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<prev • 655 results • page 1 of 22 • next >
3
votes
1
answer
58
views
1
answer
Why does BWA sometimes omit X0 and X1 tags?
burrows-wheeler aligner alignment dna-seq bwa written 16 hours ago by b10hazard • 30 • updated 15 hours ago by h.mon ♦ 28k
8
votes
1
answer
364
views
6 follow
1
answer
Pipe SamToFastq, BWA mem not working
gatk sam bwa pipe written 4 months ago by abbysue • 10 • updated 1 day ago by Marco Pessoa • 0
3
votes
2
answers
115
views
2
answers
BWA index - is it neccesary?
bwa index written 12 days ago by Hansen_869 • 10 • updated 5 days ago by ATpoint ♦ 26k
2
votes
0
answers
79
views
0
answers
Paired Reads have different names - but names are vastly different
alignment paired-reads bwa written 7 days ago by ahlawrence • 0
10
votes
2
answers
81
views
7 follow
2
answers
BWA Mem -M flag (mark split hits) effect on structural variation calling
structural-variations delly bwa written 8 days ago by fwuffy • 90 • updated 7 days ago by trausch • 1.4k
1
vote
1
answer
72
views
1
answer
running bwa in pair end reads
sorted aligment rna-seq bwa written 14 days ago by luzglongoria • 20 • updated 14 days ago by Devon Ryan ♦ 92k
5
votes
2
answers
117
views
6 follow
2
answers
Linking bacterial taxonomy to predicted genes with Prokka
prokka bwa maxbin written 15 days ago by Hansen_869 • 10
0
votes
1
answer
125
views
1
answer
Combining gene depth data (bwa alignment) and gene categorization data (EggNOG)
eggnog bwa written 16 days ago by Hansen_869 • 10
0
votes
0
answers
94
views
0
answers
Can FASTQ header tags be added to SAM file output from bowtie2 ?
alignment next-gen bwa bowtie sequencing written 19 days ago by manojkumar_bhosale • 70
0
votes
0
answers
116
views
0
answers
Interpreting bam-files from Prokka annotation
bam samtools prokka bwa written 26 days ago by Hansen_869 • 10
3
votes
1
answer
128
views
1
answer
BWA not reporting all similar alignments
alignment next-gen bwa bam written 27 days ago by Chadi Saad • 60
0
votes
0
answers
125
views
0
answers
How do I specify single end Read in CIRCquant?
rnaseq circularrna ciriquant bwa written 29 days ago by jaqx008 • 60
0
votes
0
answers
101
views
0
answers
Aligning short oligos containing Ns to a genome
alignment blast bwa written 4 weeks ago by dacotahm • 20
3
votes
0
answers
296
views
0
answers
bwa mem -R (RGline) format for DNBseq fastq
wgs dnbseq bwa mem fastq bwa written 12 weeks ago by joe • 120 • updated 4 weeks ago by Biostar ♦♦ 20
2
votes
1
answer
150
views
1
answer
Question: BWA mem skip orientation
genome assembly next-gen bwa alignment written 5 weeks ago by BellaK • 0 • updated 5 weeks ago by ATpoint ♦ 26k
41
votes
0
answers
27k
views
40 follow
0
answers
Tutorial: Mapping Reads With Bwa And Bowtie
tutorial bowtie bwa written 7.6 years ago by MSU course 2011 • 500 • updated 6 weeks ago by ATpoint ♦ 26k
0
votes
1
answer
222
views
1
answer
How to control BWA output?
python alignment stdout bwa assembly written 7 weeks ago by plato29 • 0
1
vote
1
answer
187
views
1
answer
What do you do after obtaining sorted bam files?
bam bwa written 7 weeks ago by DNAngel • 40 • updated 7 weeks ago by swbarnes2 ♦ 7.0k
0
votes
0
answers
136
views
0
answers
How to obtain protein-coding sequences from assembled genome/exome dataset?
paml bwa written 7 weeks ago by DNAngel • 40
6
votes
1
answer
215
views
5 follow
1
answer
How to determine which NCBI sequence to map against (multiple sequences for single taxID)
ncbi sendsketch bwa written 7 weeks ago by LRStar • 190
5
votes
2
answers
139
views
2
answers
BWA aln - failed to locate the index
bioinformatics alignment bwa written 8 weeks ago by m.wekking • 10 • updated 8 weeks ago by Pierre Lindenbaum ♦ 124k
5
votes
1
answer
171
views
1
answer
bwa mem on lowpass wgs
wgs bwa written 8 weeks ago by igor • 0 • updated 8 weeks ago by WouterDeCoster ♦ 42k
0
votes
1
answer
267
views
1
answer
sh: warning: setlocale: LC_ALL: cannot change locale (en_US.utf8)
perl bwa bash written 9 weeks ago by kspata • 60 • updated 9 weeks ago by Joe ♦ 15k
0
votes
0
answers
179
views
0
answers
low alignment rate with bowtie2 of ChIP-seq data 150bp pair end
bowtie2 chip-seq bwa low alignment rate written 11 weeks ago by Shuang He • 0
1
vote
1
answer
191
views
1
answer
How to get an exact match from the bam alignment file
bam samtools bwa written 4 months ago by xiaoguang • 10 • updated 12 weeks ago by yasokannan93 • 20
3
votes
1
answer
170
views
1
answer
Best practice for handling multi mapping quality
gatk snp bwa written 3 months ago by clear.choi • 30 • updated 3 months ago by Brice Sarver • 3.2k
5
votes
1
answer
159
views
1
answer
Stop BWA from storing unmapped reads
alignment bwa written 3 months ago by CC • 30 • updated 3 months ago by ATpoint ♦ 26k
0
votes
1
answer
176
views
1
answer
Mapping of long read to extremely small reference sequence
bowtie2 small reference mapping bwa written 3 months ago by Rajesh Detroja • 60
0
votes
0
answers
179
views
0
answers
BWA alignment error
assembly alignment bwa written 3 months ago by alhafidzhamdan • 0
10
votes
1
answer
204
views
6 follow
1
answer
bwa parallel on a SLURM cluster
bwa written 3 months ago by little_more • 20
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