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<prev • 48 results • page 1 of 2 • next >
3
votes
1
answer
117
views
1
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Call alternative base for each position in a bam file
calling bam written 9 weeks ago by sacha • 1.9k • updated 9 weeks ago by dariober ♦ 11k
8
votes
3
answers
3.6k
views
3
answers
Why There Are A Lot Of Mq0 Reads In Some Particular Regions?
calling variant written 7.7 years ago by lyz10302012 • 360 • updated 6 months ago by Biostar ♦♦ 20
5
votes
1
answer
550
views
1
answer
Methods for Doing Consensus Variant Calling between multiple callers
consensus wes calling variant dna written 13 months ago by djevanclark • 40
0
votes
1
answer
2.1k
views
1
answer
GATK Panel Of Normals (PoN)
gatk beta calling variant written 22 months ago by Barry Digby • 460 • updated 16 months ago by esraesmeray1990 • 20
5
votes
2
answers
5.5k
views
2
answers
Problems When Calling Snps Using Samtools Mpileup
calling samtools snp written 7.8 years ago by 玄 • 20 • updated 17 months ago by Biostar ♦♦ 20
3
votes
1
answer
2.9k
views
1
answer
Nanopore SNP and indels calling tool
snps indels tools calling nanopore written 2.2 years ago by tarek.mohamed • 270 • updated 22 months ago by WouterDeCoster ♦ 44k
0
votes
0
answers
486
views
0
answers
SNP/Mbp rate weird, any known bias/artifact?
mbp calling variant snp bias written 2.4 years ago by Macspider • 3.1k
2
votes
1
answer
1.2k
views
1
answer
How to detect False positive variant in repeat region ?
vcf calling bam written 2.6 years ago by istdasklar • 0 • updated 2.6 years ago by Kevin Blighe ♦ 65k
3
votes
3
answers
7.7k
views
5 follow
3
answers
How To Get Consensus Sequence Including Variant From A Vcf File For Several Individuals...?
vcf consensus calling variant gatk written 7.9 years ago by Bioch'Ti • 1.0k • updated 2.6 years ago by boczniak767 • 690
0
votes
1
answer
1.5k
views
1
answer
mpileup for PacBio reads
quiver calling pacbio mpileup variants written 3.4 years ago by Biomonika (Noolean) ♦ 3.1k • updated 2.8 years ago by tjduncan • 260
3
votes
0
answers
1.9k
views
7 follow
0
answers
Detecting Structural variants in sequencing data
structural variants calling svs sequencing written 3.3 years ago by Glen • 20 • updated 2.9 years ago by Biostar ♦♦ 20
1
vote
1
answer
932
views
1
answer
VCF Indel line structure: what is actually reported?
indel vcf calling variant snp written 3.4 years ago by Macspider • 3.1k • updated 3.2 years ago by Biostar ♦♦ 20
0
votes
0
answers
862
views
0
answers
Getting SNPs that are the complementary base of the reference
calling allele variant snp alternative written 3.5 years ago by Macspider • 3.1k
4
votes
1
answer
1.1k
views
1
answer
VCF Format INFO field: why do some keys in it not appear in the documentation?
vcf format calling snp variants written 3.8 years ago by Macspider • 3.1k • updated 3.8 years ago by Pierre Lindenbaum ♦ 130k
5
votes
1
answer
1.0k
views
1
answer
Variant Calling problem - find alternate heterozygous
vcf calling heterozygous variant written 3.8 years ago by Paul • 1.4k • updated 3.8 years ago by Zaag • 800
4
votes
0
answers
1.9k
views
0
answers
INDEL and point mutation at same position in VCF
vcf indels calling snps alignment written 5.3 years ago by simono101 • 20 • updated 4.1 years ago by Biostar ♦♦ 20
2
votes
1
answer
1.8k
views
1
answer
filtering pindel results
indel calling rearrangement filtering pindel written 4.2 years ago by Tootiki • 40
27
votes
6
answers
3.1k
views
6
answers
Does anyone use Python for variant calling?
python ngs calling variant snp written 4.3 years ago by mhmtgenc85 • 40 • updated 4.3 years ago by Zaag • 800
10
votes
5
answers
3.9k
views
5
answers
SNP calling pipeline - testing different programs
snp calling mapping filtering written 5.4 years ago by Eric Normandeau ♦ 10k • updated 4.5 years ago by alexisdereeper • 30
5
votes
1
answer
4.9k
views
1
answer
Snp Calling With Bcftools Using Pileup File Format Instead Of Bcf
calling bcftools snp written 7.2 years ago by Justin • 450 • updated 5.7 years ago by Biostar ♦♦ 20
4
votes
1
answer
5.7k
views
7 follow
1
answer
Filtering Variant Calls Based On Genotype Quality
calling variant filtering written 7.9 years ago by Kssr • 110 • updated 5.7 years ago by Biostar ♦♦ 20
7
votes
2
answers
6.1k
views
8 follow
2
answers
Haplotype Calling
haplotype calling 454 sequencing written 8.1 years ago by Empyrean • 160 • updated 5.8 years ago by Biostar ♦♦ 20
1
vote
2
answers
2.8k
views
2
answers
How Can I Get The Field Of Ac Key-Value Pair In The Info Column In Vcf File?
vcf calling frequency allele variant written 6.6 years ago by cli2 • 0
11
votes
1
answer
6.9k
views
10 follow
1
answer
Tetraploid Snp Calling & Snp Filtering
quality calling samtools snp written 6.6 years ago by pavenhuizen • 70 • updated 6.6 years ago by Adrian Pelin • 2.4k
2
votes
1
answer
1.7k
views
1
answer
How To Deal With Wild-Type Versus No-Calls In Exomes?
exome calling variant human written 6.6 years ago by Chris Cole • 760 • updated 6.6 years ago by Daniel Swan ♦ 13k
3
votes
1
answer
2.9k
views
1
answer
Fasta File For Exomedepth And Cnv Calling
exon R ngs calling cnv exome written 6.7 years ago by Jimbou • 770
0
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1
answer
2.3k
views
1
answer
Realignertargetcreator --- Arrayindexoutofboundsexception
gatk next-gen calling variant written 8.2 years ago by sandeep.deverasetty • 60 • updated 6.8 years ago by Biostar ♦♦ 20
4
votes
1
answer
4.4k
views
6 follow
1
answer
How To Prepare Gatk .Vcf Files Output For Annovar ?
vcf gatk calling variant annovar written 7.2 years ago by newDNASeqer • 700 • updated 7.2 years ago by Malachi Griffith ♦ 18k
7
votes
2
answers
4.1k
views
7 follow
2
answers
Paper Or Detailed Tutorial For Dna Variant Calling Pipeline? Need Help To Start
variant calling pipeline dna written 7.2 years ago by newDNASeqer • 700 • updated 7.2 years ago by rob234king • 600
13
votes
4
answers
8.9k
views
9 follow
4
answers
How To Interprete/Display .Vcf Data File?
vcf calling variant written 7.2 years ago by newDNASeqer • 700 • updated 7.2 years ago by alaincoletta • 160
<prev • 48 results • page 1 of 2 • next >
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