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<prev • 44 results • page 1 of 2 • next >
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SNP/Mbp rate weird, any known bias/artifact?
mbp calling variant snp bias written 8 days ago by Macspider • 2.4k
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1
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183
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1
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How to detect False positive variant in repeat region ?
vcf calling bam written 8 weeks ago by istdasklar • 0 • updated 8 weeks ago by Kevin Blighe ♦ 17k
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5 follow
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How To Get Consensus Sequence Including Variant From A Vcf File For Several Individuals...?
vcf consensus calling variant gatk written 5.5 years ago by Bioch'Ti • 1000 • updated 9 weeks ago by boczniak767 • 590
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511
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mpileup for PacBio reads
quiver calling pacbio mpileup variants written 12 months ago by Biomonika (Noolean) ♦ 3.0k • updated 4 months ago by tjduncan • 130
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5 follow
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Detecting Structural variants in sequencing data
structural variants calling svs sequencing written 10 months ago by Glen • 0 • updated 5 months ago by Biostar ♦♦ 20
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1
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VCF Indel line structure: what is actually reported?
indel vcf calling variant snp written 12 months ago by Macspider • 2.4k • updated 10 months ago by Biostar ♦♦ 20
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Getting SNPs that are the complementary base of the reference
calling allele variant snp alternative written 13 months ago by Macspider • 2.4k
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421
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1
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VCF Format INFO field: why do some keys in it not appear in the documentation?
vcf format calling snp variants written 16 months ago by Macspider • 2.4k • updated 16 months ago by Pierre Lindenbaum ♦ 106k
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525
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1
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Variant Calling problem - find alternate heterozygous
vcf calling heterozygous variant written 17 months ago by Paul • 1.0k • updated 17 months ago by Zaag • 620
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INDEL and point mutation at same position in VCF
vcf indels calling snps alignment written 2.9 years ago by simono101 • 20 • updated 20 months ago by Biostar ♦♦ 20
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897
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filtering pindel results
indel calling rearrangement filtering pindel written 22 months ago by Tootiki • 40
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1.3k
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Does anyone use Python for variant calling?
python ngs calling variant snp written 23 months ago by mhmtgenc85 • 30 • updated 22 months ago by Zaag • 620
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SNP calling pipeline - testing different programs
snp calling mapping filtering written 3.0 years ago by Eric Normandeau ♦ 9.7k • updated 2.1 years ago by alexisdereeper • 30
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Snp Calling With Bcftools Using Pileup File Format Instead Of Bcf
calling bcftools snp written 4.8 years ago by Justin • 430 • updated 3.3 years ago by Biostar ♦♦ 20
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4.7k
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7 follow
1
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Filtering Variant Calls Based On Genotype Quality
calling variant filtering written 5.5 years ago by Kssr • 110 • updated 3.3 years ago by Biostar ♦♦ 20
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2
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4.8k
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8 follow
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Haplotype Calling
haplotype calling 454 sequencing written 5.7 years ago by Empyrean • 160 • updated 3.4 years ago by Biostar ♦♦ 20
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How Can I Get The Field Of Ac Key-Value Pair In The Info Column In Vcf File?
vcf calling frequency allele variant written 4.2 years ago by cli2 • 0
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Tetraploid Snp Calling & Snp Filtering
quality calling samtools snp written 4.2 years ago by pavenhuizen • 70 • updated 4.2 years ago by Adrian Pelin • 2.1k
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How To Deal With Wild-Type Versus No-Calls In Exomes?
exome calling variant human written 4.2 years ago by Chris Cole • 640 • updated 4.2 years ago by Daniel Swan ♦ 13k
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Fasta File For Exomedepth And Cnv Calling
exon R ngs calling cnv exome written 4.3 years ago by Jimbou • 650
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Realignertargetcreator --- Arrayindexoutofboundsexception
gatk next-gen calling variant written 5.8 years ago by sandeep.deverasetty • 60 • updated 4.4 years ago by Biostar ♦♦ 20
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6 follow
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How To Prepare Gatk .Vcf Files Output For Annovar ?
vcf gatk calling variant annovar written 4.8 years ago by newDNASeqer • 590 • updated 4.8 years ago by Malachi Griffith ♦ 16k
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7 follow
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Paper Or Detailed Tutorial For Dna Variant Calling Pipeline? Need Help To Start
variant calling pipeline dna written 4.8 years ago by newDNASeqer • 590 • updated 4.8 years ago by rob234king • 550
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9 follow
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How To Interprete/Display .Vcf Data File?
vcf calling variant written 4.8 years ago by newDNASeqer • 590 • updated 4.8 years ago by alaincoletta • 60
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5 follow
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Paired-End Reads Alignment For Variant Calling ?
calling gatk paired-end picard variant written 4.8 years ago by newDNASeqer • 590 • updated 4.8 years ago by Ashutosh Pandey ♦ 11k
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Chip Seq Analysis Using Macs At A Pvalue Of 1E-2 Then Interesecting To Call "True Peaks"
macs calling peak-calling written 4.8 years ago by jhrf • 10 • updated 4.8 years ago by alessandro.riccombeni • 20
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Does Anybody Know Which Gatk Walkers Are Positively Affected By Pedigree Information?
gatk calling written 5.0 years ago by Matt Miossec • 320 • updated 5.0 years ago by vdauwera • 700
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How To Call Cnvs From Raw Intensities
array illumina calling written 5.1 years ago by elengss • 0 • updated 5.1 years ago by Istvan Albert ♦♦ 76k
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1.5k
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6 follow
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State Of The Art In Base-Calling?
sanger calling sequencing written 5.2 years ago by asjo • 120 • updated 5.2 years ago by Gabriel R. • 2.4k
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Why There Are A Lot Of Mq0 Reads In Some Particular Regions?
calling variant written 5.3 years ago by lyz10302012 • 270 • updated 5.3 years ago by swbarnes2 ♦ 3.4k
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