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5
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Easy Way To Map Cds Coordinates To Genomic Coordinates
cds gff coordinates mapping bed written 8.9 years ago by Alper Yilmaz • 90 • updated 19 days ago by Shicheng Guo • 8.0k
1
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0
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93
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0
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How to get a sequence of Clone and do alignment?
gene cds clone written 4 weeks ago by isoBA • 0
1
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1
answer
154
views
1
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How to identify all exons and cds in gene?
gene cds exon dna written 4 weeks ago by isoBA • 0 • updated 4 weeks ago by Pierre Lindenbaum ♦ 126k
2
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2
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176
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2
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Getting CDS from chromosome positions
cds sequence chromosome position genome browser written 3 months ago by drmouradap • 0 • updated 10 weeks ago by Luis Nassar • 330
3
votes
2
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163
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7 follow
2
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Obtaining nucleotide sequences from a set of protein identifiers
sequence cds elink etools entrez written 12 weeks ago by hopf • 10 • updated 12 weeks ago by Chirag Parsania • 1.7k
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157
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5 follow
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How to calculate GC% at 1st, 2nd and 3rd codon position for each sequence in a multifasta
assembly 3rd codon position gc% cds written 12 weeks ago by forni.giobbe • 0 • updated 12 weeks ago by Joe ♦ 16k
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should stop codon be counted as part of CDS
gtf cds stop codon written 3.5 years ago by -_- • 840 • updated 3 months ago by Juke-34 • 3.3k
2
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1
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1.1k
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1
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GTF file: CDS feature is exon 1, but has frame = 1 or 2
gtf cds exon written 2.7 years ago by Marvin • 150 • updated 3 months ago by Biostar ♦♦ 20
1
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0
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143
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0
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Download multiple bacterial CDS from NCBI using Biopython
ncbi cds biopython written 3 months ago by lisssanka • 0
2
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1
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170
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1
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generating 'maximal' cds sequence from multiple isoforms of a gene
gene cds gff written 4 months ago by mforthman • 30 • updated 4 months ago by Brice Sarver • 3.5k
0
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0
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193
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0
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Which file should I use to retrieve CDs following the GenBank Assembly link? No RefSeq available.
ncbi assembly refseq gbff cds written 4 months ago by andrespara • 10
3
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2
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357
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2
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Extract every CDS sequences from a VCF file
vcf cds alignment written 5 months ago by maxime.policarpo • 90 • updated 5 months ago by Pierre Lindenbaum ♦ 126k
0
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1
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187
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1
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a CDS without gene_Id's can be annotated?
genome cds rna-seq written 6 months ago by m986 • 0 • updated 6 months ago by joe555 • 0
4
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2
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285
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2
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CDS file (as reference) can be used for align my fastq files?
cds alignment rna-seq written 6 months ago by m986 • 0 • updated 6 months ago by swbarnes2 ♦ 7.4k
4
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1
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278
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1
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Can Animal protein has different domain from the same protein in different translation frames?
cds translation protein orf frame written 8 months ago by javiersg • 0
3
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1
answer
227
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1
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Mapping aligned reads to UTRs
cds alignment utr rna-seq written 8 months ago by jpcchoy • 0 • updated 8 months ago by Ace • 70
2
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0
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233
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0
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Bulk Download all CDS and UTRs of known genes from ENSEMBL
cds utr ensembl written 8 months ago by Aishwarya Kulkarni • 60 • updated 8 months ago by ATpoint ♦ 29k
2
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0
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419
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0
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Amino acid sequence from CDS information of gff file
cds gff amino acid written 9 months ago by doubleA • 0
5
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2
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314
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2
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Getting proteins from genomic interval of a genbank file
cds proteins genbank biopython written 9 months ago by fhsantanna • 460 • updated 9 months ago by Joe ♦ 16k
2
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3
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3.7k
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3
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Entrez direct E-utilities - "efetch" command to retrieve CDS with protein accessions does not work
entrez direct e-utilities cds efetch retrieve written 3.4 years ago by al-ash • 130 • updated 10 months ago by Biostar ♦♦ 20
10
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431
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5 follow
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Why are the sum of all exons so much longer than CDS?
cds exons written 11 months ago by Jeremy Leipzig ♦ 19k • updated 11 months ago by swbarnes2 ♦ 7.4k
5
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1
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945
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1
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'CDS' but not 'exon' in GFF
cds gff exon rna-seq written 14 months ago by NielQC • 10 • updated 13 months ago by tdmurphy • 190
1
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1
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383
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1
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How to find CDS in Gene Profile?
cds cdna genbank written 14 months ago by sagar • 0 • updated 14 months ago by genomax ♦ 78k
98
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5
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137k
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41 follow
5
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What'S The Difference Between Cds And Orf?
cds orf written 7.7 years ago by shiy05 • 290 • updated 14 months ago by jazzyl5660 • 10
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determining length of fasta cds and protein sequences
software cds protein fasta written 5.0 years ago by vigneshprbh37 • 30 • updated 14 months ago by Biostar ♦♦ 20
0
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0
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361
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0
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Get CDS from consensus genome assembly
cds consensus_sequence proteins written 17 months ago by yoce_pf • 40
2
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1
answer
539
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5 follow
1
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Merging position of all different CDS of a single gene in one line
cds gff gene duplication written 17 months ago by 1234anjalianjali1234 • 30 • updated 17 months ago by rjactonspsfcf • 110
6
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1
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1.1k
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5 follow
1
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Calculate CDS phase in gff3 format
genome feature format cds gff phase written 18 months ago by marongiu.luigi • 460 • updated 18 months ago by Carambakaracho • 2.0k
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1.1k
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1
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One to one ortholog detection by RBH blast (Reciprocal best hit)
genome cds ortholog rbh blast written 18 months ago by madapada • 0
6
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1
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961
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1
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CDS sequence from mRNA and protein sequence
fasta cds protein code mrna written 19 months ago by Macspider • 3.0k • updated 19 months ago by lieven.sterck ♦ 6.9k
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