Latest
Open
RNA-Seq
ChIP-Seq
SNP
Assembly
Tutorials
Tools
Jobs
Forum
Planet
All »
Home
Log In
Showing selected topics • reset
or   Classic search
<prev • 684 results • page 1 of 23 • next >
0
votes
1
answer
60
views
1
answer
How to find mapped regions in the reference genome
genome alignment longreads bwa sequencing written 3 days ago by Ashi • 0
1
vote
1
answer
82
views
1
answer
Separating unmapped reads from bam files is not working using samtools -f 4
genome samtools bwa written 17 days ago by sorrymouse • 90 • updated 17 days ago by genomax ♦ 85k
2
votes
1
answer
1.4k
views
5 follow
1
answer
Error : Could not build fai index
samtools bwa written 11 months ago by manubiomed20 • 10 • updated 20 days ago by elbakri.fatimazahrae • 0
0
votes
1
answer
86
views
1
answer
BWA does contig orientation matter?
reverse-complement bwa orientation written 22 days ago by dp • 40 • updated 22 days ago by swbarnes2 ♦ 7.9k
3
votes
2
answers
4.2k
views
2
answers
How to align DNA reads against a database of protein references
alignment bowtie bwa written 5.0 years ago by bioinfo • 750 • updated 28 days ago by Biostar ♦♦ 20
0
votes
0
answers
81
views
0
answers
Number of secondary alignments per read
bwa-mem alignment samtools bwa written 29 days ago by am3 • 70
0
votes
0
answers
86
views
0
answers
no alignment from plasma derived small RNA
alignment deseq2 bwa mirna written 4 weeks ago by memento1984_1 • 0
8
votes
1
answer
840
views
5 follow
1
answer
Only females but still few reads map to Y chromosome
wgs alignment bwa written 19 months ago by serpalma.v • 40 • updated 5 weeks ago by Biostar ♦♦ 20
2
votes
2
answers
134
views
5 follow
2
answers
can I map multiple (>2) fastq reads against and assembly using bwa?
assembly next-gen sequence bwa alignment written 6 weeks ago by sa91 • 0 • updated 6 weeks ago by swbarnes2 ♦ 7.9k
3
votes
1
answer
217
views
1
answer
Big differences between two alignment tools outputs: BWA vs NanoPipe
alignment nanopipe bwa nanopore bam written 9 weeks ago by alexandru.bologa.marian • 0
2
votes
0
answers
74
views
0
answers
General Tips On Using Optimal Alignment Flags For Specific Data
bowtie2 alignment bwa bioinformatics written 10 weeks ago by blake.mcmurray • 0
1
vote
1
answer
122
views
1
answer
BWA .alt index file
alt tool bwa index written 11 weeks ago by tejaswikoganti • 60 • updated 11 weeks ago by brunobsouzaa • 180
3
votes
0
answers
130
views
0
answers
Handling bwa double free or corruption related core dump on an HPC
bwa snp written 3 months ago by rizoic • 230
1
vote
1
answer
112
views
1
answer
Reference of Whole exome sequecing analysis
variant calling ngs wes mutation bwa written 3 months ago by Shahzad • 10 • updated 3 months ago by lakhujanivijay ♦ 5.0k
0
votes
1
answer
1.6k
views
1
answer
parallel bwa mem with compressed fastq.bz2 files
bzip2 bwa-mem linux bwa bash written 20 months ago by Amirosein • 70 • updated 3 months ago by hsiaoyi0504 • 60
1
vote
0
answers
118
views
0
answers
Filter out supplementary aligned reads for variant calling or not
freebayes bwa snp written 3 months ago by gb • 1.8k
31
votes
3
answers
36k
views
15 follow
3
answers
Adding Read Groups To Bam Files
gatk bam samtools bwa written 8.0 years ago by Zev.Kronenberg ♦ 11k • updated 3 months ago by sagitaninta • 10
1
vote
1
answer
170
views
1
answer
BWA, fastq reads mapped to multi ref fasta. ALL vs ALL
assembly bwa written 3 months ago by erneheay • 10 • updated 3 months ago by colindaven • 2.3k
0
votes
0
answers
103
views
0
answers
Detect Transgene Insertion Site using SAM format
transgene insertion site sam tools bwa written 4 months ago by kspata • 70
0
votes
1
answer
137
views
1
answer
bamtools filtering syntax - reads containing more than X mismatches and soft-clipped reads
bwa bamtools written 4 months ago by joelepaul • 0 • updated 4 months ago by Pierre Lindenbaum ♦ 129k
0
votes
1
answer
124
views
1
answer
fixing human ref genome random access memory
ngs memory usage bwa linux written 4 months ago by SurdanBurasi • 0 • updated 4 months ago by Devon Ryan ♦ 95k
0
votes
1
answer
185
views
1
answer
WES NGS Quality Control
gatk ngs quality control bwa written 4 months ago by SurdanBurasi • 0 • updated 4 months ago by igor ♦ 11k
0
votes
1
answer
193
views
1
answer
Fixing BAM file generated without .alt index file during BWA
bam bwa written 4 months ago by Hadi M • 30 • updated 4 months ago by Biostar ♦♦ 20
2
votes
0
answers
224
views
0
answers
How to map the first part of a read and ignoring the rest of it?
alignment bwa targeted sequencing sequencing written 5 months ago by sh.kazempour94 • 0 • updated 4 months ago by Biostar ♦♦ 20
7
votes
0
answers
241
views
6 follow
0
answers
How to pass arguments in a bash script to perform read alignment to the reference?
exome data analysis bwa bash written 4 months ago by Karma • 270
3
votes
1
answer
541
views
1
answer
BWA mem bam output name sorted
bam samtools bwa written 4 months ago by User000 • 380 • updated 4 months ago by ATpoint ♦ 36k
7
votes
1
answer
442
views
6 follow
1
answer
bwa mem memory allocation, threads and nodes
bwa written 5 months ago by User000 • 380 • updated 4 months ago by d-cameron • 2.2k
8
votes
1
answer
3.5k
views
1
answer
Corrupted bam file
bam samtools bwa written 5.9 years ago by dariober ♦ 11k • updated 5 months ago by Biostar ♦♦ 20
5
votes
0
answers
336
views
0
answers
BWA MEM using snakemake
snakemake bwa written 5 months ago by User000 • 380
1
vote
1
answer
167
views
1
answer
Pipeline BWA aln+samse
bwa written 5 months ago by Mick • 10 • updated 5 months ago by ATpoint ♦ 36k
<prev • 684 results • page 1 of 23 • next >
Recent Votes
Recent Locations • All »
  • Barcelona, 4 minutes ago
  • United Kingdom, 6 minutes ago
Recent Awards • All »
Recent Replies
Content
Help
Access
Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 642 users visited in the last hour