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<prev • 23 results • page 1 of 1 • next >
3
votes
1
answer
228
views
1
answer
CWL BWA-MEM RG fields from string parameters - use several input strings to generate a single input string
bwa-mem cwl written 3 months ago by dganiewich • 60 • updated 3 months ago by Tom • 250
3
votes
0
answers
239
views
0
answers
Why my HTseq result is all no_feature.
htseq bwa-mem rna-seq written 3 months ago by guotingfeng • 10 • updated 3 months ago by genomax ♦ 68k
4
votes
1
answer
154
views
1
answer
bwa mem fastq order
bwa-mem fastq alignment bwa written 4 months ago by guffrann • 0 • updated 4 months ago by Pierre Lindenbaum ♦ 120k
3
votes
0
answers
261
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0
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Same pipeline for exome seq variant calling with different results
bwa-mem fastp snp gatk written 7 months ago by paumarc • 10
0
votes
0
answers
612
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0
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parallel bwa mem with compressed fastq.bz2 files
bzip2 bwa-mem linux bwa bash written 7 months ago by Amirosein • 70
3
votes
1
answer
254
views
1
answer
BWA-MEM Syntax Understanding
bwa-mem alignment written 7 months ago by ggman • 80 • updated 7 months ago by Devon Ryan ♦ 90k
1
vote
1
answer
578
views
1
answer
Issues with mapping reads onto Reference genome using bwa mem
bwa-mem alignment invalid bam binary header written 8 months ago by kristina.mahan • 30
4
votes
0
answers
2.8k
views
0
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BWA-mem MAPQ Calculation
mq bwa-mem mapping quality mapq alignment written 2.9 years ago by rfriedman22 • 40 • updated 11 months ago by h.mon ♦ 25k
8
votes
0
answers
944
views
6 follow
0
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Error in BWA-MEM running in linux
bwa-mem alignment rna-seq written 13 months ago by modarzi • 70 • updated 13 months ago by genomax ♦ 68k
7
votes
2
answers
3.5k
views
6 follow
2
answers
bwa mem: Passing a variable to read group
variant calling bwa-mem alignment bwa gatk written 19 months ago by rmf • 650
0
votes
0
answers
584
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0
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How is the 2nd best hit found in bwa-mem
bwa-mem written 17 months ago by IP • 550 • updated 15 months ago by Biostar ♦♦ 20
6
votes
2
answers
1.1k
views
5 follow
2
answers
Mismatch issue in bwa
bwa-aln bwa-mem short reads bwa bwa-samse written 18 months ago by Bastien Hervé ♦ 4.2k • updated 18 months ago by genomax ♦ 68k
3
votes
1
answer
902
views
1
answer
Are there maximum gap penalty scores in BWA-MEM?
bwa-mem alignment written 18 months ago by Diploid Progenitor • 10 • updated 18 months ago by Macspider • 2.8k
1
vote
1
answer
989
views
1
answer
BWA-mem alignment is not giving desired output
bwa-mem alignment wgs written 18 months ago by micro32uvas • 10 • updated 18 months ago by mittu1602 • 150
2
votes
1
answer
1.2k
views
1
answer
fail to open file - bwa mem using CWL
bwa-mem cwl written 2.1 years ago by skanwal • 20 • updated 2.1 years ago by solomon.shorser • 20
6
votes
1
answer
3.4k
views
7 follow
1
answer
memory consumption of bwa-mem
bwa-mem ram mapping memory written 2.3 years ago by Lars • 650 • updated 2.3 years ago by d-cameron • 2.0k
1
vote
2
answers
4.0k
views
6 follow
2
answers
BWA-MEM using long PacBio reads
bwa-mem alignement sam pacbio written 2.4 years ago by Roxane Boyer • 950 • updated 2.4 years ago by Brian Bushnell ♦ 16k
6
votes
1
answer
5.8k
views
1
answer
bwa mem on a bam file
bwa-mem ngs bam written 4.3 years ago by vimartin • 30 • updated 2.9 years ago by Biostar ♦♦ 20
2
votes
1
answer
1.4k
views
1
answer
Does BWA (BWA-MEM) care about the identity and coverage of the mapped reads?
bwa-mem alignment reference mapping bwa written 3.1 years ago by culiu • 20 • updated 3.1 years ago by shaun • 80
4
votes
2
answers
1.8k
views
2
answers
bwa mapping to several similar strains, restrict maximum hits?
bwa-aln bwa-mem sam bwa fasta written 4.6 years ago by Adrian Pelin • 2.3k • updated 3.6 years ago by Biostar ♦♦ 20
1
vote
0
answers
3.8k
views
0
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bwa mem failed to allocate memory
bwa-mem allocate memory bwa written 4.4 years ago by cmo • 50
2
votes
1
answer
1.7k
views
1
answer
How bwa-mem assigns QMAP and proper pair status?
bwa-mem alignment bwa written 4.5 years ago by amirmhzadeh • 70
2
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0
answers
2.8k
views
0
answers
BWA_MEM on PacBio Reads
bwa-mem pacbio written 4.8 years ago by auroramaurizio1 • 20
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