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Showing: bwa mem • reset
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<prev • 23 results • page 1 of 1 • next >
7
votes
1
answer
671
views
1
answer
bwa mem misaligns my contigs to the reference by a few bases
contig alignment bwa mem bwa bwt written 12 months ago by cristian • 110 • updated 20 days ago by Biostar ♦♦ 20
3
votes
1
answer
185
views
1
answer
QC-passed reads in BWA aln and BWA mem
alignment bwa mem bwa qc-passed bwa aln written 10 weeks ago by kaiho • 10 • updated 10 weeks ago by swbarnes2 ♦ 3.8k
3
votes
1
answer
314
views
1
answer
Does BWA mem work with uBAM file?
ubam bwa mem bwa align written 5 months ago by Abdul Rafay Khan • 860
14
votes
0
answers
336
views
5 follow
0
answers
Penalty model of BWA MEM and BOWTIE2?
bowtie2 alignment bwa mem rna-seq written 6 months ago by sciencer • 60
20
votes
4
answers
4.0k
views
10 follow
4
answers
Aligning paired end fastq files dumped from SRA
sra fastq bwa mem paired written 3.6 years ago by Zev.Kronenberg ♦ 11k • updated 7 months ago by seelament • 0
2
votes
1
answer
362
views
1
answer
Mapping Illumina reads using BWA
assembly bwa mem mapping bwa sequencing written 7 months ago by James • 10 • updated 7 months ago by h.mon ♦ 16k
18
votes
3
answers
1.7k
views
3
answers
Lack of consensus between NGS & Sanger sequencing on indels/mutations
indel sanger ngs bwa mem variant calling written 2.6 years ago by alons • 250 • updated 8 months ago by Kevin Blighe ♦ 23k
2
votes
0
answers
606
views
0
answers
bwa mem segfault
segfault bwa mem bwa written 9 months ago by lindsay.liang • 10
0
votes
0
answers
471
views
0
answers
BWA mem realignment ALT contigs
alignment bwa mem alt contig written 10 months ago by ATpoint • 5.5k
13
votes
1
answer
540
views
5 follow
1
answer
Is my file created completely
sam file bwa mem written 14 months ago by micro32uvas • 0 • updated 14 months ago by h.mon ♦ 16k
11
votes
1
answer
1.1k
views
9 follow
1
answer
Oxford Nanopore BWA MEM alignments
long reads bwa mem bwa oxford nanopore written 14 months ago by QVINTVS_FABIVS_MAXIMVS • 2.1k • updated 14 months ago by WouterDeCoster ♦ 30k
7
votes
3
answers
1.1k
views
3
answers
BWA mem output inconsistent on same but re-ordered FASTQ input
assembly alignment bwa mem tool bwa written 16 months ago by ramy • 0
0
votes
0
answers
1.6k
views
0
answers
Mismatch setting for bwa mem ?
bwa mem mismatch written 17 months ago by Picasa • 350
4
votes
1
answer
663
views
1
answer
Weird issue with bam file generated by samtools
samtools bam bwa mem written 18 months ago by Vijay Lakhujani ♦ 2.7k • updated 18 months ago by Devon Ryan ♦ 81k
1
vote
0
answers
638
views
0
answers
BWA option for FR sens only
bwa mem written 19 months ago by Picasa • 350
2
votes
1
answer
778
views
1
answer
paired reads (headers) show up in 3 lines of sam file instead of expected 2
alignment bwa mem sam written 2.0 years ago by playerraa • 0 • updated 2.0 years ago by Damian Kao ♦ 14k
3
votes
2
answers
1.1k
views
2
answers
How to identify the chromosome where the reads has the secondary (alternative alignments), after running bwa mem?
alignment bwa mem sam bam written 2.1 years ago by kirannbishwa01 • 810 • updated 2.1 years ago by dariober ♦ 9.2k
4
votes
1
answer
968
views
1
answer
insert size discrepencies using bwa backtrack and bwa mem
bwa-backtrack bwa mem insert written 2.1 years ago by urmi208 • 30 • updated 2.1 years ago by lh3 ♦ 31k
3
votes
1
answer
1.4k
views
1
answer
calling BWA mem from within python
python bwa mem written 2.1 years ago by lien • 70 • updated 2.1 years ago by Picasa • 350
2
votes
0
answers
1.2k
views
0
answers
parameters in bwa mem
parameters tools bwa mem bwa written 2.5 years ago by BioinfoNovice • 90
6
votes
0
answers
2.4k
views
0
answers
Tool: Wham - a structural variant caller and association testing framework
gwas tool structural variant bam bwa mem genotype written 3.5 years ago by Zev.Kronenberg ♦ 11k
33
votes
1
answer
23k
views
16 follow
1
answer
When and why is bwa aln better then bwa mem?
comparison bwa mem bwa aln written 3.7 years ago by dariober ♦ 9.2k • updated 3.7 years ago by Istvan Albert ♦♦ 77k
1
vote
0
answers
3.0k
views
0
answers
bwa mem mismatch option
bwa mem written 3.8 years ago by Varun Gupta • 1000
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