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<prev • 93 results • page 1 of 4 • next >
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CDS prediction for newly assembled transcripts
assembly transcriptome rna-seq cds written 7 hours ago by I0110 • 90
2
votes
1
answer
111
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1
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getting feature annotations for all NCBI Refseq sequences
ncbi annotation refseq cds written 12 days ago by bitpir • 70 • updated 11 days ago by genomax ♦ 48k
0
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0
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95
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best CDS prediction tool for online annotation submission
fasta annotation ghostkoala prodigal cds written 5 weeks ago by willnotburn • 40
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0
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260
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Reference annotation file contains only transcript and CDS information, how to analyze the different expression of genes?
cds exon rna-seq written 6 months ago by zoukai3412085 • 0
0
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0
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261
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get CDS cordinates for genes, excluding UTR
gene cds written 6 months ago by J.F.Jiang • 690
2
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0
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310
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How to recompute coding sequences from a psl format ?
genome alignment sequence gmap cds written 7 months ago by thomas.bawin • 10
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1
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383
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1
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Program that will extract all CDS from protein-coding genes in a genome fasta file (with gff file)
genome gene cds written 7 months ago by molly77 • 10 • updated 7 months ago by Kevin Blighe ♦ 19k
3
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2
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461
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2
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CDS FASTA file as Reference sequence for Ion Torrent
fasta cds .bed next-gen reference written 8 months ago by serenabivona • 10
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404
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how to construct CDS by using annotation file (coordinates) properly ???
cds 1-based coorinates 0-based bam file written 8 months ago by adeena_hassan • 40
4
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1
answer
367
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1
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Ensembl API, command-line argument
ensembl api python bash cds written 8 months ago by oars • 110 • updated 8 months ago by Alex Reynolds ♦ 24k
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1
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1.7k
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1
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How To Add Partial Cds Seqfeature In Biopython?
cds biopython python written 4.9 years ago by Leszek ♦ 3.9k • updated 8 months ago by Biostar ♦♦ 20
7
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2
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455
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7 follow
2
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Locating longest gene, CDS in Ensembl GTF
gtf ensembl longest gene cds written 9 months ago by oars • 110
1
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1
answer
558
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1
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get gene annotation for nucleotide sequence of the NCBI RefSeq database
gene ncbi annotation cds dna written 10 months ago by dabid • 0
2
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1
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432
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1
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GTF file: CDS feature is exon 1, but has frame = 1 or 2
gtf cds exon written 11 months ago by Marvin • 90 • updated 11 months ago by Devon Ryan ♦ 79k
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2
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2
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Retrieving CDS sequences NCBI
ncbi cds batch entrez fasta written 3.0 years ago by vigneshprbh37 • 10 • updated 11 months ago by Biostar ♦♦ 20
2
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1
answer
424
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5 follow
1
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DNA sequences trimming methods
cds trimming sequence dna written 11 months ago by l.souza • 60
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1
answer
391
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1
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Extract CDS from an extracted gene without bioperl
cds tool written 12 months ago by adeena_hassan • 40 • updated 12 months ago by Ben • 50
0
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0
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442
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0
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How to map exon data to CDS from one reference species?
exome cds exon protein mapping written 13 months ago by balasink • 10 • updated 12 months ago by Biostar ♦♦ 20
7
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1
answer
747
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1
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Convert fasta to bed (no gtf available)
genome ensembl bed cds fasta written 13 months ago by bioinfo8 • 90
7
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1
answer
609
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1
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Convert cds .fa to bed
fasta ensembl bed cds ucsc written 13 months ago by bioinfo8 • 90
2
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1
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340
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1
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genome features and sequence parsing
genome cds sequence parsing written 13 months ago by lessismore • 490 • updated 13 months ago by Macspider • 2.4k
2
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2
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487
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5 follow
2
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How to identify the contigs for each predicted cds sequences?
genome augustus output contigs cds written 13 months ago by mirza • 80 • updated 13 months ago by jrj.healey • 4.2k
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4
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2.8k
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6 follow
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How To Get The Coding Sequences (Cds) Based On The Protein Aminoacid Sequence
cds written 4.9 years ago by harrymao20 • 0 • updated 15 months ago by seancho • 40
1
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0
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539
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0
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One sequence with multiple CDS start and end annotation with BioMart Browser
ensembl biomart cdna cds written 17 months ago by david.a.mancilla • 0 • updated 17 months ago by WouterDeCoster ♦ 28k
2
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2
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626
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2
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Retrieval of chromosomal coordinates of coding sequences (CDS)
genome gene cds written 17 months ago by shakeelbiochemist • 0
3
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1
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469
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1
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Find gene on genome from cds
genome cds written 18 months ago by guillaume.rbt • 430
4
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706
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Does having ORF shows the coding potential of a transcript that showed no hit against NCBI nr ?
gene orf alignment blast cds written 18 months ago by Farbod • 3.1k
26
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6
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25k
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17 follow
6
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Extract Cds Fastas From A Gff Annotation + Reference Sequence
cds gff written 6.0 years ago by Federico Giorgi • 380 • updated 19 months ago by sutturka • 110
2
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2
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1.6k
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2
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plotting exons, cds and transcript for a specific gene
gene cds exon transcripts plot written 3.1 years ago by m_punisher6 • 0 • updated 20 months ago by hgarza • 0
1
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637
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choice of reference for transcriptome assembly
assembly cdna rna-seq cds written 21 months ago by sjbasu • 30 • updated 20 months ago by Biostar ♦♦ 20
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