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<prev • 669 results • page 1 of 23 • next >
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NGS Quality Control
gatk ngs quality control bwa written 19 hours ago by ertan.yilmaz • 0
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1
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67
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1
answer
Fixing BAM file generated without .alt index file during BWA
bam bwa written 13 days ago by Hadi M • 30 • updated 2 days ago by Biostar ♦♦ 20
2
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0
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153
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How to map the first part of a read and ignoring the rest of it?
alignment bwa targeted sequencing sequencing written 6 weeks ago by sh.kazempour94 • 0 • updated 6 days ago by Biostar ♦♦ 20
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125
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6 follow
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How to pass arguments in a bash script to perform read alignment to the reference?
exome data analysis bwa bash written 8 days ago by Karma • 270
3
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1
answer
123
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1
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BWA mem bam output name sorted
bam samtools bwa written 16 days ago by User000 • 280 • updated 16 days ago by ATpoint ♦ 29k
7
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1
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169
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6 follow
1
answer
bwa mem memory allocation, threads and nodes
bwa written 21 days ago by User000 • 280 • updated 19 days ago by d-cameron • 2.1k
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1
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3.4k
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1
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Corrupted bam file
bam samtools bwa written 5.5 years ago by dariober ♦ 11k • updated 22 days ago by Biostar ♦♦ 20
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123
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BWA MEM using snakemake
snakemake bwa written 26 days ago by User000 • 280
1
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1
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78
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1
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Pipeline BWA aln+samse
bwa written 27 days ago by Mick • 10 • updated 27 days ago by ATpoint ♦ 29k
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1.0k
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Fail to map after clip adaptor
clip adaptor bwa written 4.9 years ago by mht.tsai • 0 • updated 29 days ago by Biostar ♦♦ 20
3
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1
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149
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5 follow
1
answer
Running BWA mem in a for loop
wgs alignment bwa written 4 weeks ago by beausoleilmo • 300 • updated 4 weeks ago by Giovanni.madrigal12 • 130
3
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6
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2.1k
views
9 follow
6
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Generating consensus sequence from bam file
genome fasta samtools bwa written 11 months ago by chparada • 0 • updated 5 weeks ago by vsingh • 0
0
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1
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124
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1
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Missing MQ tag from bwa mem alignments
wgs mem alignment bwa written 9 weeks ago by QVINTVS_FABIVS_MAXIMVS • 2.3k • updated 9 weeks ago by benformatics • 1.4k
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3
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2.8k
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3
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Which aligner is best suited for circular human mitochondrial genome?
bowtie2 alignment bwa assembly written 4.2 years ago by nalandaatmi • 70 • updated 11 weeks ago by Jonathanjacobs • 240
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106
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1
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Is there any way to avoid adding the PG tag while creating a SAM output from BWA ?
pg sam bwa written 12 weeks ago by lakhujanivijay ♦ 4.8k • updated 12 weeks ago by Devon Ryan ♦ 94k
2
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0
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102
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0
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BWA Aln Quality of 0 for perfect match read ?
alignment mapq bwa bwa aln written 3 months ago by ADDNOTHIING • 10
10
votes
1
answer
159
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1
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Mapping whole exome sequencing
exome gatk wes bwa written 3 months ago by Assa Yeroslaviz • 1.3k • updated 3 months ago by WouterDeCoster ♦ 43k
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1
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234
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1
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How do I specify single end Read in CIRCquant?
rnaseq circularrna ciriquant bwa written 4 months ago by jaqx008 • 70 • updated 3 months ago by kevinzjy • 0
5
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1
answer
232
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1
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Bowtie2 and BWA-MEM giving very different results in metagenomic data
metagenomics alignment bowtie genomics bwa written 3 months ago by elsoja • 100
4
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1
answer
182
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1
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Why does BWA sometimes omit X0 and X1 tags?
burrows-wheeler aligner alignment dna-seq bwa written 3 months ago by b10hazard • 30 • updated 3 months ago by h.mon ♦ 29k
8
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1
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569
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6 follow
1
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Pipe SamToFastq, BWA mem not working
gatk sam bwa pipe written 7 months ago by abbysue • 10 • updated 3 months ago by Marco Pessoa • 0
3
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2
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231
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2
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BWA index - is it neccesary?
bwa index written 3 months ago by Hansen_869 • 20 • updated 3 months ago by ATpoint ♦ 29k
2
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0
answers
135
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0
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Paired Reads have different names - but names are vastly different
alignment paired-reads bwa written 3 months ago by ahlawrence • 0
10
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2
answers
199
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7 follow
2
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BWA Mem -M flag (mark split hits) effect on structural variation calling
structural-variations delly bwa written 3 months ago by fwuffy • 90 • updated 3 months ago by trausch • 1.4k
1
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1
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163
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1
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running bwa in pair end reads
sorted aligment rna-seq bwa written 3 months ago by luzglongoria • 40 • updated 3 months ago by Devon Ryan ♦ 94k
5
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2
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182
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6 follow
2
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Linking bacterial taxonomy to predicted genes with Prokka
prokka bwa maxbin written 3 months ago by Hansen_869 • 20
0
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1
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205
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1
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Combining gene depth data (bwa alignment) and gene categorization data (EggNOG)
eggnog bwa written 3 months ago by Hansen_869 • 20
0
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0
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149
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0
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Can FASTQ header tags be added to SAM file output from bowtie2 ?
alignment next-gen bwa bowtie sequencing written 3 months ago by manojkumar_bhosale • 70
0
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195
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0
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Interpreting bam-files from Prokka annotation
bam samtools prokka bwa written 4 months ago by Hansen_869 • 20
3
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1
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210
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1
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BWA not reporting all similar alignments
alignment next-gen bwa bam written 4 months ago by Chadi Saad • 70
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