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5
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0
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126
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0
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repeating bwa alignment
whole-genome sequencing bwa written 5 weeks ago by gabri.mochales • 30 • updated 1 hour ago by Biostar ♦♦ 20
4
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65
views
0
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BWA alignment generating errors
alignment bwa written 3 days ago by MAPK • 1.6k
1
vote
0
answers
60
views
0
answers
Different reference human genome
reference bwa human written 6 days ago by v.shapovalova1 • 10
1
vote
1
answer
80
views
1
answer
Trimmomatic trims most of the reverse strand
trimmomatic fastq trim bwa written 15 days ago by hkarakurt • 100 • updated 15 days ago by genomax ♦ 91k
2
votes
1
answer
87
views
1
answer
Where to check out the alignment results for BWA
alignment bwa written 21 days ago by field654 • 10
0
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0
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102
views
0
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number of heterozygous and homozygous SNPs across lineages
samtools bcftools snp bwa written 26 days ago by romain.derelle • 0
0
votes
1
answer
198
views
1
answer
BWA-MEM - Improperly Paired Reads
genome gatk next-gen alignment bwa written 4 weeks ago by mglasena • 0 • updated 4 weeks ago by genomax ♦ 91k
0
votes
1
answer
144
views
1
answer
How get read group information from fastq files in SRA
sra fastq read group bwa written 5 weeks ago by zamani_2012 • 0 • updated 5 weeks ago by ATpoint ♦ 40k
3
votes
0
answers
951
views
0
answers
bwa mem -R (RGline) format for DNBseq fastq
wgs dnbseq bwa mem fastq bwa written 14 months ago by joe • 140 • updated 6 weeks ago by xxa • 0
0
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0
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313
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7 follow
0
answers
BWA mem and Samtools sort in Bash script
alignment samtools bwa bash written 3 months ago by Vladislav • 10 • updated 6 weeks ago by Biostar ♦♦ 20
1
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0
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147
views
0
answers
How BWA determine a paired-end read is proper or improperly paired?
alignment bwa written 7 weeks ago by godth13teen • 50
0
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0
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98
views
0
answers
Are bwa alt contigs controlled purely by idxbase.alt?
bwa written 8 weeks ago by d-cameron • 2.2k
3
votes
2
answers
194
views
2
answers
bwa index not generating, taking long time
assembly alignment bwa index written 9 weeks ago by ccha97 • 20 • updated 9 weeks ago by Mensur Dlakic • 7.0k
1
vote
1
answer
142
views
1
answer
Error: failed to locate the BWA index.
R bwa written 10 weeks ago by L_LANKA • 0 • updated 10 weeks ago by JC ♦ 12k
3
votes
1
answer
468
views
1
answer
Big differences between two alignment tools outputs: BWA vs NanoPipe
alignment nanopipe bwa nanopore bam written 6 months ago by alexandru.bologa.marian • 0 • updated 11 weeks ago by Biostar ♦♦ 20
4
votes
1
answer
171
views
1
answer
Reads mapped with zero quality still mapped to exactly one position
mq mapping quality mapq bwa written 11 weeks ago by bataloffv • 20 • updated 11 weeks ago by Istvan Albert ♦♦ 85k
4
votes
1
answer
237
views
5 follow
1
answer
Paired-End Reads and Variant Calling
fastq sam bwa written 12 weeks ago by ocortes • 0 • updated 12 weeks ago by h.mon ♦ 31k
2
votes
1
answer
1.1k
views
1
answer
BWA: Importing a third-party indexed genome
1000genomes alignment grch38 bwa written 4.2 years ago by GD • 30 • updated 12 weeks ago by Biostar ♦♦ 20
3
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0
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193
views
0
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How does Base Call casing affect BWA
alignment samtools bwa written 12 weeks ago by oconnwald • 20
0
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0
answers
137
views
0
answers
How to find all positions of one particular contig to which the short reads have been mapped?
mapping bwa shortreads longreads sam written 3 months ago by Ashi • 10
0
votes
0
answers
139
views
0
answers
BWA MEM output directory
directory bwa bash written 3 months ago by sarastrafella.ss • 0 • updated 3 months ago by Kevin Blighe ♦ 66k
10
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0
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17k
views
9 follow
0
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Page: BWA command guide
page bwa written 2.7 years ago by Chen • 1.0k • updated 3 months ago by wljlinksly • 50
0
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0
answers
120
views
0
answers
How to check contiguity of reads mapped in BWA
bioinfromatics contiguity mapping longreads bwa written 3 months ago by Ashi • 10
32
votes
4
answers
18k
views
18 follow
4
answers
Bwa Mem Method For Mapping, With Or Without Trimming Reads?
bwa written 6.8 years ago by J.F.Jiang • 850 • updated 3 months ago by Biostar ♦♦ 20
0
votes
1
answer
116
views
1
answer
Read showing Insertion of 41 bases when aligned with BWA
bowtie2 variant bwa written 3 months ago by kspata • 70 • updated 3 months ago by swbarnes2 ♦ 8.9k
0
votes
0
answers
156
views
0
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Alignment of reads to gene and pseudogene
gene pseudogene alignment mapping quality bwa written 3 months ago by nkausthu • 30
0
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0
answers
154
views
0
answers
BWA mem paired end read name errors
paired end reads bwa mem bwa written 3 months ago by dp • 40
3
votes
1
answer
161
views
1
answer
How to see set of short reads mapped to a particular long read
bioinformatics shortreads mapping longreads bwa written 3 months ago by Ashi • 10 • updated 3 months ago by genomax ♦ 91k
2
votes
2
answers
177
views
2
answers
Does BWA MEM understand paired-end suffixes? /2 in a single FASTQ file?
fastq paired end bwa written 3 months ago by tech • 0 • updated 3 months ago by i.sudbery ♦ 9.4k
0
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184
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0
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Number of secondary alignments per read
bwa-mem alignment samtools bwa written 4 months ago by am3 • 70 • updated 3 months ago by Biostar ♦♦ 20
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