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Burden Test for whole exome sequencing data running into errors

sequencing plinkseq burdentest written 15 months ago by shraimrawan • 0 • updated 15 months ago by _r_am ♦ 32k

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Recent Replies

C: HT-Seq count data by Rob • 20
Thanks ATpoin This worked great
C: problems annotating genes using org.Hs.eg.db by rpolicastro ♦ 3.1k
There are a few common packages with the `select` function, so try to explicitly state the correc...
C: Segmentation fault (core dumped) error with bigWigAverageOverBed by camelest • 10
Thank you for your help. So it seems that there is something wrong in Chr column with my BED fil...
C: GC model file by bjwiley23 • 10
For the SNP6 array, does anyone know where to find the snpfile? Thought it might be in the gw6 f...
C: RNA Seq V2 RSEM Data by Kevin Blighe ♦ 69k
Mutation data for all samples for a particular cohort (LUSC, BRCA, *et cetera*) is availalble in ...
C: Segmentation fault (core dumped) error with bigWigAverageOverBed by Alex Reynolds ♦ 31k
That looks like a pretty unusual bed file, where the chromosomes do not look formatted correctly,...
A: scale free topology in WGCNA by mrashad • 50
Honestly, it is the first time for me to use WGCNA and I used this tutorial as a guide: https://h...
A: GSEA from broad institute normalization method by Kevin Blighe ♦ 69k
Hi, As input to the Broad Institute's GSEA program, you should use any type of expression data t...
C: problems annotating genes using org.Hs.eg.db by Kevin Blighe ♦ 69k
What is the output of `str(gene_result)`?
C: Subseq a FASTA file by Explorer • 10
I am not sure about that. When I open it in a text editor, there are blocks of 60nt each while in...
C: Can't download some proteins using Entrez by GenoMax ♦ 94k
Yes. Change the command to this: wget -q -O - "https://eutils.ncbi.nlm.nih.gov/entrez/eutils...
C: Can't download some proteins using Entrez by gabrielpoccia • 0
Can you download the GP this way?

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