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<prev • 580 results • page 1 of 20 • next >
4
votes
3
answers
3.4k
views
8 follow
3
answers
How To Find The Locations Of A Short Specific Sequence In A Genome With 1 Or 2 Mismatches Allowed?
sequence bwa blast written 5.4 years ago by William • 4.4k • updated 5 days ago by Johan Zicola • 40
1
vote
1
answer
162
views
6 follow
1
answer
for loop over bwa aln
alignment next-gen bwa written 7 days ago by phylofun • 10 • updated 7 days ago by jrj.healey ♦ 10.0k
2
votes
0
answers
2.2k
views
0
answers
Mapping Quality Issues With Bwa/Stampy Hybrid Alignment
alignment bwa written 5.9 years ago by oadaily • 20 • updated 9 days ago by zhangtaonju • 0
3
votes
1
answer
113
views
1
answer
different bam from same NGS data
bam bwa written 11 days ago by gab • 20 • updated 11 days ago by jsporter • 60
3
votes
2
answers
1.7k
views
2
answers
Does The Mapping Of A Read'S Pair Affect Its Own Mapping Score In Bwa?
paired-end mapping bwa written 5.0 years ago by jhrf • 10 • updated 12 days ago by Biostar ♦♦ 20
4
votes
0
answers
276
views
5 follow
0
answers
Confused about how to generate a consensus sequence after bwa
samtools bwa mpileup written 6 weeks ago by DNAngel • 20
0
votes
0
answers
107
views
0
answers
Bcftools homozygous calls have less read counts than heterozygotes
vcf population genomics bcftools filtering bwa written 18 days ago by oselm • 30
3
votes
0
answers
688
views
0
answers
Error using bwasw (bwa 0.7.15-r1140): bwtsw2_pair.c line 122: failed to allocate memory
alignment dna-seq bwa written 18 months ago by azaharamft • 0 • updated 5 weeks ago by finswimmer ♦ 9.0k
0
votes
1
answer
171
views
5 follow
1
answer
Extracting the full read ID when converting from BAM -> FASTQ
fastq bam samtools bwa written 6 weeks ago by ttmigueltt • 0 • updated 6 weeks ago by toralmanvar • 730
4
votes
1
answer
136
views
1
answer
FastQ Screen "no BWA index was found"
fastq screen bwa written 6 weeks ago by KaiserinLissi • 0
7
votes
2
answers
335
views
6 follow
2
answers
How to retain SEQ and QUAL fields in BAM file after filtering?
bam samtools bwa written 6 weeks ago by toddknutson • 50 • updated 6 weeks ago by Pierre Lindenbaum ♦ 116k
6
votes
1
answer
238
views
1
answer
How to remove singletons in a BAM file using samtools
singletons alignment samtools bwa written 6 weeks ago by neranjan • 0 • updated 6 weeks ago by finswimmer ♦ 9.0k
3
votes
1
answer
182
views
1
answer
Issues with Marking Duplicates in Picard
gatk picard samtools sorting bwa written 6 weeks ago by sarah.kettelkamp • 0 • updated 6 weeks ago by goodez • 420
2
votes
2
answers
145
views
2
answers
Link for pre-indexed BWA indices for human reference
genome reference bwa human index written 7 weeks ago by Vijay Lakhujani ♦ 3.5k
6
votes
1
answer
172
views
1
answer
Inclusion of ALT contigs and decoys in bwa alignment
ngs alignment hg38 bwa bwa.kit written 7 weeks ago by Mehulsharma.253 • 10
1
vote
1
answer
149
views
1
answer
BWA.KIT where can i find it? Very confused
alt_mapping bwa bwakit written 7 weeks ago by Duarte Molha • 200 • updated 7 weeks ago by finswimmer ♦ 9.0k
1
vote
1
answer
176
views
1
answer
bwa is getting stuck
mem alignment bwa rna-seq written 9 weeks ago by joomi • 0
6
votes
1
answer
183
views
1
answer
bwa mem -R or samtools view -T
bwa written 9 weeks ago by flystar233 • 0
7
votes
1
answer
216
views
1
answer
Only females but still few reads map to Y chromosome
wgs alignment bwa written 9 weeks ago by serpalma.v • 20 • updated 9 weeks ago by Pierre Lindenbaum ♦ 116k
2
votes
2
answers
5.2k
views
2
answers
Bwa Mismatches And Seed Length
bwa written 6.2 years ago by GPR • 310 • updated 10 weeks ago by Biostar ♦♦ 20
1
vote
1
answer
156
views
1
answer
BWASW and _alt alleles
alignment bwa blat written 10 weeks ago by Maximilian Haeussler • 1.3k
3
votes
0
answers
167
views
0
answers
Facing problem in BWA reference genome mapping
genome mapping bwa written 11 weeks ago by abdul.suboor123 • 0
0
votes
0
answers
259
views
0
answers
parallel bwa mem with compressed fastq.bz2 files
bzip2 bwa-mem linux bwa bash written 12 weeks ago by Amirosein • 70
3
votes
0
answers
239
views
5 follow
0
answers
Merging BWT indices for BWA
merge bwt read aligner bwa written 12 weeks ago by rgc255 • 10
4
votes
1
answer
201
views
1
answer
How to generate a BAM/SAM file to show a mutation using BWA aligner
alignment snp bwa written 3 months ago by neranjan • 0 • updated 3 months ago by h.mon ♦ 22k
1
vote
1
answer
177
views
1
answer
Is BWA consider insert size when define read mapped in proper pair
alignment bwa sequencing written 3 months ago by Medhat ♦ 8.1k • updated 3 months ago by Pierre Lindenbaum ♦ 116k
0
votes
1
answer
306
views
1
answer
Alignment to contings with Illumina pe with bwa or minimap2?
minimap2 pilon alignment bwa canu written 3 months ago by likoo27 • 0 • updated 3 months ago by h.mon ♦ 22k
0
votes
0
answers
181
views
0
answers
BWA inexact matching
alignment bwa written 3 months ago by chirag.agrawal.91 • 0 • updated 3 months ago by genomax ♦ 60k
1
vote
1
answer
187
views
1
answer
BWA alignment query
alignment bwa written 3 months ago by chirag.agrawal.91 • 0 • updated 3 months ago by swbarnes2 ♦ 4.7k
0
votes
1
answer
171
views
1
answer
BWA: Read flagged as unmapped, but mate says mate is mapped.
bwa written 3 months ago by i.sudbery ♦ 3.2k • updated 3 months ago by t.kuilman • 720
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