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<prev • 568 results • page 1 of 19 • next >
1
vote
1
answer
99
views
1
answer
bwa is getting stuck
mem alignment bwa rna-seq written 5 days ago by joomi • 0
6
votes
1
answer
128
views
1
answer
bwa mem -R or samtools view -T
bwa written 6 days ago by flystar233 • 0
7
votes
1
answer
153
views
1
answer
Only females but still few reads map to Y chromosome
wgs alignment bwa written 8 days ago by serpalma.v • 20 • updated 8 days ago by Pierre Lindenbaum ♦ 114k
2
votes
2
answers
5.1k
views
2
answers
Bwa Mismatches And Seed Length
bwa written 6.0 years ago by GPR • 310 • updated 12 days ago by Biostar ♦♦ 20
1
vote
1
answer
85
views
1
answer
BWASW and _alt alleles
alignment bwa blat written 14 days ago by Maximilian Haeussler • 1.3k
3
votes
0
answers
122
views
0
answers
Facing problem in BWA reference genome mapping
genome mapping bwa written 18 days ago by abdul.suboor123 • 0
0
votes
0
answers
152
views
0
answers
parallel bwa mem with compressed fastq.bz2 files
bzip2 bwa-mem linux bwa bash written 22 days ago by Amirosein • 70
3
votes
0
answers
182
views
5 follow
0
answers
Merging BWT indices for BWA
merge bwt read aligner bwa written 26 days ago by rgc255 • 10
4
votes
1
answer
140
views
1
answer
How to generate a BAM/SAM file to show a mutation using BWA aligner
alignment snp bwa written 4 weeks ago by neranjan • 0 • updated 4 weeks ago by h.mon ♦ 21k
1
vote
1
answer
124
views
1
answer
Is BWA consider insert size when define read mapped in proper pair
alignment bwa sequencing written 5 weeks ago by Medhat ♦ 8.0k • updated 5 weeks ago by Pierre Lindenbaum ♦ 114k
0
votes
1
answer
174
views
1
answer
Alignment to contings with Illumina pe with bwa or minimap2?
minimap2 pilon alignment bwa canu written 5 weeks ago by likoo27 • 0 • updated 5 weeks ago by h.mon ♦ 21k
0
votes
0
answers
136
views
0
answers
BWA inexact matching
alignment bwa written 6 weeks ago by chirag.agrawal.91 • 0 • updated 6 weeks ago by genomax ♦ 58k
1
vote
1
answer
130
views
1
answer
BWA alignment query
alignment bwa written 6 weeks ago by chirag.agrawal.91 • 0 • updated 6 weeks ago by swbarnes2 ♦ 4.5k
0
votes
1
answer
116
views
1
answer
BWA: Read flagged as unmapped, but mate says mate is mapped.
bwa written 6 weeks ago by i.sudbery • 2.7k • updated 6 weeks ago by t.kuilman • 700
4
votes
1
answer
133
views
1
answer
there are not enough pairs message on screen when running BWA MEM
alignment tool bwa written 7 weeks ago by S AR • 50
4
votes
1
answer
149
views
1
answer
Position of aligned read in SAM file.
sam bwa written 7 weeks ago by relinquisheddragon • 0
0
votes
0
answers
130
views
0
answers
Extract mitochondrial DNA from paired-end RAD-seq data: bwa and stacks
rad-seq stacks bwa written 8 weeks ago by CaffeSospeso • 0
5
votes
1
answer
251
views
1
answer
bwa-mem: [bam_sort_core] merging from 0 files and 3 in-memory blocks
bwa written 8 weeks ago by CaffeSospeso • 0 • updated 8 weeks ago by WouterDeCoster ♦ 34k
0
votes
0
answers
341
views
0
answers
bwa output : [bwa_aln_core] calculate SA coordinate... Killed
software error genome sequence bwa written 8 months ago by deepak.sharma • 0 • updated 8 weeks ago by Biostar ♦♦ 20
0
votes
2
answers
2.0k
views
2
answers
Mapping Reads Back To Assembly Contigs To Generate Pileup
pileup bwa coverage written 6.6 years ago by Sen • 0 • updated 8 weeks ago by Biostar ♦♦ 20
0
votes
0
answers
131
views
0
answers
Choosing the best alignment or aligner
alignment ngm bwa heterozygosity written 9 weeks ago by adhb • 0 • updated 9 weeks ago by RamRS ♦ 19k
4
votes
0
answers
3.2k
views
0
answers
Questions about multithreading of BWA
multithread bwa written 2.7 years ago by michealsmith • 740 • updated 9 weeks ago by RamRS ♦ 19k
10
votes
1
answer
3.7k
views
1
answer
Bwa: Number Of Threads
next-gen parallel bwa hardware sequencing written 8.5 years ago by Pierre Lindenbaum ♦ 114k • updated 10 weeks ago by RamRS ♦ 19k
9
votes
2
answers
5.0k
views
2
answers
Bwa Sam Output Doubts
alignment format sam output bwa written 8.5 years ago by Seq_Ga • 30 • updated 10 weeks ago by RamRS ♦ 19k
5
votes
1
answer
2.9k
views
1
answer
Mapping One Repeat (37Pb) With Bwa/Maq
next-gen mapping bwa sequencing written 8.6 years ago by Pierre Lindenbaum ♦ 114k • updated 10 weeks ago by RamRS ♦ 19k
4
votes
0
answers
3.7k
views
0
answers
Why Is Bwa Soft-Clipping Exactly Matching Reads?
bwa written 5.0 years ago by ktpetrie • 30 • updated 11 weeks ago by RamRS ♦ 19k
3
votes
1
answer
254
views
5 follow
1
answer
Extraction of partially mapped reads from BAM
partially mapped reads bam bwa written 11 weeks ago by nkausthu • 20 • updated 11 weeks ago by Pierre Lindenbaum ♦ 114k
0
votes
1
answer
207
views
5 follow
1
answer
R1 and R2 matching
next-gen bwa written 11 weeks ago by ieie • 0 • updated 11 weeks ago by genomax ♦ 58k
0
votes
1
answer
125
views
1
answer
Solved: BWA ALN cannot not find a very obvious match
alignment sam bwa written 11 weeks ago by max • 10 • updated 11 weeks ago by genomax ♦ 58k
3
votes
1
answer
198
views
5 follow
1
answer
BWA gives wrong number of input sequences
bwa written 3 months ago by agata88 • 760 • updated 3 months ago by swbarnes2 ♦ 4.5k
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