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written 8 days ago by
shaban.hiba8 • 0
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ATpoint ♦ 14k
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Recent Replies
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C: Running STAR aligner with paired-end and single-end reads simultaneously by
swbarnes2 ♦ 5.0k
Depends on how you are normalizing reads. If you are just generating raw counts, you could just ...
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Could you clarify what exactly you can't reproduce? Both DOSE and ClusterProfiler use fgsea as a ...
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Pierre Lindenbaum ♦ 118k
samtools view -h in.bam | sed '/^[^@]/s/\tMC\:i\:[0-9]*\t/\t/' | samtools view -o out.bam -...
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Hi, 5 years later I have the exact same problem...did you figure it out? Thanks in advance
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C: ATAC-seq : which read length? by
guillaume.rbt • 530
Thank you for the information, I think I will also go for 2*75bp.
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C: Outputting strain name on prokka annotation by
genomax ♦ 64k
Put that command in a loop. This is just an outline. for i in *.fna.gz do name=$(bas...
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C: ATAC-seq : which read length? by
guillaume.rbt • 530
Ok thanks for the tip.
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Lots of data will never have normal residules because it is inherently not normally distributed d...
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C: Outputting strain name on prokka annotation by
genomes_and_MGEs • 0
The question is that I have several genomes to annotate, and it would be great to create a loop t...
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C: How to obtain SNP positions for specific mouse strain using VCF from Sanger Inst by
Ankit • 70
Hi Pierre. I updated bcftools version. Command worked with that. Thanks
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C: ATAC-seq : which read length? by
ATpoint ♦ 14k
ATAC-seq is not fundamentally different from other DNA-seq experiments in that regard. The longer...
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A: Split fai (fasta index) or VCF into N nearly equal total length chunks by
FatihSarigol • 120
I wrote a code that does exactly what I want, if anyone else needs a similar thing, you can find ...
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