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<prev • 42 results • page 1 of 2 • next >
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VCF Indel line structure: what is actually reported?
indel vcf calling variant snp written 5 months ago by Macspider • 1.5k • updated 3 months ago by Biostar ♦♦ 20
1
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0
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174
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0
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Detecting Structural variants in sequencing data
structural variants calling svs sequencing written 3 months ago by Glen • 0
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0
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216
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0
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mpileup for PacBio reads
quiver calling pacbio mpileup variants written 5 months ago by Biomonika (Noolean) ♦ 3.0k
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0
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176
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0
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Getting SNPs that are the complementary base of the reference
calling allele variant snp alternative written 6 months ago by Macspider • 1.5k
3
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1
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291
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1
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VCF Format INFO field: why do some keys in it not appear in the documentation?
vcf format calling snp variants written 9 months ago by Macspider • 1.5k • updated 9 months ago by Pierre Lindenbaum ♦ 98k
4
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1
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349
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1
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Variant Calling problem - find alternate heterozygous
vcf calling heterozygous variant written 10 months ago by Paul • 700 • updated 10 months ago by Zaag • 610
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0
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869
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INDEL and point mutation at same position in VCF
vcf indels calling snps alignment written 2.3 years ago by simono101 • 20 • updated 13 months ago by Biostar ♦♦ 20
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1
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600
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1
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filtering pindel results
indel calling rearrangement filtering pindel written 14 months ago by Tootiki • 0
27
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6
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931
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6
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Does anyone use Python for variant calling?
python ngs calling variant snp written 16 months ago by mhmtgenc85 • 20 • updated 15 months ago by Zaag • 610
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5
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2.4k
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5
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SNP calling pipeline - testing different programs
snp calling mapping filtering written 2.4 years ago by Eric Normandeau ♦ 9.5k • updated 18 months ago by alexisdereeper • 20
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1
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3.3k
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1
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Snp Calling With Bcftools Using Pileup File Format Instead Of Bcf
calling bcftools snp written 4.2 years ago by Justin • 430 • updated 2.7 years ago by Biostar ♦♦ 20
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1
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4.3k
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7 follow
1
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Filtering Variant Calls Based On Genotype Quality
calling variant filtering written 4.9 years ago by Kssr • 110 • updated 2.8 years ago by Biostar ♦♦ 20
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2
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4.4k
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8 follow
2
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Haplotype Calling
haplotype calling 454 sequencing written 5.1 years ago by Empyrean • 150 • updated 2.8 years ago by Biostar ♦♦ 20
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3
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3
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How Can I Get The Field Of Ac Key-Value Pair In The Info Column In Vcf File?
vcf calling frequency allele variant written 3.6 years ago by cli2 • 0
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1
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4.5k
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6 follow
1
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Tetraploid Snp Calling & Snp Filtering
quality calling samtools snp written 3.6 years ago by pavenhuizen • 60 • updated 3.6 years ago by Adrian Pelin • 2.0k
2
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1
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1.0k
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1
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How To Deal With Wild-Type Versus No-Calls In Exomes?
exome calling variant human written 3.6 years ago by Chris Cole • 630 • updated 3.6 years ago by Daniel Swan ♦ 13k
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1
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1.5k
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1
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Fasta File For Exomedepth And Cnv Calling
exon R ngs calling cnv exome written 3.7 years ago by Jimbou • 580
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1
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1.5k
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1
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Realignertargetcreator --- Arrayindexoutofboundsexception
gatk next-gen calling variant written 5.2 years ago by sandeep.deverasetty • 60 • updated 3.8 years ago by Biostar ♦♦ 20
4
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1
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2.8k
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6 follow
1
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How To Prepare Gatk .Vcf Files Output For Annovar ?
vcf gatk calling variant annovar written 4.2 years ago by newDNASeqer • 560 • updated 4.2 years ago by Malachi Griffith ♦ 15k
7
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2
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3.3k
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7 follow
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Paper Or Detailed Tutorial For Dna Variant Calling Pipeline? Need Help To Start
variant calling pipeline dna written 4.2 years ago by newDNASeqer • 560 • updated 4.2 years ago by rob234king • 530
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4
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5.1k
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9 follow
4
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How To Interprete/Display .Vcf Data File?
vcf calling variant written 4.2 years ago by newDNASeqer • 560 • updated 4.2 years ago by alaincoletta • 60
1
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1
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7.7k
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5 follow
1
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Paired-End Reads Alignment For Variant Calling ?
calling gatk paired-end picard variant written 4.2 years ago by newDNASeqer • 560 • updated 4.2 years ago by Ashutosh Pandey ♦ 11k
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2
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2.3k
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Chip Seq Analysis Using Macs At A Pvalue Of 1E-2 Then Interesecting To Call "True Peaks"
macs calling peak-calling written 4.2 years ago by jhrf • 10 • updated 4.2 years ago by alessandro.riccombeni • 20
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1
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Does Anybody Know Which Gatk Walkers Are Positively Affected By Pedigree Information?
gatk calling written 4.4 years ago by Matt Miossec • 320 • updated 4.4 years ago by vdauwera • 560
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1.0k
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0
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How To Call Cnvs From Raw Intensities
array illumina calling written 4.5 years ago by elengss • 0 • updated 4.5 years ago by Istvan Albert ♦♦ 73k
7
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2
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1.4k
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6 follow
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State Of The Art In Base-Calling?
sanger calling sequencing written 4.6 years ago by asjo • 120 • updated 4.6 years ago by Gabriel R. • 2.0k
8
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3
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2.0k
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3
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Why There Are A Lot Of Mq0 Reads In Some Particular Regions?
calling variant written 4.7 years ago by lyz10302012 • 260 • updated 4.7 years ago by swbarnes2 ♦ 2.8k
19
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2
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6.7k
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7 follow
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What Does The Zero Mapping Quality Mean For The Bwa Mapper?
calling variant mapping bwa written 4.7 years ago by lyz10302012 • 260
9
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2
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3.2k
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5 follow
2
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Haloplex & Allele Calling
next-gen samtools allele gatk calling duplicates written 4.7 years ago by Pierre Lindenbaum ♦ 98k • updated 4.7 years ago by Daniel Swan ♦ 13k
12
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2
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2.3k
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5 follow
2
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Ways To Filter Noise From Rnaseq Data
calling variant rna-seq sequencing written 4.8 years ago by Wayne • 910 • updated 4.8 years ago by JC ♦ 6.2k
<prev • 42 results • page 1 of 2 • next >
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