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<prev • 593 results • page 1 of 20 • next >
3
votes
3
answers
612
views
3
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Parallel for bwa mem - problem with -R argument for ID and SM
parallel alignment bwa written 12 months ago by Korsocius • 100 • updated 1 day ago by ATpoint ♦ 14k
1
vote
0
answers
59
views
0
answers
BWA - [fread] Input/output error
software error alignment bwa written 4 days ago by egeulgen • 670
4
votes
1
answer
127
views
1
answer
How do BWA and Bowtie2 decide where to place paired reads and what flags affect this?
read aligners read mapping bowtie rna-seq bwa written 5 days ago by crits-christoph • 20 • updated 5 days ago by Carambakaracho • 920
1
vote
0
answers
87
views
0
answers
Run Delly by chromosome
next-gen structural variant discovery delly bwa written 7 days ago by tg25 • 0
0
votes
1
answer
101
views
1
answer
How to Align to multiple reference genomes -> Discard multiply mapped reads?
alignment bwa cmd written 6 days ago by nattzy94 • 10 • updated 6 days ago by h.mon ♦ 23k
1
vote
0
answers
107
views
0
answers
Why BWA is working faster with 1 thread? Does default 4 thread option output better BAM file?
alignment bwa bwa / written 10 days ago by serganover • 0
2
votes
1
answer
135
views
1
answer
Generating consensus sequence from bam file
genome fasta samtools bwa written 12 days ago by chparada • 0
3
votes
3
answers
2.1k
views
7 follow
3
answers
Relative abundance fro metagenomics samples
metagenomics taxonomy relative abundance bwa written 2.2 years ago by David • 150 • updated 14 days ago by lagartija • 50
1
vote
3
answers
2.3k
views
3
answers
Where To Get The Annotation File For The Nimblegen Seqcap Ez Exome V1
exome gatk variant bwa written 5.8 years ago by ewre • 220 • updated 14 days ago by 477926757 • 0
0
votes
0
answers
86
views
0
answers
How to set up a reference file for BWA so that highly variable sites between conserved regions are detected?
samtools bwa written 17 days ago by DNAngel • 20
0
votes
1
answer
152
views
1
answer
bwa: fail to locate the index files
alignment bwa written 4 weeks ago by raf.marcondes • 0 • updated 4 weeks ago by b.nota ♦ 6.2k
1
vote
0
answers
130
views
0
answers
Fetching the assembled sequence from BWA aligned reads to reference genome
assembly bwa written 5 weeks ago by sharadlko1 • 0
8
votes
1
answer
4.1k
views
1
answer
How To Force 'Bwa Samse' To Output Multiple Hits In .Sam Format?
sam bwa written 6.8 years ago by Leonor Palmeira ♦ 3.7k • updated 6 weeks ago by Biostar ♦♦ 20
0
votes
0
answers
113
views
0
answers
mate_not_found ValidateSam (picardtools) error
alignment picard mapping bwa written 6 weeks ago by emi.trucchi • 0 • updated 6 weeks ago by finswimmer ♦ 11k
2
votes
1
answer
1.4k
views
1
answer
does bwa mem use base qualities?
bwa written 3.2 years ago by Richard • 550 • updated 6 weeks ago by rp7 • 0
4
votes
1
answer
117
views
1
answer
bwa mem fastq order
bwa-mem fastq alignment bwa written 6 weeks ago by guffrann • 0 • updated 6 weeks ago by Pierre Lindenbaum ♦ 117k
5
votes
1
answer
177
views
1
answer
Best approach for parallelizing bwa mem over multiple CPUs
hpc parallel bwa written 7 weeks ago by olikidrod • 0 • updated 7 weeks ago by genomax ♦ 63k
5
votes
1
answer
260
views
6 follow
1
answer
Can BWA restart a calculation after a break?
samtools bwa written 7 weeks ago by DNAngel • 20 • updated 7 weeks ago by dariober ♦ 9.9k
4
votes
3
answers
3.6k
views
8 follow
3
answers
How To Find The Locations Of A Short Specific Sequence In A Genome With 1 Or 2 Mismatches Allowed?
sequence bwa blast written 5.6 years ago by William • 4.4k • updated 8 weeks ago by Johan Zicola • 40
1
vote
1
answer
228
views
6 follow
1
answer
for loop over bwa aln
alignment next-gen bwa written 8 weeks ago by phylofun • 10 • updated 8 weeks ago by jrj.healey ♦ 11k
2
votes
0
answers
2.3k
views
0
answers
Mapping Quality Issues With Bwa/Stampy Hybrid Alignment
alignment bwa written 6.0 years ago by oadaily • 20 • updated 9 weeks ago by zhangtaonju • 0
3
votes
1
answer
169
views
1
answer
different bam from same NGS data
bam bwa written 9 weeks ago by gab • 20 • updated 9 weeks ago by jsporter • 60
3
votes
2
answers
1.8k
views
2
answers
Does The Mapping Of A Read'S Pair Affect Its Own Mapping Score In Bwa?
paired-end mapping bwa written 5.2 years ago by jhrf • 10 • updated 9 weeks ago by Biostar ♦♦ 20
4
votes
0
answers
416
views
5 follow
0
answers
Confused about how to generate a consensus sequence after bwa
samtools bwa mpileup written 3 months ago by DNAngel • 20
0
votes
0
answers
190
views
0
answers
Bcftools homozygous calls have less read counts than heterozygotes
vcf population genomics bcftools filtering bwa written 10 weeks ago by oselm • 30
3
votes
0
answers
740
views
0
answers
Error using bwasw (bwa 0.7.15-r1140): bwtsw2_pair.c line 122: failed to allocate memory
alignment dna-seq bwa written 20 months ago by azaharamft • 0 • updated 3 months ago by finswimmer ♦ 11k
0
votes
1
answer
215
views
5 follow
1
answer
Extracting the full read ID when converting from BAM -> FASTQ
fastq bam samtools bwa written 3 months ago by ttmigueltt • 0 • updated 3 months ago by toralmanvar • 750
4
votes
1
answer
203
views
1
answer
FastQ Screen "no BWA index was found"
fastq screen bwa written 3 months ago by KaiserinLissi • 0
7
votes
2
answers
421
views
6 follow
2
answers
How to retain SEQ and QUAL fields in BAM file after filtering?
bam samtools bwa written 3 months ago by toddknutson • 50 • updated 3 months ago by Pierre Lindenbaum ♦ 117k
6
votes
1
answer
371
views
1
answer
How to remove singletons in a BAM file using samtools
singletons alignment samtools bwa written 3 months ago by neranjan • 0 • updated 3 months ago by finswimmer ♦ 11k
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