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Showing: bwa mem • reset
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<prev • 16 results • page 1 of 1 • next >
13
votes
1
answer
258
views
5 follow
1
answer
Is my file created completely
sam file bwa mem written 6 weeks ago by micro32uvas • 0 • updated 6 weeks ago by h.mon ♦ 6.6k
11
votes
1
answer
169
views
9 follow
1
answer
Oxford Nanopore BWA MEM alignments
long reads bwa mem bwa oxford nanopore written 8 weeks ago by QVINTVS_FABIVS_MAXIMVS • 1.9k • updated 8 weeks ago by WouterDeCoster ♦ 19k
7
votes
3
answers
318
views
5 follow
3
answers
BWA mem output inconsistent on same but re-ordered FASTQ input
assembly alignment bwa mem tool bwa written 4 months ago by ramy • 0
17
votes
3
answers
2.9k
views
5 follow
3
answers
Aligning paired end fastq files dumped from SRA
sra fastq bwa mem paired written 2.6 years ago by Zev.Kronenberg ♦ 10k • updated 4 months ago by Christian • 2.5k
0
votes
0
answers
457
views
0
answers
Mismatch setting for bwa mem ?
bwa mem mismatch written 5 months ago by Picasa • 290
4
votes
1
answer
272
views
1
answer
Weird issue with bam file generated by samtools
samtools bam bwa mem written 5 months ago by Vijay Lakhujani • 950 • updated 5 months ago by Devon Ryan ♦ 68k
1
vote
0
answers
260
views
0
answers
BWA option for FR sens only
bwa mem written 6 months ago by Picasa • 290
2
votes
1
answer
410
views
1
answer
paired reads (headers) show up in 3 lines of sam file instead of expected 2
alignment bwa mem sam written 11 months ago by playerraa • 0 • updated 11 months ago by Damian Kao ♦ 14k
3
votes
2
answers
647
views
2
answers
How to identify the chromosome where the reads has the secondary (alternative alignments), after running bwa mem?
alignment bwa mem sam bam written 12 months ago by kirannbishwa01 • 450 • updated 12 months ago by dariober • 7.8k
4
votes
1
answer
518
views
1
answer
insert size discrepencies using bwa backtrack and bwa mem
bwa-backtrack bwa mem insert written 12 months ago by urmi208 • 30 • updated 12 months ago by lh3 ♦ 30k
2
votes
1
answer
682
views
1
answer
calling BWA mem from within python
python bwa mem written 13 months ago by lien • 30 • updated 13 months ago by Picasa • 290
1
vote
0
answers
731
views
0
answers
parameters in bwa mem
parameters tools bwa mem bwa written 17 months ago by BioinfoNovice • 50
17
votes
3
answers
1.1k
views
3
answers
Lack of consensus between NGS & Sanger sequencing on indels/mutations
indel sanger ngs bwa mem variant calling written 19 months ago by alons • 220
6
votes
0
answers
2.0k
views
0
answers
Tool: Wham - a structural variant caller and association testing framework
gwas tool structural variant bam bwa mem genotype written 2.4 years ago by Zev.Kronenberg ♦ 10k
28
votes
1
answer
17k
views
14 follow
1
answer
When and why is bwa aln better then bwa mem?
comparison bwa mem bwa aln written 2.7 years ago by dariober • 7.8k • updated 2.7 years ago by Istvan Albert ♦♦ 71k
1
vote
0
answers
2.0k
views
0
answers
bwa mem mismatch option
bwa mem written 2.7 years ago by Varun Gupta • 850
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