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Fixing BAM file generated without .alt index file during BWA
bam bwa written 13 days ago by Hadi M30 • updated 2 days ago by Biostar ♦♦ 20
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BWA mem bam output name sorted
bam samtools bwa written 16 days ago by User000280 • updated 16 days ago by ATpoint29k
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6 follow
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bwa mem memory allocation, threads and nodes
bwa written 21 days ago by User000280 • updated 19 days ago by d-cameron2.1k
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Corrupted bam file
bam samtools bwa written 5.5 years ago by dariober11k • updated 22 days ago by Biostar ♦♦ 20
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BWA MEM using snakemake
snakemake bwa written 26 days ago by User000280
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Pipeline BWA aln+samse
bwa written 27 days ago by Mick10 • updated 27 days ago by ATpoint29k
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Fail to map after clip adaptor
clip adaptor bwa written 4.9 years ago by mht.tsai0 • updated 29 days ago by Biostar ♦♦ 20
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Running BWA mem in a for loop
wgs alignment bwa written 4 weeks ago by beausoleilmo300 • updated 4 weeks ago by Giovanni.madrigal12130
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Generating consensus sequence from bam file
genome fasta samtools bwa written 11 months ago by chparada0 • updated 5 weeks ago by vsingh0
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Missing MQ tag from bwa mem alignments
wgs mem alignment bwa written 9 weeks ago by QVINTVS_FABIVS_MAXIMVS2.3k • updated 9 weeks ago by benformatics1.4k
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Is there any way to avoid adding the PG tag while creating a SAM output from BWA ?
pg sam bwa written 12 weeks ago by lakhujanivijay4.8k • updated 12 weeks ago by Devon Ryan94k
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102
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Mapping whole exome sequencing
exome gatk wes bwa written 3 months ago by Assa Yeroslaviz1.3k • updated 3 months ago by WouterDeCoster43k
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How do I specify single end Read in CIRCquant?
rnaseq circularrna ciriquant bwa written 4 months ago by jaqx00870 • updated 3 months ago by kevinzjy0
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Why does BWA sometimes omit X0 and X1 tags?
burrows-wheeler aligner alignment dna-seq bwa written 3 months ago by b10hazard30 • updated 3 months ago by h.mon29k
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6 follow
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Pipe SamToFastq, BWA mem not working
gatk sam bwa pipe written 7 months ago by abbysue10 • updated 3 months ago by Marco Pessoa0
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BWA index - is it neccesary?
bwa index written 3 months ago by Hansen_86920 • updated 3 months ago by ATpoint29k
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163
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running bwa in pair end reads
sorted aligment rna-seq bwa written 3 months ago by luzglongoria40 • updated 3 months ago by Devon Ryan94k
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