Latest
Open
RNA-Seq
ChIP-Seq
SNP
Assembly
Tutorials
Tools
Jobs
Forum
Planet
All »
Home
Log In
Showing: calling • reset
or   Classic search
<prev • 45 results • page 1 of 2 • next >
0
votes
0
answers
220
views
0
answers
Nanopore SNP and indels calling tool
snps indels tools calling nanopore written 9 weeks ago by tarek.mohamed • 180
0
votes
0
answers
143
views
0
answers
SNP/Mbp rate weird, any known bias/artifact?
mbp calling variant snp bias written 5 months ago by Macspider • 2.5k
2
votes
1
answer
375
views
1
answer
How to detect False positive variant in repeat region ?
vcf calling bam written 6 months ago by istdasklar • 0 • updated 6 months ago by Kevin Blighe ♦ 28k
3
votes
3
answers
5.7k
views
5 follow
3
answers
How To Get Consensus Sequence Including Variant From A Vcf File For Several Individuals...?
vcf consensus calling variant gatk written 6.0 years ago by Bioch'Ti • 1000 • updated 7 months ago by boczniak767 • 600
0
votes
1
answer
718
views
1
answer
mpileup for PacBio reads
quiver calling pacbio mpileup variants written 17 months ago by Biomonika (Noolean) ♦ 3.0k • updated 9 months ago by tjduncan • 190
3
votes
0
answers
904
views
7 follow
0
answers
Detecting Structural variants in sequencing data
structural variants calling svs sequencing written 15 months ago by Glen • 20 • updated 10 months ago by Biostar ♦♦ 20
1
vote
1
answer
566
views
1
answer
VCF Indel line structure: what is actually reported?
indel vcf calling variant snp written 17 months ago by Macspider • 2.5k • updated 15 months ago by Biostar ♦♦ 20
0
votes
0
answers
464
views
0
answers
Getting SNPs that are the complementary base of the reference
calling allele variant snp alternative written 18 months ago by Macspider • 2.5k
3
votes
1
answer
516
views
1
answer
VCF Format INFO field: why do some keys in it not appear in the documentation?
vcf format calling snp variants written 21 months ago by Macspider • 2.5k • updated 21 months ago by Pierre Lindenbaum ♦ 112k
4
votes
1
answer
634
views
1
answer
Variant Calling problem - find alternate heterozygous
vcf calling heterozygous variant written 22 months ago by Paul • 1.1k • updated 22 months ago by Zaag • 640
4
votes
0
answers
1.2k
views
0
answers
INDEL and point mutation at same position in VCF
vcf indels calling snps alignment written 3.3 years ago by simono101 • 20 • updated 2.1 years ago by Biostar ♦♦ 20
2
votes
1
answer
1.1k
views
1
answer
filtering pindel results
indel calling rearrangement filtering pindel written 2.2 years ago by Tootiki • 40
27
votes
6
answers
1.7k
views
6
answers
Does anyone use Python for variant calling?
python ngs calling variant snp written 2.3 years ago by mhmtgenc85 • 30 • updated 2.3 years ago by Zaag • 640
9
votes
5
answers
3.1k
views
5
answers
SNP calling pipeline - testing different programs
snp calling mapping filtering written 3.4 years ago by Eric Normandeau ♦ 9.9k • updated 2.5 years ago by alexisdereeper • 30
5
votes
1
answer
3.9k
views
1
answer
Snp Calling With Bcftools Using Pileup File Format Instead Of Bcf
calling bcftools snp written 5.2 years ago by Justin • 440 • updated 3.7 years ago by Biostar ♦♦ 20
4
votes
1
answer
4.9k
views
7 follow
1
answer
Filtering Variant Calls Based On Genotype Quality
calling variant filtering written 5.9 years ago by Kssr • 110 • updated 3.8 years ago by Biostar ♦♦ 20
7
votes
2
answers
5.1k
views
8 follow
2
answers
Haplotype Calling
haplotype calling 454 sequencing written 6.1 years ago by Empyrean • 160 • updated 3.8 years ago by Biostar ♦♦ 20
1
vote
3
answers
2.1k
views
3
answers
How Can I Get The Field Of Ac Key-Value Pair In The Info Column In Vcf File?
