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how to treat the value of methylation array

beta value probe tcga cbioportal methylation array written 4.7 years ago by huitianli009 • 0

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1.3k

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cBioPortal 'Mutations' tab

tcga cbioportal written 4.7 years ago by umn_bist • 380

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4.5k

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DIfference in survival times present in TCGA and cBIoPortal

cbioportal written 6.0 years ago by sandhya.p • 10 • updated 4.8 years ago by cying • 10

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Log Odds Ratio in cBio-Portal Mutual Exclusion Analysis

cbioportal written 5.1 years ago by cwb2592 • 10 • updated 5.1 years ago by JJ Gao • 50

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1.4k

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question about CBioprtal

mrna expresion cbioportal written 5.1 years ago by kanwarjag • 1.1k • updated 5.1 years ago by JJ Gao • 50

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Lung Adenocarcinoma (TCGAProvisional) Clinical Data Unknown Sample Name

cbioportal luad clinical data written 5.1 years ago by cankutcubuk • 170

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2.5k

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Sorting the cbioportal web output of oncoprint based on frequency percentage

cbioportal snp cnv written 5.7 years ago by ivivek_ngs • 5.0k • updated 5.7 years ago by JJ Gao • 50

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Recent Replies

C: how to pruned the SNPs to be at least 100 kb apart from each other? Is there any by 924861370 • 0
I just looked it up, but I can't find the right way. Could you explain it in more detail? Thank u...
A: how to pruned the SNPs to be at least 100 kb apart from each other? Is there any by Alex Reynolds ♦ 31k
You could use `vcf2bed` and `closest-features` for verification.
C: Differential analysis isoform level or gene level ? by dsull • 1.7k
It's actually more accurate to get gene-level expression from transcript-level estimates. Many p...
C: TCGA maf to vcf file conversion by Mansoureh.jalilkhany • 0
Hi, I am new to this field and I have a problem with converting MAF file to VCF format with per...
A: Pararellization in GATK 4 by a.alnawfal.1992 • 90
Hi, add "--native-pair-hmm-threads #Of_Threads", i use it as the below command : java -jar...
C: MUMmer plot error. How to resolve? by _r_am ♦ 31k
Hi https://www.biostars.org/u/82361/ I'm deleting our previous conversation so this post can sta...
C: MUMmer plot error. How to resolve? by _r_am ♦ 31k
Sorry about the back and forth, but it was necessary to get your post into shape so people read i...
C: SNPEff output meaning by Hamid Ghaedi • 780
This is a more genetic question than a bioinformatic related question. Anyway I do recommend che...
C: Differential analysis isoform level or gene level ? by xiaoguang • 50
I think some other methods like genome aligned based can get the accurate expression count of gen...
C: NCBI Eutils error forwarding request by GenoMax ♦ 92k
Folks please send in problem tickets [NCBI Help desk][1]. Until NCBI hears from multiple people t...
C: MUMmer plot error. How to resolve? by dan2010eve • 0
I posted the code. I hope this really helps.
C: how to get the geneNames or bedfile from fasta sequences by xiaoguang • 50
also ,excel can help you

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