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docker image building error

building docker written 10 weeks ago by leukippus0116 • 0

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Cannot build cufflinks 2.2.1 from source (possible problem with samtools 1.3.1)

cufflinks samtools building rna-seq written 4.8 years ago by jp • 110 • updated 4.0 years ago by Biostar ♦♦ 20

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Recent Replies

A: GATK issue in running Mutect2 by 2nelly • 240
> "A USER ERROR has occurred: Input files reference and reads have incompatible contigs: No ov...
C: Getting mitochondrial genes for scRNAseq by ATpoint ♦ 46k
That would still qualify the cell (=the droplet) as poor quality, so where is the difference in u...
C: Plink1.07 generate ERRORs when reading covaries by heqianchange • 0
Thank you very much. I revised the format of the covariable file and the error has gone.
C: Discussion on effects of Gain-of-Function mutations by German.M.Demidov • 1.9k
Hi GenoMax, this is the answer to my question actually =) thank you very much!
C: Understanding TCGA's ASCAT copy number data by loughrae • 50
Go raibh míle maith agat Kevin! Firstly, thanks for the explanation re: max/min copy number, th...
C: Discussion on effects of Gain-of-Function mutations by GenoMax ♦ 96k
This answer from a recent thread will be useful : https://www.biostars.org/p/480799/#480916 @Men...
A: Getting mitochondrial genes for scRNAseq by charlesgwellem • 0
For droplet based approaches, I would not use the percentage of mitochondrial genes in isolation ...
C: Less and less genes predicted with each iteration of SNAP/MAKER by robert.murphy • 30
Apologies for necroing this thread. What are your thought on using the `BRAKER2` pipeline to tra...
A: FASTQC: overrepresented sequences by GenoMax ♦ 96k
PolyG = No signal for 2-color chemistry Illumina sequencers. That sequence is not real. If you ch...
C: Creating Correlation Plot using distance method from a data.frame by jansha.1997 • 0
Thanks a lot for the code. If I might ask , does this corr function use the Pearson method in the...
C: FASTQC: overrepresented sequences by ATpoint ♦ 46k
0.12298334311639213% => just ignore it, it is barely an issue.
A: Getting ENTREZ GENE IDs for data frame, any help? by bastien.ducreux • 0
Hi, I would better use mapIds mapIds(org.Hs.eg.db, rownames(mydata8), 'ENTREZID', 'SYMBOL')

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