Showing: callingreset
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How to detect False positive variant in repeat region ?
vcf calling bam written 4 months ago by istdasklar0 • updated 4 months ago by Kevin Blighe24k
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mpileup for PacBio reads
quiver calling pacbio mpileup variants written 15 months ago by Biomonika (Noolean)3.0k • updated 7 months ago by tjduncan170
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Detecting Structural variants in sequencing data
structural variants calling svs sequencing written 13 months ago by Glen0 • updated 8 months ago by Biostar ♦♦ 20
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VCF Indel line structure: what is actually reported?
indel vcf calling variant snp written 15 months ago by Macspider2.4k • updated 13 months ago by Biostar ♦♦ 20
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Variant Calling problem - find alternate heterozygous
vcf calling heterozygous variant written 20 months ago by Paul1.1k • updated 20 months ago by Zaag620
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INDEL and point mutation at same position in VCF
vcf indels calling snps alignment written 3.1 years ago by simono10120 • updated 23 months ago by Biostar ♦♦ 20
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Does anyone use Python for variant calling?
python ngs calling variant snp written 2.1 years ago by mhmtgenc8530 • updated 2.1 years ago by Zaag620
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SNP calling pipeline - testing different programs
snp calling mapping filtering written 3.2 years ago by Eric Normandeau9.9k • updated 2.3 years ago by alexisdereeper30
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Snp Calling With Bcftools Using Pileup File Format Instead Of Bcf
calling bcftools snp written 5.0 years ago by Justin440 • updated 3.5 years ago by Biostar ♦♦ 20
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Filtering Variant Calls Based On Genotype Quality
calling variant filtering written 5.8 years ago by Kssr110 • updated 3.6 years ago by Biostar ♦♦ 20
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Haplotype Calling
haplotype calling 454 sequencing written 5.9 years ago by Empyrean160 • updated 3.7 years ago by Biostar ♦♦ 20
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Tetraploid Snp Calling & Snp Filtering
quality calling samtools snp written 4.4 years ago by pavenhuizen70 • updated 4.4 years ago by Adrian Pelin2.1k
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How To Deal With Wild-Type Versus No-Calls In Exomes?
exome calling variant human written 4.4 years ago by Chris Cole660 • updated 4.4 years ago by Daniel Swan13k
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Realignertargetcreator --- Arrayindexoutofboundsexception
gatk next-gen calling variant written 6.0 years ago by sandeep.deverasetty60 • updated 4.6 years ago by Biostar ♦♦ 20
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How To Prepare Gatk .Vcf Files Output For Annovar ?
vcf gatk calling variant annovar written 5.0 years ago by newDNASeqer590 • updated 5.0 years ago by Malachi Griffith16k
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How To Interprete/Display .Vcf Data File?
vcf calling variant written 5.0 years ago by newDNASeqer590 • updated 5.0 years ago by alaincoletta60
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Paired-End Reads Alignment For Variant Calling ?
calling gatk paired-end picard variant written 5.0 years ago by newDNASeqer590 • updated 5.0 years ago by Ashutosh Pandey11k
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How To Call Cnvs From Raw Intensities
array illumina calling written 5.4 years ago by elengss0 • updated 5.4 years ago by Istvan Albert ♦♦ 77k
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State Of The Art In Base-Calling?
sanger calling sequencing written 5.4 years ago by asjo120 • updated 5.4 years ago by Gabriel R.2.4k
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Why There Are A Lot Of Mq0 Reads In Some Particular Regions?
calling variant written 5.5 years ago by lyz10302012270 • updated 5.5 years ago by swbarnes23.8k
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