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<prev • 551 results • page 1 of 19 • next >
0
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2
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1.9k
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Mapping Reads Back To Assembly Contigs To Generate Pileup
pileup bwa coverage written 6.5 years ago by Sen • 0 • updated 14 hours ago by Biostar ♦♦ 20
0
votes
0
answers
69
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0
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Choosing the best alignment or aligner
alignment ngm bwa heterozygosity written 1 day ago by adhb • 0 • updated 1 day ago by Ram ♦ 17k
4
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0
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2.9k
views
0
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Questions about multithreading of BWA
multithread bwa written 2.6 years ago by michealsmith • 740 • updated 4 days ago by Ram ♦ 17k
10
votes
1
answer
3.6k
views
1
answer
Bwa: Number Of Threads
next-gen parallel bwa hardware sequencing written 8.3 years ago by Pierre Lindenbaum ♦ 112k • updated 10 days ago by Ram ♦ 17k
9
votes
2
answers
4.9k
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2
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Bwa Sam Output Doubts
alignment format sam output bwa written 8.3 years ago by Seq_Ga • 30 • updated 10 days ago by Ram ♦ 17k
5
votes
1
answer
2.9k
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1
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Mapping One Repeat (37Pb) With Bwa/Maq
next-gen mapping bwa sequencing written 8.4 years ago by Pierre Lindenbaum ♦ 112k • updated 12 days ago by Ram ♦ 17k
4
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0
answers
3.6k
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0
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Why Is Bwa Soft-Clipping Exactly Matching Reads?
bwa written 4.8 years ago by ktpetrie • 30 • updated 15 days ago by Ram ♦ 17k
3
votes
1
answer
130
views
1
answer
Extraction of partially mapped reads from BAM
partially mapped reads bam bwa written 15 days ago by nkausthu • 20 • updated 15 days ago by Pierre Lindenbaum ♦ 112k
0
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1
answer
120
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5 follow
1
answer
R1 and R2 matching
next-gen bwa written 16 days ago by ieie • 0 • updated 16 days ago by genomax ♦ 55k
0
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1
answer
71
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1
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Solved: BWA ALN cannot not find a very obvious match
alignment sam bwa written 20 days ago by max • 10 • updated 20 days ago by genomax ♦ 55k
3
votes
1
answer
132
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5 follow
1
answer
BWA gives wrong number of input sequences
bwa written 5 weeks ago by agata88 • 730 • updated 5 weeks ago by swbarnes2 ♦ 4.0k
0
votes
1
answer
157
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5 follow
1
answer
Which indication of a failure can be found in bwa-mem or samtools' output?
samtools bwa written 5 weeks ago by serpalma.v • 10 • updated 5 weeks ago by ATpoint ♦ 7.4k
0
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0
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306
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0
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Alignment with BWA and SAMtools
samtools sam-file bwa written 5 weeks ago by Shelle • 0
3
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0
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2.8k
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0
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Using BWA Index and i get 5 output files, but BWA-mem asks for just 1
bwa-index bwa written 23 months ago by SaltedPork • 80 • updated 6 weeks ago by mirzaabid • 0
4
votes
2
answers
231
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5 follow
2
answers
bwa index output files
assembly bwa indexing written 7 weeks ago by Inquisitive8995 • 20 • updated 7 weeks ago by ATpoint ♦ 7.4k
2
votes
0
answers
266
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0
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Linux: Error in make bwa
alignment error bwa linux written 8 weeks ago by t.kranenburg • 30
6
votes
1
answer
199
views
1
answer
bwa-mem, from .sam/.bam to fasta file
samtools bwa written 9 weeks ago by ieie • 0
6
votes
1
answer
200
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1
answer
BWA mem of a heavily masked reference index takes more time than the normal reference?
alignment bwa written 9 weeks ago by Duarte Molha • 200 • updated 9 weeks ago by karl.stamm ♦ 3.3k
2
votes
0
answers
174
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0
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Align reads on multi-fasta (contigs) file?
bwa written 10 weeks ago by ThePresident • 100
0
votes
1
answer
198
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1
answer
Read group information
gatk picard read group bwa written 10 weeks ago by bwczech • 0 • updated 10 weeks ago by WouterDeCoster ♦ 32k
3
votes
2
answers
201
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2
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How can I map reads only of a certain length?
atac-seq bwa sequencing written 11 weeks ago by a.rex • 150 • updated 11 weeks ago by Pierre Lindenbaum ♦ 112k
1
vote
1
answer
155
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1
answer
Viewing the sai file generated using bwa
mapping bwa written 11 weeks ago by Louis Kok • 10 • updated 11 weeks ago by noahaus • 10
0
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0
answers
154
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0
answers
BWA. Allocate memory
next-gen alignment memory bwa sequencing written 11 weeks ago by windsur • 0
1
vote
1
answer
198
views
1
answer
Duplicate SAMSequenceDictionary in SAM file - how to modify SAM header?
sam file bwa sequencedictionary written 12 weeks ago by kwalter • 10 • updated 12 weeks ago by finswimmer ♦ 5.3k
7
votes
1
answer
816
views
1
answer
bwa mem misaligns my contigs to the reference by a few bases
contig alignment bwa mem bwa bwt written 14 months ago by cristian • 120 • updated 12 weeks ago by Biostar ♦♦ 20
3
votes
1
answer
222
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1
answer
Can someone explain what the -M option in BWA-MEM does?
alignment bwa written 12 weeks ago by James Reeve • 30 • updated 12 weeks ago by Devon Ryan ♦ 84k
11
votes
3
answers
314
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7 follow
3
answers
Does BWA mem ever discard or modify data
bwa written 3 months ago by e.benn • 60
5
votes
1
answer
196
views
1
answer
How to extract aligned exactly 1 time in Single end read?
bowtie2 alignment bwa written 3 months ago by star • 60 • updated 3 months ago by zx8754 ♦ 4.9k
4
votes
0
answers
145
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0
answers
no exact read?
R alignment chip-seq bwa bowtie2 written 3 months ago by star • 60
8
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3
answers
172
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6 follow
3
answers
BWA (mem, sampe, or aln) used in bam file
bam bwa sequencing written 3 months ago by rborges • 50
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