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<prev • 47 results • page 1 of 2 • next >
5
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1
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331
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1
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Methods for Doing Consensus Variant Calling between multiple callers
consensus wes calling variant dna written 6 months ago by djevanclark • 40
0
votes
1
answer
1.4k
views
1
answer
GATK Panel Of Normals (PoN)
gatk beta calling variant written 16 months ago by Barry Digby • 310 • updated 10 months ago by esraesmeray1990 • 10
5
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2
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5.3k
views
2
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Problems When Calling Snps Using Samtools Mpileup
calling samtools snp written 7.2 years ago by 玄 • 20 • updated 10 months ago by Biostar ♦♦ 20
3
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1
answer
2.2k
views
1
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Nanopore SNP and indels calling tool
snps indels tools calling nanopore written 19 months ago by tarek.mohamed • 260 • updated 15 months ago by WouterDeCoster ♦ 43k
0
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0
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429
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0
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SNP/Mbp rate weird, any known bias/artifact?
mbp calling variant snp bias written 22 months ago by Macspider • 3.0k
2
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1
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1.0k
views
1
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How to detect False positive variant in repeat region ?
vcf calling bam written 2.0 years ago by istdasklar • 0 • updated 2.0 years ago by Kevin Blighe ♦ 55k
3
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3
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7.2k
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5 follow
3
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How To Get Consensus Sequence Including Variant From A Vcf File For Several Individuals...?
vcf consensus calling variant gatk written 7.4 years ago by Bioch'Ti • 1.0k • updated 2.0 years ago by boczniak767 • 680
0
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1
answer
1.3k
views
1
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mpileup for PacBio reads
quiver calling pacbio mpileup variants written 2.9 years ago by Biomonika (Noolean) ♦ 3.1k • updated 2.2 years ago by tjduncan • 250
3
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0
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1.7k
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7 follow
0
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Detecting Structural variants in sequencing data
structural variants calling svs sequencing written 2.7 years ago by Glen • 20 • updated 2.3 years ago by Biostar ♦♦ 20
1
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1
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848
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1
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VCF Indel line structure: what is actually reported?
indel vcf calling variant snp written 2.9 years ago by Macspider • 3.0k • updated 2.7 years ago by Biostar ♦♦ 20
0
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0
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769
views
0
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Getting SNPs that are the complementary base of the reference
calling allele variant snp alternative written 3.0 years ago by Macspider • 3.0k
5
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1
answer
885
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1
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VCF Format INFO field: why do some keys in it not appear in the documentation?
vcf format calling snp variants written 3.2 years ago by Macspider • 3.0k • updated 3.2 years ago by Pierre Lindenbaum ♦ 126k
5
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1
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940
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1
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Variant Calling problem - find alternate heterozygous
vcf calling heterozygous variant written 3.3 years ago by Paul • 1.4k • updated 3.3 years ago by Zaag • 770
4
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0
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1.7k
views
0
answers
INDEL and point mutation at same position in VCF
vcf indels calling snps alignment written 4.7 years ago by simono101 • 20 • updated 3.5 years ago by Biostar ♦♦ 20
2
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1
answer
1.6k
views
1
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filtering pindel results
indel calling rearrangement filtering pindel written 3.7 years ago by Tootiki • 40
27
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6
answers
2.7k
views
6
answers
Does anyone use Python for variant calling?
python ngs calling variant snp written 3.7 years ago by mhmtgenc85 • 40 • updated 3.7 years ago by Zaag • 770
9
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5
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3.7k
views
5
answers
SNP calling pipeline - testing different programs
snp calling mapping filtering written 4.8 years ago by Eric Normandeau ♦ 10k • updated 3.9 years ago by alexisdereeper • 30
5
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1
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4.6k
views
1
answer
Snp Calling With Bcftools Using Pileup File Format Instead Of Bcf
calling bcftools snp written 6.6 years ago by Justin • 440 • updated 5.1 years ago by Biostar ♦♦ 20
4
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1
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5.5k
views
7 follow
1
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Filtering Variant Calls Based On Genotype Quality
calling variant filtering written 7.4 years ago by Kssr • 110 • updated 5.2 years ago by Biostar ♦♦ 20
7
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2
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5.9k
views
8 follow
2
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Haplotype Calling
haplotype calling 454 sequencing written 7.5 years ago by Empyrean • 160 • updated 5.3 years ago by Biostar ♦♦ 20
1
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2
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2.6k
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2
answers
How Can I Get The Field Of Ac Key-Value Pair In The Info Column In Vcf File?
vcf calling frequency allele variant written 6.0 years ago by cli2 • 0
11
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1
answer
6.6k
views
10 follow
1
answer
Tetraploid Snp Calling & Snp Filtering
quality calling samtools snp written 6.0 years ago by pavenhuizen • 70 • updated 6.0 years ago by Adrian Pelin • 2.3k
2
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1
answer
1.6k
views
1
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How To Deal With Wild-Type Versus No-Calls In Exomes?
exome calling variant human written 6.1 years ago by Chris Cole • 740 • updated 6.1 years ago by Daniel Swan ♦ 13k
3
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1
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2.6k
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1
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Fasta File For Exomedepth And Cnv Calling
exon R ngs calling cnv exome written 6.1 years ago by Jimbou • 710
0
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1
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2.2k
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1
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Realignertargetcreator --- Arrayindexoutofboundsexception
gatk next-gen calling variant written 7.6 years ago by sandeep.deverasetty • 60 • updated 6.2 years ago by Biostar ♦♦ 20
4
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1
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4.2k
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6 follow
1
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How To Prepare Gatk .Vcf Files Output For Annovar ?
vcf gatk calling variant annovar written 6.6 years ago by newDNASeqer • 670 • updated 6.6 years ago by Malachi Griffith ♦ 18k
7
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2
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4.1k
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7 follow
2
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Paper Or Detailed Tutorial For Dna Variant Calling Pipeline? Need Help To Start
variant calling pipeline dna written 6.6 years ago by newDNASeqer • 670 • updated 6.6 years ago by rob234king • 580
13
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4
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8.5k
views
9 follow
4
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How To Interprete/Display .Vcf Data File?
vcf calling variant written 6.6 years ago by newDNASeqer • 670 • updated 6.6 years ago by alaincoletta • 160
1
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1
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9.1k
views
5 follow
1
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Paired-End Reads Alignment For Variant Calling ?
calling gatk paired-end picard variant written 6.6 years ago by newDNASeqer • 670 • updated 6.6 years ago by Ashutosh Pandey ♦ 12k
6
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2
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3.3k
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2
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Chip Seq Analysis Using Macs At A Pvalue Of 1E-2 Then Interesecting To Call "True Peaks"
macs calling peak-calling written 6.7 years ago by jhrf • 10 • updated 6.7 years ago by alessandro.riccombeni • 20
<prev • 47 results • page 1 of 2 • next >
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