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Teacher to Kevin Blighe ♦ 52k
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Popular Question to igor ♦ 8.9k
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Recent Replies

C: Representation of common SNPs in text files by cpad0112 ♦ 12k
did you use standard tools such as bcftools (isec/merge), rtgtool (vcfeval), vcftools in interse...
A: Alternatives to RepeatModeler / nseg install fail by Juke-34 • 3.1k
I have added `nseg` in bioconda, you can install it using bioconda now.
C: The Biostar Handbook. A bioinformatics e-book for beginners. by Istvan Albert ♦♦ 81k
Yes, as https://www.biostars.org/u/18713/ points out, it is included with the Biostar Handbook. ...
C: Convert huge list of accession numbers to GI numbers by hazirliver • 0
https://www.nature.com/articles/s41596-019-0211-1 They use both accession numbers and gi numbers....
C: Qiime2 Demux Error by zach • 0
Regarding my 2nd question, is there a way I could add the sequence of the index (from forward seq...
C: Could not locate bowtie index (miRDeep2 analysis) by genomax ♦ 75k
Did you make the bowtie v.1 indexes yourself or downloaded them from somewhere? Are they known to...
C: Could not locate bowtie index (miRDeep2 analysis) by misslaurenheadley • 0
Hey, Thank you for the suggestions. Still hasn't worked. Frustratingly, I have copies that have...
C: Convert huge list of accession numbers to GI numbers by genomax ♦ 75k
Which pipeline are you referring to? Perhaps it could be modified to use accession numbers?
C: Qiime2 Demux Error by genomax ♦ 75k
You need to actually run Qiime2 analysis to get the `.qza` files. As for your second question i...
C: Convert huge list of accession numbers to GI numbers by hazirliver • 0
I know it, but i can try to apply Koonin's pipepline from 2019 article in which they use gi numbe...
C: Qiime2 Demux Error by zach • 0
Thanks for all the answers, genomax. From the link you provided, I am trying to demux with deML a...
C: Convert huge list of accession numbers to GI numbers by genomax ♦ 75k
Please do not use `gi` numbers they have been deprecated for end-user use by NCBI for almost 2 ye...

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