Showing: bwareset
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0
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2
answers
1.9k
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2
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Mapping Reads Back To Assembly Contigs To Generate Pileup
pileup bwa coverage written 6.5 years ago by Sen0 • updated 14 hours ago by Biostar ♦♦ 20
0
votes
0
answers
69
views
0
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Choosing the best alignment or aligner
alignment ngm bwa heterozygosity written 1 day ago by adhb0 • updated 1 day ago by Ram17k
4
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0
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2.9k
views
0
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Questions about multithreading of BWA
multithread bwa written 2.6 years ago by michealsmith740 • updated 4 days ago by Ram17k
10
votes
1
answer
3.6k
views
1
answer
Bwa: Number Of Threads
next-gen parallel bwa hardware sequencing written 8.3 years ago by Pierre Lindenbaum112k • updated 10 days ago by Ram17k
9
votes
2
answers
4.9k
views
2
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Bwa Sam Output Doubts
alignment format sam output bwa written 8.3 years ago by Seq_Ga30 • updated 10 days ago by Ram17k
5
votes
1
answer
2.9k
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1
answer
Mapping One Repeat (37Pb) With Bwa/Maq
next-gen mapping bwa sequencing written 8.4 years ago by Pierre Lindenbaum112k • updated 12 days ago by Ram17k
4
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0
answers
3.6k
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0
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Why Is Bwa Soft-Clipping Exactly Matching Reads?
bwa written 4.8 years ago by ktpetrie30 • updated 15 days ago by Ram17k
3
votes
1
answer
130
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1
answer
Extraction of partially mapped reads from BAM
partially mapped reads bam bwa written 15 days ago by nkausthu20 • updated 15 days ago by Pierre Lindenbaum112k
0
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1
answer
120
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5 follow
1
answer
R1 and R2 matching
next-gen bwa written 16 days ago by ieie0 • updated 16 days ago by genomax55k
0
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1
answer
71
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1
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Solved: BWA ALN cannot not find a very obvious match
alignment sam bwa written 20 days ago by max10 • updated 20 days ago by genomax55k
3
votes
1
answer
132
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5 follow
1
answer
BWA gives wrong number of input sequences
bwa written 5 weeks ago by agata88730 • updated 5 weeks ago by swbarnes24.0k
0
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1
answer
157
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5 follow
1
answer
Which indication of a failure can be found in bwa-mem or samtools' output?
samtools bwa written 5 weeks ago by serpalma.v10 • updated 5 weeks ago by ATpoint7.4k
0
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0
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306
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0
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3
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0
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2.8k
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0
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Using BWA Index and i get 5 output files, but BWA-mem asks for just 1
bwa-index bwa written 23 months ago by SaltedPork80 • updated 6 weeks ago by mirzaabid0
4
votes
2
answers
231
views
5 follow
2
answers
bwa index output files
assembly bwa indexing written 7 weeks ago by Inquisitive899520 • updated 7 weeks ago by ATpoint7.4k
2
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0
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266
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0
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6
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1
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199
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1
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6
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1
answer
200
views
1
answer
2
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0
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174
views
0
answers
0
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1
answer
198
views
1
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Read group information
gatk picard read group bwa written 10 weeks ago by bwczech0 • updated 10 weeks ago by WouterDeCoster32k
3
votes
2
answers
201
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2
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How can I map reads only of a certain length?
atac-seq bwa sequencing written 11 weeks ago by a.rex150 • updated 11 weeks ago by Pierre Lindenbaum112k
1
vote
1
answer
155
views
1
answer
Viewing the sai file generated using bwa
mapping bwa written 11 weeks ago by Louis Kok10 • updated 11 weeks ago by noahaus10
0
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0
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154
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0
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1
vote
1
answer
198
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1
answer
7
votes
1
answer
816
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1
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bwa mem misaligns my contigs to the reference by a few bases
contig alignment bwa mem bwa bwt written 14 months ago by cristian120 • updated 12 weeks ago by Biostar ♦♦ 20
3
votes
1
answer
222
views
1
answer
Can someone explain what the -M option in BWA-MEM does?
alignment bwa written 12 weeks ago by James Reeve30 • updated 12 weeks ago by Devon Ryan84k
11
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3
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314
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7 follow
3
answers
Does BWA mem ever discard or modify data
bwa written 3 months ago by e.benn60
5
votes
1
answer
196
views
1
answer
How to extract aligned exactly 1 time in Single end read?
bowtie2 alignment bwa written 3 months ago by star60 • updated 3 months ago by zx87544.9k
4
votes
0
answers
145
views
0
answers
no exact read?
R alignment chip-seq bwa bowtie2 written 3 months ago by star60
8
votes
3
answers
172
views
6 follow
3
answers
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