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<prev • 465 results • page 1 of 16 • next >
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146
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Extracting chimeric reads from mapping
alignment samtools rna-seq bwa written 1 day ago by Anushka • 20 • updated 1 day ago by Pierre Lindenbaum ♦ 98k
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94
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0
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Is it possible to import a count table into MEGAN?
featurecounts rna-seq bwa megan written 6 days ago by victor.gambarini • 20
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111
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Which mapping tool takes read quality score into account
bowtie2 mapping bwa quality score written 9 days ago by Chen • 560 • updated 9 days ago by h.mon ♦ 8.7k
1
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1
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187
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1
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True score of alignment BWA-MEM
alignment bwa written 15 days ago by arunsub • 0
3
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3
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173
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5 follow
3
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How to reduce cross mapping alignments with paired-end reads ?
genome dnaseq bwa written 16 days ago by David • 60
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126
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0
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bwa index error : Floating point exception
software error alignment bwa written 16 days ago by comma1993 • 0
5
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1
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406
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7 follow
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Meaning of BWA-MEM MAPQ values
alignment dna-seq bwa written 24 days ago by Isaac C. Joseph • 30
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1
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265
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1
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What are the sematics of containing bwa split read alignments?
sa split read bwa written 6 months ago by d-cameron • 850 • updated 19 days ago by Biostar ♦♦ 20
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1
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234
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1
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How to speed up bwa mem?
wgs bwa written 21 days ago by bluemonster0808 • 0 • updated 21 days ago by Brian Bushnell ♦ 14k
7
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1
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226
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1
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BWA -> samtools pipe while filtering mapped & unmapped reads
unmapped files samtools bwa mapped files written 25 days ago by fiona.newberry • 60 • updated 25 days ago by h.mon ♦ 8.7k
0
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1
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141
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1
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Calculating coverage of genes which have accounted for multiple best hits from bam/sam files
bedtools alignment next-gen samtools bwa written 25 days ago by cwwong13 • 0 • updated 25 days ago by Michael Dondrup ♦ 43k
5
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1
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244
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1
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Help with adding read groups in BWA bash loop script
next-gen bwa bash-loop written 29 days ago by eric.londin • 10 • updated 29 days ago by WouterDeCoster ♦ 21k
0
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1
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211
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6 follow
1
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Truncated sam file - Parse error
bam sam bwa written 29 days ago by fiona.newberry • 60 • updated 29 days ago by ATPoint • 1.1k
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194
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BWA mem error
assembly rna-seq bwa written 4 weeks ago by gingergeiger22 • 0 • updated 4 weeks ago by genomax ♦ 33k
5
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217
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Bwa producing no alignment
bwa written 3 months ago by ThePresident • 70 • updated 8 weeks ago by Biostar ♦♦ 20
3
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1
answer
228
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1
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BWA aln vs. mem for 100bp reads
bwa written 8 weeks ago by ropolocan • 270 • updated 8 weeks ago by Pierre Lindenbaum ♦ 98k
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0
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162
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0
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Will the ordering of fasta references influence bwa mem alignment result?
alignment bwa written 9 weeks ago by hanschen • 0
3
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1
answer
175
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1
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Is it okay to realign and subsequently process fastq files that were converted from processed BAM files?
fastq alignment recalibration bwa bam written 10 weeks ago by mary.a.wood.91 • 0 • updated 10 weeks ago by Istvan Albert ♦♦ 73k
3
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216
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0
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ERROR USING BWASW (BWA 0.7.15-r1140): bwtsw2_pair.c line 122: failed to allocate memory
alignment dna-seq bwa written 11 weeks ago by azaharamft • 0
4
votes
1
answer
247
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6 follow
1
answer
problem with BWA alignment
rna-seq bwa written 11 weeks ago by blur • 50 • updated 11 weeks ago by shwethacm • 150
2
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1
answer
183
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1
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Recommended program for evaluating aligner sensitivity
bowtie2 stampy soap smalt bwa written 11 weeks ago by fiona.newberry • 60 • updated 11 weeks ago by mark.ziemann • 890
5
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1
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227
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1
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bwa mem misaligns my contigs to the reference by a few bases
contig alignment bwa mem bwa bwt written 11 weeks ago by cristian • 80
4
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205
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0
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Why ExAC used bwa aln instead of mem?
exac bwa written 12 weeks ago by abascalfederico • 970
13
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1
answer
253
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1
answer
Pipe from BWA to sambamba
sambamba linux bwa pipe written 3 months ago by fiona.newberry • 60 • updated 3 months ago by WouterDeCoster ♦ 21k
36
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2
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695
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11 follow
2
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Obtaining uniquely mapped reads from BWA mem alignment (filtering by q score does not seem to do the trick in my case)
next-gen alignment bwa written 3 months ago by betsy.s.collins • 100 • updated 3 months ago by John ♦ 11k
0
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1
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249
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1
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How accurate is BWA MEM mapping?
alignment mapping bwa written 3 months ago by hah0024 • 0 • updated 3 months ago by mforde84 • 900
3
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2
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924
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2
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Keeping Tags That Are Mapped To The Same Place By Two Aligners
alignment bwa bowtie written 4.8 years ago by KCC • 3.8k • updated 3 months ago by Biostar ♦♦ 20
0
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0
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518
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0
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Why is bwa terminating alignment and exiting the script without an error message?
genome alignment bwa sequencing written 14 months ago by mmats010 • 40 • updated 3 months ago by agathejouet • 0
6
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1
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1.3k
views
1
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Human+Viral Genomes In A Single Index (Bwa Or Other Aligners)
genome human bwa bowtie index written 5.9 years ago by Rm ♦ 7.5k • updated 3 months ago by Biostar ♦♦ 20
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244
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0
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BWA option about the insert size
genome alignment pair-end bwa written 4 months ago by xieduo9394 • 0
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