by
sktbanerjee1 • 20
• updated
3 months ago by
finswimmer77 • 190
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Recent Replies
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C: Run Samtools on multiple files by
WouterDeCoster ♦ 19k
Thanks! I am huge fan of parallel, but so many options :o
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C: Extension of reads by
madhu.9124 • 0
the functional requirement to test the application.
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C: Functional annotation of SNPs and genes containing nonsynonymous SNPs by
reza • 130
your suggested way worked for extraction one effect but when i try it for several effect (below c...
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C: Run Samtools on multiple files by
ole.tange • 2.7k
--eta implies --progress, so --progress is not needed. Also try the newer --bar. If you want one ...
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C: Google Cloud - VCF Creation Support from .bam by
chiachun.chiu • 0
Use Genomics Pipeline API or other workflow languages (CWL or WDL/Cromwell) supported by Genomics...
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C: Extension of reads by
Brian Bushnell ♦ 12k
What requirement are you talking about?
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C: Extension of reads by
madhu.9124 • 0
I am testing BBmap application and the requirement says high quality score.
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C: Run Samtools on multiple files by
Charles Plessy • 2.0k
Indeed, a `for` loop better answers to your question. Nevertheless, if you run `parallel` and li...
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C: STAR mapped more reads to transcriptome by
tianleivv • 0
Hi Chris, Thanks for your reply! I am actually following the ENCODE STAR+RSEM pipeline (https://g...
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C: Google Cloud - VCF Creation Support from .bam by
genomax ♦ 29k
Take a look at this [online documentation for ideas][1]. [Google genomics cookbook][2] documentat...
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A: Data mining for 300 genes from GEO by
theobroma22 • 700
I think you could a local Blastx program on the 300 amino acid sequences, and parse the gene IDs ...
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C: STAR mapped more reads to transcriptome by
Chris Fields • 1.7k
It's hard to say w/o knowing specifically how you ran STAR. Maybe a difference in the total # of...
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