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<prev • 602 results • page 1 of 21 • next >
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adding pair info to fastq files, for BWA
illumina bwa sra written 3 days ago by sullis02 • 0
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0
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82
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How can I check my title of reads added by BWA mem -R?
wes bwa written 5 days ago by Laven9 • 0
0
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0
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84
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0
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count reads mapped to multiple locations only once
multiple mapping alignment samtools bwa written 7 days ago by snishtala03 • 10
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80
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samtools fixmate: Couldn't write to output file: Broken pipe
samtools alignment sed bwa written 9 days ago by Ric • 190
0
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1
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163
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1
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Partial amplicon region missing from mapping data
virus mapping bwa igv written 14 days ago by Vijay Lakhujani ♦ 4.0k • updated 14 days ago by swbarnes2 ♦ 5.2k
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1
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680
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1
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Rsubread versus BWA ( Burrows-Wheeler Alignmener) for whole genome alignment
ngs rsubread bwa written 2.6 years ago by tarek.mohamed • 250 • updated 15 days ago by Gordon Smyth • 750
9
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2
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4.7k
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2
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How to align Trimmomatic unpaired reads with BWA?
trimmomatic unpaired reads bwa written 4.0 years ago by mcff23 • 60 • updated 22 days ago by drake.edwards • 0
4
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1
answer
149
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1
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Convert 2 SE bam to PE bam (alignment BWA mem)
alignment bwa bam written 7 weeks ago by mynameliuxiang • 0 • updated 25 days ago by zx8754 ♦ 7.1k
0
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1
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97
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1
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Addition of Y chromosome to the ref sequence
assembly alignment bwa written 28 days ago by micro32uvas • 10 • updated 28 days ago by Devon Ryan ♦ 89k
2
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1
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131
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1
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How to calculate the mapping rate from BAM files generated from BWA
bwa written 29 days ago by wangdp123 • 140
7
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1
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171
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5 follow
1
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How to align given specific region in genome with manifest file in bwa?
genome alignment bwa manifest written 4 weeks ago by bayramliaziz • 0
3
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3
answers
665
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3
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Parallel for bwa mem - problem with -R argument for ID and SM
parallel alignment bwa written 13 months ago by Korsocius • 110 • updated 4 weeks ago by ATpoint ♦ 15k
1
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0
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108
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0
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BWA - [fread] Input/output error
software error alignment bwa written 5 weeks ago by egeulgen • 710
4
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1
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184
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1
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How do BWA and Bowtie2 decide where to place paired reads and what flags affect this?
read aligners read mapping bowtie rna-seq bwa written 5 weeks ago by crits-christoph • 20 • updated 5 weeks ago by Carambakaracho • 960
1
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0
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137
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Run Delly by chromosome
next-gen structural variant discovery delly bwa written 5 weeks ago by tg25 • 0
0
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1
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140
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1
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How to Align to multiple reference genomes -> Discard multiply mapped reads?
alignment bwa cmd written 5 weeks ago by nattzy94 • 10 • updated 5 weeks ago by h.mon ♦ 24k
1
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0
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155
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0
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Why BWA is working faster with 1 thread? Does default 4 thread option output better BAM file?
alignment bwa bwa / written 6 weeks ago by serganover • 0
2
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1
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212
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1
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Generating consensus sequence from bam file
genome fasta samtools bwa written 6 weeks ago by chparada • 0
3
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3
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2.2k
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7 follow
3
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Relative abundance fro metagenomics samples
metagenomics taxonomy relative abundance bwa written 2.2 years ago by David • 150 • updated 6 weeks ago by lagartija • 60
1
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3
answers
2.3k
views
3
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Where To Get The Annotation File For The Nimblegen Seqcap Ez Exome V1
exome gatk variant bwa written 5.9 years ago by ewre • 220 • updated 6 weeks ago by 477926757 • 0
0
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0
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121
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0
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How to set up a reference file for BWA so that highly variable sites between conserved regions are detected?
samtools bwa written 7 weeks ago by DNAngel • 30
0
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1
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286
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1
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bwa: fail to locate the index files
alignment bwa written 9 weeks ago by raf.marcondes • 0 • updated 9 weeks ago by Benn ♦ 6.6k
1
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0
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173
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0
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Fetching the assembled sequence from BWA aligned reads to reference genome
assembly bwa written 10 weeks ago by sharadlko1 • 0
8
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1
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4.1k
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1
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How To Force 'Bwa Samse' To Output Multiple Hits In .Sam Format?
sam bwa written 6.9 years ago by Leonor Palmeira ♦ 3.7k • updated 10 weeks ago by Biostar ♦♦ 20
0
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0
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145
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0
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mate_not_found ValidateSam (picardtools) error
alignment picard mapping bwa written 11 weeks ago by emi.trucchi • 0 • updated 11 weeks ago by finswimmer ♦ 11k
2
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1
answer
1.4k
views
1
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does bwa mem use base qualities?
bwa written 3.2 years ago by Richard • 550 • updated 11 weeks ago by rp7 • 0
4
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1
answer
137
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1
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bwa mem fastq order
bwa-mem fastq alignment bwa written 11 weeks ago by guffrann • 0 • updated 11 weeks ago by Pierre Lindenbaum ♦ 119k
5
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1
answer
221
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1
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Best approach for parallelizing bwa mem over multiple CPUs
hpc parallel bwa written 11 weeks ago by olikidrod • 0 • updated 11 weeks ago by genomax ♦ 65k
5
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1
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293
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6 follow
1
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Can BWA restart a calculation after a break?
samtools bwa written 12 weeks ago by DNAngel • 30 • updated 12 weeks ago by dariober ♦ 10.0k
4
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3
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3.7k
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8 follow
3
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How To Find The Locations Of A Short Specific Sequence In A Genome With 1 Or 2 Mismatches Allowed?
sequence bwa blast written 5.7 years ago by William • 4.4k • updated 3 months ago by Johan Zicola • 40
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