bqsr Posts

Latest

Open

RNA-Seq

ChIP-Seq

SNP

Assembly

Tutorials

Tools

Jobs

Forum

Planet

All »

Home

Welcome to Biostar! about • faq • rss

Community

Log In

Sign Up

Add New Post

Showing: bqsr • reset

or Classic search

votes

answers

120

views

answers

Adam Transform BQSR result is different with Gatk

gatk bqsr adam written 7 weeks ago by zhangnew • 0

votes

answer

168

views

answer

error using bqsr and incompatible contigs

gatk bqsr written 10 weeks ago by cmccabe • 170 • updated 10 weeks ago by h.mon ♦ 20k

votes

answer

197

views

answer

multithread support for gatk

gatk bqsr written 11 weeks ago by cmccabe • 170

votes

answers

297

views

answers

GATK4 BaseRecalibrator and Target region (whole exome data)

gatk4 bqsr written 4 months ago by oghzzang • 10

votes

answers

1.3k

views

6 follow

answers

BQSR: when it is applicable?

gatk bqsr base quality written 11 months ago by lamteva.vera • 120 • updated 11 months ago by finswimmer ♦ 6.2k

votes

answer

745

views

answer

Is it necessery to perform GATK-BQSR before performing variant calling using freebayes.

gatk bqsr freebayes written 19 months ago by sktbanerjee1 • 30 • updated 19 months ago by finswimmer ♦ 6.2k

votes

answers

1.0k

views

answers

BamUtil for Base Qual Recalibration

gatk bqsr basequal recalibration recal written 3.9 years ago by Danielk • 550

Recent Votes

Recent Locations • All »

Hong Kong, just now
United Kingdom, 5 minutes ago
Germany, 8 minutes ago

Recent Awards • All »

Commentator to h.mon ♦ 20k
Teacher to chrchang523 ♦ 4.0k
Teacher to Pierre Lindenbaum ♦ 113k
Scholar to Pierre Lindenbaum ♦ 113k
Teacher to genomax ♦ 57k
Scholar to michael.ante • 2.7k

Recent Replies

A: So frustrated compiling necessary packages in a linux system by amjadcsu • 40
Do you have your own linux box where you are root.? If yes I would recommend learning singulari...
C: TypeError: 'str' object is not callable by angelshiza • 10
I did use strip and rstrip but same error was there
C: TypeError: 'str' object is not callable by angelshiza • 10
I did change this variable earlier it was pos but i was getting same error
A: So frustrated compiling necessary packages in a linux system by shenwei356 ♦ 4.1k
you need bioconda: https://bioconda.github.io/
C: Working Principle of Ancestral Sequence Reconstruction (ASR) by johnnytam100 • 40
Thanks for the comment! So do you mean although sometimes the result approximate to picking the m...
A: How To Compute The Significance Of The Overlap Of The Size Of The Intersection O by Vasei • 20
You can use resamplin (sometimes called permutation test) in this case. Assuming your gene list i...
A: Working Principle of Ancestral Sequence Reconstruction (ASR) by Brice Sarver • 2.5k
You're working with an alignment here, i.e., an inference of homology. As a result, there will be...
C: How to remove batch effects when i have different organs? by jyshiningsoul • 0
Thank you for your reply. In my experimental design, I want to test whether the phylogenetic tree...
A: Cuffmerge and cuffdiff error by Philipp Bayer ♦ 5.7k
What's in your assemblies.txt? I have a hunch that your original RNASeq alignments never finished...
A: is there a faster way to download large sequencing data from NCBI? by Philipp Bayer ♦ 5.7k
I've made very good experiences with ascp instead of regular FTP The NCBI book will tell you whe...
C: how to find the target sequence for protein modeling? by karthic • 90
There are so many sequences (proteins), which do not have a structure (experimental/predicted). ...
C: Where to find a valid GTF file for stringtie asssembly? by Vijay Lakhujani ♦ 3.1k
> The .gff file you downloaded doesn't describe gene annotations. Yes , exactly! > You do...

Content

Help

About
FAQ

Access

RSS
Stats
API

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Traffic: 725 users visited in the last hour