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<prev • 452 results • page 1 of 16 • next >
5
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181
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Bwa producing no alignment
bwa written 10 weeks ago by ThePresident • 50 • updated 23 days ago by Biostar ♦♦ 20
3
votes
1
answer
165
views
1
answer
BWA aln vs. mem for 100bp reads
bwa written 24 days ago by ropolocan • 270 • updated 24 days ago by Pierre Lindenbaum ♦ 96k
0
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0
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129
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0
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Will the ordering of fasta references influence bwa mem alignment result?
alignment bwa written 4 weeks ago by hanschen • 0
3
votes
1
answer
149
views
1
answer
Is it okay to realign and subsequently process fastq files that were converted from processed BAM files?
fastq alignment recalibration bwa bam written 5 weeks ago by mary.a.wood.91 • 0 • updated 5 weeks ago by Istvan Albert ♦♦ 73k
3
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0
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195
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ERROR USING BWASW (BWA 0.7.15-r1140): bwtsw2_pair.c line 122: failed to allocate memory
alignment dna-seq bwa written 6 weeks ago by azaharamft • 0
4
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1
answer
205
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6 follow
1
answer
problem with BWA alignment
rna-seq bwa written 6 weeks ago by blur • 50 • updated 6 weeks ago by shwethacm • 150
2
votes
1
answer
158
views
1
answer
Recommended program for evaluating aligner sensitivity
bowtie2 stampy soap smalt bwa written 6 weeks ago by fiona.newberry • 50 • updated 6 weeks ago by mark.ziemann • 870
5
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1
answer
189
views
1
answer
bwa mem misaligns my contigs to the reference by a few bases
contig alignment bwa mem bwa bwt written 7 weeks ago by cristian • 70
4
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0
answers
172
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0
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Why ExAC used bwa aln instead of mem?
exac bwa written 7 weeks ago by abascalfederico • 960
13
votes
1
answer
204
views
1
answer
Pipe from BWA to sambamba
sambamba linux bwa pipe written 8 weeks ago by fiona.newberry • 50 • updated 8 weeks ago by WouterDeCoster ♦ 20k
36
votes
2
answers
582
views
11 follow
2
answers
Obtaining uniquely mapped reads from BWA mem alignment (filtering by q score does not seem to do the trick in my case)
next-gen alignment bwa written 10 weeks ago by betsy.s.collins • 100 • updated 10 weeks ago by John ♦ 11k
0
votes
1
answer
192
views
1
answer
How accurate is BWA MEM mapping?
alignment mapping bwa written 10 weeks ago by hah0024 • 0 • updated 10 weeks ago by mforde84 • 780
3
votes
2
answers
899
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2
answers
Keeping Tags That Are Mapped To The Same Place By Two Aligners
alignment bwa bowtie written 4.7 years ago by KCC • 3.8k • updated 11 weeks ago by Biostar ♦♦ 20
0
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0
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483
views
0
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Why is bwa terminating alignment and exiting the script without an error message?
genome alignment bwa sequencing written 13 months ago by mmats010 • 40 • updated 11 weeks ago by agathejouet • 0
6
votes
1
answer
1.3k
views
1
answer
Human+Viral Genomes In A Single Index (Bwa Or Other Aligners)
genome human bwa bowtie index written 5.8 years ago by Rm ♦ 7.5k • updated 11 weeks ago by Biostar ♦♦ 20
0
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0
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198
views
0
answers
BWA option about the insert size
genome alignment pair-end bwa written 3 months ago by xieduo9394 • 0
0
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0
answers
293
views
0
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Number of Threads for BWA MEM
bwa written 3 months ago by haiying.kong • 170
5
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0
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178
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0
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BWA MEM Supplementary Tag Position (0 or 1 based)
supplementary tag bwa written 3 months ago by QVINTVS_FABIVS_MAXIMVS • 1.9k
0
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0
answers
171
views
0
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How good are bwa-mem and stampy when dealing with low quality reads?
mapping bwa written 3 months ago by joreamayarom • 80
1
vote
0
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191
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0
answers
which alignment tool is better to use to align genome on short reference sequence ~5000b.p
bowtie2 alignment bwa use written 3 months ago by bbb • 30
12
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2
answers
6.3k
views
5 follow
2
answers
shell script for bowtie/bwa alignment pair end reads
illumina fastq shell bwa bowtie written 2.6 years ago by Paul • 630 • updated 3 months ago by emad.albarouki • 0
0
votes
1
answer
274
views
1
answer
SAM to BAM conversion error
genome alignment samtools bwa bam written 3 months ago by jitendoshi2006 • 0 • updated 3 months ago by Pierre Lindenbaum ♦ 96k
11
votes
1
answer
324
views
9 follow
1
answer
Oxford Nanopore BWA MEM alignments
long reads bwa mem bwa oxford nanopore written 3 months ago by QVINTVS_FABIVS_MAXIMVS • 1.9k • updated 3 months ago by WouterDeCoster ♦ 20k
0
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0
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198
views
0
answers
buffer error bwa
bwa written 4 months ago by agata88 • 610
2
votes
1
answer
287
views
1
answer
samstat and samtools differ in the number of MAPQ=0 reads/alignments.
samstat samtools bwa written 4 months ago by user230613 • 240
6
votes
1
answer
1.3k
views
1
answer
Recent comparison of BWA-mem versus Berkeley SNAP aligner, TP, TN and speed.
snap bwa written 23 months ago by William • 3.9k • updated 4 months ago by h.mon ♦ 8.0k
3
votes
2
answers
2.4k
views
2
answers
How To Find The Locations Of A Short Specific Sequence In A Genome With 1 Or 2 Mismatches Allowed?
sequence bwa blast written 4.0 years ago by William • 3.9k • updated 4 months ago by Biostar ♦♦ 20
2
votes
1
answer
224
views
1
answer
Cannot repair BWA paired reads that have different name
alignment bwa written 4 months ago by Alex • 0
4
votes
1
answer
226
views
1
answer
how to store index files generated by bwa in different folder than the reference sequence ?
forum bwa reference sequence index written 5 months ago by retrogenomics • 10 • updated 5 months ago by Pierre Lindenbaum ♦ 96k
0
votes
1
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227
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1
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What are the sematics of containing bwa split read alignments?
sa split read bwa written 5 months ago by d-cameron • 770
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