vcf calling frequency allele variant written 4.6 years ago by cli2 • 0
10
votes
1
answer
5.6k
views
9 follow
1
answer
Tetraploid Snp Calling & Snp Filtering
quality calling samtools snp written 4.6 years ago by pavenhuizen • 70 • updated 4.6 years ago by Adrian Pelin • 2.2k
2
votes
1
answer
1.3k
views
1
answer
How To Deal With Wild-Type Versus No-Calls In Exomes?
exome calling variant human written 4.6 years ago by Chris Cole • 670 • updated 4.6 years ago by Daniel Swan ♦ 13k
3
votes
1
answer
2.0k
views
1
answer
Fasta File For Exomedepth And Cnv Calling
exon R ngs calling cnv exome written 4.7 years ago by Jimbou • 680
0
votes
1
answer
1.8k
views
1
answer
Realignertargetcreator --- Arrayindexoutofboundsexception
gatk next-gen calling variant written 6.2 years ago by sandeep.deverasetty • 60 • updated 4.8 years ago by Biostar ♦♦ 20
4
votes
1
answer
3.4k
views
6 follow
1
answer
How To Prepare Gatk .Vcf Files Output For Annovar ?
vcf gatk calling variant annovar written 5.2 years ago by newDNASeqer • 600 • updated 5.2 years ago by Malachi Griffith ♦ 16k
7
votes
2
answers
3.7k
views
7 follow
2
answers
Paper Or Detailed Tutorial For Dna Variant Calling Pipeline? Need Help To Start
variant calling pipeline dna written 5.2 years ago by newDNASeqer • 600 • updated 5.2 years ago by rob234king • 560
13
votes
4
answers
6.7k
views
9 follow
4
answers
How To Interprete/Display .Vcf Data File?
vcf calling variant written 5.2 years ago by newDNASeqer • 600 • updated 5.2 years ago by alaincoletta • 60
1
vote
1
answer
8.4k
views
5 follow
1
answer
Paired-End Reads Alignment For Variant Calling ?
calling gatk paired-end picard variant written 5.2 years ago by newDNASeqer • 600 • updated 5.2 years ago by Ashutosh Pandey ♦ 11k
6
votes
2
answers
2.8k
views
2
answers
Chip Seq Analysis Using Macs At A Pvalue Of 1E-2 Then Interesecting To Call "True Peaks"
macs calling peak-calling written 5.2 years ago by jhrf • 10 • updated 5.2 years ago by alessandro.riccombeni • 20
1
vote
1
answer
2.0k
views
1
answer
Does Anybody Know Which Gatk Walkers Are Positively Affected By Pedigree Information?
gatk calling written 5.4 years ago by Matt Miossec • 320 • updated 5.4 years ago by vdauwera • 810
0
votes
0
answers
1.3k
views
0
answers
How To Call Cnvs From Raw Intensities
array illumina calling written 5.5 years ago by elengss • 0 • updated 5.5 years ago by Istvan Albert ♦♦ 77k
7
votes
2
answers
1.6k
views
6 follow
2
answers
State Of The Art In Base-Calling?
sanger calling sequencing written 5.6 years ago by asjo • 120 • updated 5.6 years ago by Gabriel R. • 2.5k
<prev • 45 results • page 1 of 2 • next >
Recent Votes
Recent Locations • All »
  • USA / Europe / Brazil, 1 minute ago
  • Brazil, 5 minutes ago
  • United Kingdom, 5 minutes ago
  • China, Beijing, IGDB, 5 minutes ago
  • United States, 7 minutes ago
Recent Awards • All »
Recent Replies
Content
Help
Access
Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 756 users visited in the last hour