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Tutorial: BrainArray CDF, annotation, etc

db tutorial brainarray cdf written 4 months ago by Kevin Blighe ♦ 69k

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795

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CDF file for Cytoscan arrays

array cystoscan cdf written 22 months ago by jgarces • 20

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984

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Error in get(cdfname, object 'mm430mmentrezgcdf' not found

rma affy cdf affymetrix written 2.2 years ago by Walter Jessen • 90

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2.6k

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How to use Brainarray CDF for gcrma?

u133aaofav2 gcrma cdf written 4.1 years ago by oolongoni • 10 • updated 3.0 years ago by sinnamone • 0

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1.2k

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How to generate .db package from a custom cdf?

array cdf written 4.6 years ago by Nachocab • 100 • updated 3.3 years ago by lessismore • 930

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5 follow

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Microarray data analysis - pipeline (problem with custom CDF)

arrayexpress rma cdf microarray affymetrix written 3.4 years ago by lessismore • 930 • updated 3.4 years ago by mannoulag1 • 60

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2.7k

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Cdf file problem

R cdf microarray written 5.8 years ago by sam.neaves • 20 • updated 4.3 years ago by fengshugluck • 0

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1.5k

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I can't get the probe location file from metabric

gistic metabric cdf written 6.5 years ago by Avro • 150 • updated 5.1 years ago by Ar Es • 0

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1.4k

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Locating correct CDF file

cdf written 6.0 years ago by susannadowning • 10

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Recent Replies

C: Which adapters to use for trimming? by WouterDeCoster ♦ 45k
Neither have the Illumina adapters.
C: Getting "Floating point exception (core dumped)" when running mauveAligner by Joe ♦ 18k
Those are very big sequences to align still. Mauve is a java tool if I recall, so you will need t...
C: Segmentation fault (core dumped) error with bigWigAverageOverBed by Alex Reynolds ♦ 31k
Chromosome names have to match up to do operations. In other words, `1,chr1` will not match up wi...
C: Beginner to Exome Seq by Pierre Lindenbaum ♦ 133k
> In my excel file there is a column labeled "gnomad filter." https://twitter.com/dgmacarthu...
C: Beginner to Exome Seq by _r_am ♦ 32k
You should be looking at the VCF file and not a tabular file on Excel. Aside from the fact that E...
C: Getting "Floating point exception (core dumped)" when running mauveAligner by langziv • 0
The command I gave was inadequate. I didn't provide an sml file path. Once I did I managed to cal...
C: Stringtie transcripts to Gene Name by vkkodali • 2.4k
If I understand correctly, you don't see `GeneID:40027734` (which corresponds to the gene CJI97_0...
C: Stringtie transcripts to Gene Name by shrivadeepak • 0
Thanks for the reply. I do use the same command with -G, but what i get is the reference ids like...
C: Getting "Floating point exception (core dumped)" when running mauveAligner by langziv • 0
Sorry about the delay. These are crazy days. Yes. I'm runnnig 2 assemblies in every run. I just ...
C: Plotting the loading of single PCs (PCAtools) by Kevin Blighe ♦ 69k
Hello again, this should now work in the version that is on GitHub, i.e., selecting just a single...
C: convert ancestry.com text file to vcf by LTDavid • 20
Hi, Mariana. I'm not sure.
C: Problem with design for DESeq2 by i.sudbery ♦ 10k
The more complex a model, the less powerful the analysis is. The `Disease:Patient.n` involves the...

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