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Recent Replies
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C: Question : How to read this kind of Stand Alone BLAST Formatted File? by
lieven.sterck ♦ 9.5k
No, it is not. What it returned, as in the result you posted, is the default blast output (== Pa...
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I am also having the same issue ... can someone tell me what's wrong with my cmd? /bowtie2 -x Hu...
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Hi, I don't have a full answer since I just started researching this myself, but I noticed that ...
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C: Annotating two columns at the same time by
cpad0112 ♦ 14k
You haven't read the comments
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C: Question : How to read this kind of Stand Alone BLAST Formatted File? by
BiomedicalTissueIng • 0
Yes I know for output. So it is a SAM output that is returned. I'll try with MATLAB samread and s...
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C: Chipseq condition 1 and condition 2 comparison result Interpretation help by
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Hello, Could you please check and respond . Thank you
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C: Question : How to read this kind of Stand Alone BLAST Formatted File? by
BiomedicalTissueIng • 0
For example, if I take the MATLAB swalign (https://it.mathworks.com/help/bioinfo/ref/swalign.html...
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C: Question : How to read this kind of STAND ALONE BLAST FORMATTED FILE? by
lieven.sterck ♦ 9.5k
Please clearly explain what you want to achieve or what your exact issue is. what you see here i...
-
A: Taxonomic sequence classification for shotgun metagenomics, compatible with down by
obriek11 • 0
Hello, I think my course of action for the same situation is to convert the kraken2 classified ...
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C: Question : How to read this kind of STAND ALONE BLAST FORMATTED FILE? by
Pierre Lindenbaum ♦ 133k
> So how can I analyze this type of file? what does it mean ?
-
A: Annotating two columns at the same time by
Mozart • 240
Thanks for the comments. I have a list of ids interacting somehow with another list of ids. I wan...
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A: Setting a threshold based on effective number of independent Snps in GWAS. by
Nicolas Rosewick ♦ 9.3k
You could prune your dataset with plink : https://www.cog-genomics.org/plink/1.9/ld and then coun...
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