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written 9 months ago by
lamteva.vera • 120
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9 months ago by
finswimmer ♦ 4.4k
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written 17 months ago by
sktbanerjee1 • 30
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17 months ago by
finswimmer ♦ 4.4k
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Recent Replies
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C: Adding data to R S4 object by
genomax ♦ 54k
Hello Za/F! It appears that your post has been cross-posted to another site: https://bioinformat...
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C: extracting gene names for RNA-seq reads by
florian.bernard5 • 0
I am more concerned by case when one gene is entirely overlapping with another on the opposite st...
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C: Extract a list of SNPs from a BCF file by
Ram ♦ 17k
>but I haven't had success What does that mean? What is the exact problem you're facing? Can ...
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C: covert SAM to full length fasta by
Damian Kao ♦ 15k
We don't know what exactly you are looking for. I can think of: 1) You want to get a fasta of al...
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C: extracting gene names for RNA-seq reads by
florian.bernard5 • 0
In a perfect world I would only be using direct-RNA sequencing and the problem would be gone : fo...
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A: extracting gene names for RNA-seq reads by
Friederike • 2.0k
As ATpoint notes, there is no perfect solution because the ambiguity cannot be solved (at least n...
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C: covert SAM to full length fasta by
Ram ♦ 17k
Can you explain to us why you want a FASTA out of a BAM? BAM documents how reads (sequences with ...
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C: extracting gene names for RNA-seq reads by
WouterDeCoster ♦ 31k
Can you clarify if you are using sequencing cDNA or RNA? With nanopore this terminology starts to...
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C: extracting gene names for RNA-seq reads by
florian.bernard5 • 0
To know which gene my reads correspond to. It is long reads but coming from RNAs, so there should...
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C: covert SAM to full length fasta by
WouterDeCoster ♦ 31k
What you are asking for is not a simple conversion. Your sam file (using bam files would be bette...
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C: covert SAM to full length fasta by
genomax ♦ 54k
You need to first call variants using the alignment file and then do the consesus. Relevant instr...
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C: Error when indexing a bcf file by
Kevin Blighe ♦ 25k
What about just: bcftools view -e "FORMAT/DP > 1514" -Ob myfile.bcf > my_filtered_file...
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