Showing: callingreset
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GATK Panel Of Normals (PoN)
gatk beta calling variant written 13 months ago by Barry Digby230 • updated 7 months ago by esraesmeray199010
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Problems When Calling Snps Using Samtools Mpileup
calling samtools snp written 7.0 years ago by 20 • updated 7 months ago by Biostar ♦♦ 20
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Nanopore SNP and indels calling tool
snps indels tools calling nanopore written 16 months ago by tarek.mohamed250 • updated 12 months ago by WouterDeCoster42k
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How to detect False positive variant in repeat region ?
vcf calling bam written 21 months ago by istdasklar0 • updated 21 months ago by Kevin Blighe52k
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5 follow
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mpileup for PacBio reads
quiver calling pacbio mpileup variants written 2.6 years ago by Biomonika (Noolean)3.1k • updated 24 months ago by tjduncan250
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Detecting Structural variants in sequencing data
structural variants calling svs sequencing written 2.5 years ago by Glen20 • updated 2.1 years ago by Biostar ♦♦ 20
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VCF Indel line structure: what is actually reported?
indel vcf calling variant snp written 2.7 years ago by Macspider3.0k • updated 2.5 years ago by Biostar ♦♦ 20
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Variant Calling problem - find alternate heterozygous
vcf calling heterozygous variant written 3.0 years ago by Paul1.4k • updated 3.0 years ago by Zaag720
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INDEL and point mutation at same position in VCF
vcf indels calling snps alignment written 4.5 years ago by simono10120 • updated 3.3 years ago by Biostar ♦♦ 20
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Does anyone use Python for variant calling?
python ngs calling variant snp written 3.5 years ago by mhmtgenc8540 • updated 3.5 years ago by Zaag720
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SNP calling pipeline - testing different programs
snp calling mapping filtering written 4.6 years ago by Eric Normandeau10k • updated 3.7 years ago by alexisdereeper30
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Snp Calling With Bcftools Using Pileup File Format Instead Of Bcf
calling bcftools snp written 6.4 years ago by Justin440 • updated 4.9 years ago by Biostar ♦♦ 20
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7 follow
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Filtering Variant Calls Based On Genotype Quality
calling variant filtering written 7.1 years ago by Kssr110 • updated 5.0 years ago by Biostar ♦♦ 20
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8 follow
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Haplotype Calling
haplotype calling 454 sequencing written 7.3 years ago by Empyrean160 • updated 5.0 years ago by Biostar ♦♦ 20
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Tetraploid Snp Calling & Snp Filtering
quality calling samtools snp written 5.8 years ago by pavenhuizen70 • updated 5.8 years ago by Adrian Pelin2.3k
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How To Deal With Wild-Type Versus No-Calls In Exomes?
exome calling variant human written 5.8 years ago by Chris Cole720 • updated 5.8 years ago by Daniel Swan13k
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Realignertargetcreator --- Arrayindexoutofboundsexception
gatk next-gen calling variant written 7.4 years ago by sandeep.deverasetty60 • updated 6.0 years ago by Biostar ♦♦ 20
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How To Prepare Gatk .Vcf Files Output For Annovar ?
vcf gatk calling variant annovar written 6.4 years ago by newDNASeqer650 • updated 6.4 years ago by Malachi Griffith18k
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9 follow
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How To Interprete/Display .Vcf Data File?
vcf calling variant written 6.4 years ago by newDNASeqer650 • updated 6.4 years ago by alaincoletta160
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Paired-End Reads Alignment For Variant Calling ?
calling gatk paired-end picard variant written 6.4 years ago by newDNASeqer650 • updated 6.4 years ago by Ashutosh Pandey11k
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