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Recent Replies
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C: IDAT to VCF conversion by
genomax ♦ 80k
Not sure if [**freeseek**][1] will work without cluster file. But worth a try. [1]: https://g...
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A: IDAT to VCF conversion by
Lemire • 560
Chapter 6 of GenomeStudio Genotyping module guide deals with cluster generation. https://support...
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C: ImportError: cannot import name zip_longest by
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Istavan, what you say about the use of `sudo` makes sense; indeed the [instructions for testing s...
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C: Turning pairwise alignment description in XML/JSON to a multiline string by
genomax ♦ 80k
You can use `blast_formatter` program included in `blast+` package, if you save the output in `-o...
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C: How to split a string and swap the result in bash by
JC ♦ 9.7k
`echo "75*>75Q" | perl -pe 's/(\d+)(.)>(\d+)(.)/$1$4>$3$2/'` The "**.**" means anything...
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C: Improperly paired sequences by
genomax ♦ 80k
Using `bwa mem` with two files like that is not what the developer probably had in mind for a dat...
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C: ImportError: cannot import name zip_longest by
moldach • 130
It is always wise to start with the demo data rather than jumping straight ahead to your own data...
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C: BWA-MEM read groups usage by
genomax ♦ 80k
Sequence providers generally pass names of samples along as submitted. Is it possible that same s...
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C: BWA-MEM read groups usage by
lieven.sterck ♦ 7.3k
that we can't say for you I'm afraid ... the only one that can answer that is your sequence provi...
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A: How to split a string and swap the result in bash by
wm • 360
How about try this command? $ cat in.txt 123520 T C missense Rv0104...
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mg • 70
If using [bcftools](http://samtools.github.io/bcftools/bcftools.html), here is equivalent command...
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C: Improperly paired sequences by
life99945 • 20
Thank you for the answer! If this is the case, then the problem of incorrectly paired sequences...
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