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A: mDust location for running MITE-Hunter

Finding Gene Symbols for Probes in Raw Data

Freelancers for bioinformatics web development

edgeR: Correct pipeline for DE analysis with multiple conditions and batches

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Comment: WGCNA adjust p value

Comment: How to compare LD of a gene for all subpopulations in 1000 Genome?

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Popular Question to SmallChess ▴ 550

Recent Replies

Comment: Freelancers for bioinformatics web development by Dunois ★ 1.3k

Make yourselves a website? Nothing flashy; the simpler the better. Do some pro bono work to build up a portfolio + earn some goodwill and n…

Comment: How do I compute ld blocks from the hapmap ld_data? by Rashmi • 0

Thank you for this tutorial! It helps immensely in my work. May I ask what is imputation? My beginner understanding is that we use referen…

Comment: How to compare LD of a gene for all subpopulations in 1000 Genome? by Rashmi • 0

Thank you so much for your insights! I have a clearer picture of what is to be done now. I had read the part 3 of your tutorial earlier but…

Comment: WGCNA adjust p value by jason.taotaotan • 0

I found a [forum](https://stats.stackexchange.com/questions/5750/look-and-you-shall-find-a-correlation/5754#5754) from stack exchange that …

Comment: WGCNA adjust p value by jason.taotaotan • 0

Thanks Adam. It's common to get 5~20 eigengenes from WGCNA, and the metadata may include 5-20 columns (especially for observational clinica…

Answer: How to calculate genotype concordance, comparing two .vcf files with Picard or S by Pierre Lindenbaum 137k

> Can someone please tell me how to resolve this issue? you're comparing two VCFs that were not called with the very same reference. …

Answer: Where can I find GPL571 cdf file? by seyed morteza • 0

1- go to GPL page (in GEO database) 2- search "google" for title in GPL, specially that in [] Example: Title [HG-U133A] A…

Comment: gene expression of specifics gene by ATpoint 52k

This comment above is completely out of context. Please edit the toplevel question and add a **precise** question. Otherwise this question …

Comment: Annotation Affymetrix probesets to Gene symbols by Kevin Blighe 76k

Hi javanokendo, I have posted an answer here as a Tutorial (for you and future users): https://www.biostars.org/p/9483058/

Answer: Python modules/code to generate triangulations of Solvent Excluded Surfaces by Tzunami ▴ 10

Couldn't find a python module yet but I found a bioconda package that gets the job done: [MSMS](https://anaconda.org/bioconda/msms). I…

Comment: Rename "SM" tag in read group only by Lucy ▴ 80

I would also like to know how to do this!

Comment: Understanding subsampling with Samtools by boczniak767 ▴ 790

But does it really choose alignments randomly?

Comment: color coded PCA plot in R for a combined set by raalsuwaidi ▴ 10

thanks. it works

Comment: How To Remove The Same Sequences In The Fasta Files? by Edwin • 0

How will you store the duplicates?

Comment: Sam file arrangement by aenna_p • 0

That was very well simplified! Thanks!

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