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3
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Call alternative base for each position in a bam file
calling bam written 6 months ago by sacha2.0k • updated 6 months ago by dariober11k
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3
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Why There Are A Lot Of Mq0 Reads In Some Particular Regions?
calling variant written 8.0 years ago by lyz10302012360 • updated 10 months ago by Biostar ♦♦ 20
5
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1
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666
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0
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1
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GATK Panel Of Normals (PoN)
gatk beta calling variant written 2.2 years ago by Barry Digby630 • updated 20 months ago by esraesmeray199020
5
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2
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5.6k
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2
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Problems When Calling Snps Using Samtools Mpileup
calling samtools snp written 8.1 years ago by 20 • updated 21 months ago by Biostar ♦♦ 20
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1
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1
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Nanopore SNP and indels calling tool
snps indels tools calling nanopore written 2.5 years ago by tarek.mohamed270 • updated 2.1 years ago by WouterDeCoster45k
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2
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How to detect False positive variant in repeat region ?
vcf calling bam written 2.9 years ago by istdasklar0 • updated 2.9 years ago by Kevin Blighe69k
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3
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6 follow
3
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1
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1.6k
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mpileup for PacBio reads
quiver calling pacbio mpileup variants written 3.7 years ago by Biomonika (Noolean)3.1k • updated 3.1 years ago by tjduncan270
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7 follow
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Detecting Structural variants in sequencing data
structural variants calling svs sequencing written 3.6 years ago by Glen20 • updated 3.2 years ago by Biostar ♦♦ 20
1
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1
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VCF Indel line structure: what is actually reported?
indel vcf calling variant snp written 3.8 years ago by Macspider3.3k • updated 3.6 years ago by Biostar ♦♦ 20
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4
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Variant Calling problem - find alternate heterozygous
vcf calling heterozygous variant written 4.2 years ago by Paul1.4k • updated 4.2 years ago by Zaag800
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2.0k
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INDEL and point mutation at same position in VCF
vcf indels calling snps alignment written 5.6 years ago by simono10120 • updated 4.4 years ago by Biostar ♦♦ 20
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27
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6
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Does anyone use Python for variant calling?
python ngs calling variant snp written 4.6 years ago by mhmtgenc8540 • updated 4.6 years ago by Zaag800
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SNP calling pipeline - testing different programs
snp calling mapping filtering written 5.7 years ago by Eric Normandeau10k • updated 4.8 years ago by alexisdereeper30
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1
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Snp Calling With Bcftools Using Pileup File Format Instead Of Bcf
calling bcftools snp written 7.5 years ago by Justin450 • updated 6.0 years ago by Biostar ♦♦ 20
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7 follow
1
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Filtering Variant Calls Based On Genotype Quality
calling variant filtering written 8.3 years ago by Kssr110 • updated 6.1 years ago by Biostar ♦♦ 20
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8 follow
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Haplotype Calling
haplotype calling 454 sequencing written 8.4 years ago by Empyrean160 • updated 6.2 years ago by Biostar ♦♦ 20
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2
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11
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10 follow
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Tetraploid Snp Calling & Snp Filtering
quality calling samtools snp written 6.9 years ago by pavenhuizen90 • updated 6.9 years ago by Adrian Pelin2.4k
2
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1
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1.8k
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1
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How To Deal With Wild-Type Versus No-Calls In Exomes?
exome calling variant human written 6.9 years ago by Chris Cole760 • updated 6.9 years ago by User 5913k
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Realignertargetcreator --- Arrayindexoutofboundsexception
gatk next-gen calling variant written 8.5 years ago by sandeep.deverasetty60 • updated 7.1 years ago by Biostar ♦♦ 20
4
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6 follow
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How To Prepare Gatk .Vcf Files Output For Annovar ?
vcf gatk calling variant annovar written 7.5 years ago by newDNASeqer710 • updated 7.5 years ago by Malachi Griffith18k
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7 follow
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13
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9 follow
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How To Interprete/Display .Vcf Data File?
vcf calling variant written 7.5 years ago by newDNASeqer710 • updated 7.5 years ago by alaincoletta160
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