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soft-clipping during alignment and variant calling query
variant calling bwa-mem alignment gatk written 4 months ago by prasundutta87360 • updated 3 months ago by Biostar ♦♦ 20
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Why my HTseq result is all no_feature.
htseq bwa-mem rna-seq written 12 months ago by guotingfeng10 • updated 12 months ago by genomax78k
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bwa mem fastq order
bwa-mem fastq alignment bwa written 13 months ago by guffrann0 • updated 13 months ago by Pierre Lindenbaum126k
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BWA-MEM Syntax Understanding
bwa-mem alignment written 16 months ago by ggman80 • updated 16 months ago by Devon Ryan94k
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BWA-mem MAPQ Calculation
mq bwa-mem mapping quality mapq alignment written 3.6 years ago by rfriedman2240 • updated 19 months ago by h.mon29k
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Error in BWA-MEM running in linux
bwa-mem alignment rna-seq written 21 months ago by modarzi110 • updated 21 months ago by genomax78k
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How is the 2nd best hit found in bwa-mem
bwa-mem written 2.1 years ago by IP690 • updated 24 months ago by Biostar ♦♦ 20
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Mismatch issue in bwa
bwa-aln bwa-mem short reads bwa bwa-samse written 2.2 years ago by Bastien HervĂ©4.5k • updated 2.2 years ago by genomax78k
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Are there maximum gap penalty scores in BWA-MEM?
bwa-mem alignment written 2.2 years ago by Diploid Progenitor10 • updated 2.2 years ago by Macspider3.0k
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BWA-mem alignment is not giving desired output
bwa-mem alignment wgs written 2.2 years ago by micro32uvas10 • updated 2.2 years ago by mittu1602170
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fail to open file - bwa mem using CWL
bwa-mem cwl written 2.8 years ago by skanwal50 • updated 2.8 years ago by solomon.shorser20
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memory consumption of bwa-mem
bwa-mem ram mapping memory written 3.0 years ago by Lars710 • updated 3.0 years ago by d-cameron2.1k
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BWA-MEM using long PacBio reads
bwa-mem alignement sam pacbio written 3.1 years ago by Rox1.1k • updated 3.1 years ago by Brian Bushnell17k
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bwa mem on a bam file
bwa-mem ngs bam written 5.0 years ago by vimartin40 • updated 3.6 years ago by Biostar ♦♦ 20
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bwa mapping to several similar strains, restrict maximum hits?
bwa-aln bwa-mem sam bwa fasta written 5.3 years ago by Adrian Pelin2.3k • updated 4.3 years ago by Biostar ♦♦ 20
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BWA_MEM on PacBio Reads
bwa-mem pacbio written 5.5 years ago by am20
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