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Pierre Lindenbaum ♦ 117k
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written 4.3 years ago by
Adrian Pelin • 2.2k
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3.2 years ago by
Biostar ♦♦ 20
Recent Votes
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Recent Replies
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A: Documentation on RefSeq gff3 columns by
lacek • 0
There are descriptions for some of the unofficial fields in ftp://ftp.ncbi.nlm.nih.gov/genomes/RE...
-
A: Is there a data base, tool or method I can use to find out which of my genes cod by
charlesgwellem • 0
Thank you very múch. I searched the [GO term data base][1] for "cytokine receptor activity" and I...
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C: Convert BAM files to paired end FASTQ by
finswimmer ♦ 10k
Hello, could you please post complete example lines from the bam files, where one can see the re...
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C: OMA error - download from gene ontology not working 404 by
nc52 • 10
Thank you very much for the prompt reply and fix! Seems to be working :D Much appreciated!
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C: Filter Fastq file by seq by
ta_awwad • 200
this is awesome .. thank you so much
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C: Filter Fastq file by seq by
finswimmer ♦ 10k
You could use `repair.sh` from [BBtools][1] to remove the corresponding paired read after removi...
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C: GBS paired reads splits it into several smaller files based on barcode matching by
cpad0112 ♦ 11k
did you try GBSX tool? https://www.biostars.org/u/36776/
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C: Data managment (Hadoop/Spark) and sequencing data by
Devon Ryan ♦ 88k
The thing with using Hadoop/Spark is that few bioinformatics tools support them. So you can use s...
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C: DESeq2 for two file.BAM by
cpad0112 ♦ 11k
as https://www.biostars.org/u/25721/ says results will not be statistically meaningful and unrel...
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C: Paired end peak callers by
Dataminer • 2.6k
Hi Fredrieke, Thank's for the Genrich. I am not after any specific functionality, in general I h...
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C: How to check the presence of mutations of a specific gene in a specific VCF file by
finswimmer ♦ 10k
Yes and yes :) The important thing to understand is, that a `vcf` doesn't know anything about ge...
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finswimmer ♦ 10k
If you start snakemake with the `--cores` parameter e.g. `--cores 4` it runs 4 jobs in parallel. ...
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