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<prev • 100 results • page 1 of 4 • next >
5
votes
1
answer
172
views
1
answer
'CDS' but not 'exon' in GFF
cds gff exon rna-seq written 29 days ago by NielQC • 10 • updated 16 days ago by tdmurphy • 160
1
vote
1
answer
144
views
1
answer
How to find CDS in Gene Profile?
cds cdna genbank written 5 weeks ago by sagar • 0 • updated 5 weeks ago by genomax ♦ 60k
90
votes
5
answers
121k
views
39 follow
5
answers
What'S The Difference Between Cds And Orf?
cds orf written 6.6 years ago by shiy05 • 280 • updated 6 weeks ago by jazzyl5660 • 0
1
vote
1
answer
1.2k
views
1
answer
determining length of fasta cds and protein sequences
software cds protein fasta written 3.9 years ago by vigneshprbh37 • 20 • updated 7 weeks ago by Biostar ♦♦ 20
2
votes
3
answers
2.1k
views
3
answers
Entrez direct E-utilities - "efetch" command to retrieve CDS with protein accessions does not work
entrez direct e-utilities cds efetch retrieve written 2.3 years ago by al-ash • 70 • updated 3 months ago by h.mon ♦ 22k
0
votes
0
answers
132
views
0
answers
Get CDS from consensus genome assembly
cds consensus_sequence proteins written 3 months ago by yoce_pf • 30
2
votes
1
answer
246
views
5 follow
1
answer
Merging position of all different CDS of a single gene in one line
cds gff gene duplication written 4 months ago by 1234anjalianjali1234 • 30 • updated 4 months ago by rjactonspsfcf • 80
6
votes
1
answer
316
views
5 follow
1
answer
Calculate CDS phase in gff3 format
genome feature format cds gff phase written 4 months ago by marongiu.luigi • 350 • updated 4 months ago by Carambakaracho • 660
0
votes
1
answer
298
views
1
answer
One to one ortholog detection by RBH blast (Reciprocal best hit)
genome cds ortholog rbh blast written 5 months ago by madapada • 0
6
votes
1
answer
332
views
1
answer
CDS sequence from mRNA and protein sequence
fasta cds protein code mrna written 6 months ago by Macspider • 2.7k • updated 6 months ago by lieven.sterck ♦ 3.5k
2
votes
0
answers
557
views
0
answers
How to recompute coding sequences from a psl format ?
genome alignment sequence gmap cds written 15 months ago by Thomas B. • 10 • updated 7 months ago by Biostar ♦♦ 20
2
votes
0
answers
327
views
0
answers
CDS prediction for newly assembled transcripts
assembly transcriptome rna-seq cds written 7 months ago by I0110 • 120
2
votes
1
answer
446
views
1
answer
getting feature annotations for all NCBI Refseq sequences
ncbi annotation refseq cds written 8 months ago by bitpir • 100 • updated 8 months ago by genomax ♦ 60k
0
votes
0
answers
261
views
0
answers
best CDS prediction tool for online annotation submission
fasta annotation ghostkoala prodigal cds written 9 months ago by willnotburn • 40
0
votes
0
answers
439
views
0
answers
Reference annotation file contains only transcript and CDS information, how to analyze the different expression of genes?
cds exon rna-seq written 14 months ago by zoukai3412085 • 0
0
votes
0
answers
381
views
0
answers
get CDS cordinates for genes, excluding UTR
gene cds written 14 months ago by J.F.Jiang • 730
0
votes
1
answer
789
views
1
answer
Program that will extract all CDS from protein-coding genes in a genome fasta file (with gff file)
genome gene cds written 15 months ago by molly77 • 10 • updated 15 months ago by Kevin Blighe ♦ 35k
3
votes
2
answers
731
views
2
answers
CDS FASTA file as Reference sequence for Ion Torrent
fasta cds .bed next-gen reference written 15 months ago by serenabivona • 10
1
vote
0
answers
676
views
0
answers
how to construct CDS by using annotation file (coordinates) properly ???
cds 1-based coorinates 0-based bam file written 15 months ago by adeena_hassan • 40
4
votes
1
answer
618
views
1
answer
Ensembl API, command-line argument
ensembl api python bash cds written 16 months ago by oars • 150 • updated 16 months ago by Alex Reynolds ♦ 27k
0
votes
1
answer
1.9k
views
1
answer
How To Add Partial Cds Seqfeature In Biopython?
cds biopython python written 5.6 years ago by Leszek ♦ 4.0k • updated 16 months ago by Biostar ♦♦ 20
7
votes
2
answers
675
views
7 follow
2
answers
Locating longest gene, CDS in Ensembl GTF
gtf ensembl longest gene cds written 17 months ago by oars • 150
1
vote
1
answer
856
views
1
answer
get gene annotation for nucleotide sequence of the NCBI RefSeq database
gene ncbi annotation cds dna written 18 months ago by dabid • 0
2
votes
1
answer
683
views
1
answer
GTF file: CDS feature is exon 1, but has frame = 1 or 2
gtf cds exon written 19 months ago by Marvin • 120 • updated 19 months ago by Devon Ryan ♦ 87k
1
vote
2
answers
2.6k
views
2
answers
Retrieving CDS sequences NCBI
ncbi cds batch entrez fasta written 3.7 years ago by vigneshprbh37 • 20 • updated 19 months ago by Biostar ♦♦ 20
2
votes
1
answer
615
views
5 follow
1
answer
DNA sequences trimming methods
cds trimming sequence dna written 19 months ago by l.souza • 60
0
votes
1
answer
550
views
1
answer
Extract CDS from an extracted gene without bioperl
cds tool written 19 months ago by adeena_hassan • 40 • updated 19 months ago by Ben • 50
0
votes
0
answers
599
views
0
answers
How to map exon data to CDS from one reference species?
exome cds exon protein mapping written 21 months ago by DNAngel • 20 • updated 20 months ago by Biostar ♦♦ 20
7
votes
1
answer
974
views
1
answer
Convert fasta to bed (no gtf available)
genome ensembl bed cds fasta written 21 months ago by bioinfo8 • 100
7
votes
1
answer
880
views
1
answer
Convert cds .fa to bed
fasta ensembl bed cds ucsc written 21 months ago by bioinfo8 • 100
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