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<prev • 98 results • page 1 of 4 • next >
2
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3
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1.9k
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3
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Entrez direct E-utilities - "efetch" command to retrieve CDS with protein accessions does not work
entrez direct e-utilities cds efetch retrieve written 2.1 years ago by al-ash • 50 • updated 2 hours ago by h.mon ♦ 20k
0
votes
0
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75
views
0
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Get CDS from consensus genome assembly
cds consensus_sequence proteins written 27 days ago by yoce_pf • 10
2
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1
answer
148
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5 follow
1
answer
Merging position of all different CDS of a single gene in one line
cds gff gene duplication written 5 weeks ago by 1234anjalianjali1234 • 30 • updated 5 weeks ago by rjactonspsfcf • 50
6
votes
1
answer
151
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5 follow
1
answer
Calculate CDS phase in gff3 format
genome feature format cds gff phase written 7 weeks ago by marongiu.luigi • 330 • updated 7 weeks ago by Carambakaracho • 550
0
votes
1
answer
173
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1
answer
One to one ortholog detection by RBH blast (Reciprocal best hit)
genome cds ortholog rbh blast written 9 weeks ago by madapada • 0
1
vote
1
answer
1.1k
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1
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determining length of fasta cds and protein sequences
software cds protein fasta written 3.7 years ago by vigneshprbh37 • 20 • updated 3 months ago by lieven.sterck • 2.6k
6
votes
1
answer
230
views
1
answer
CDS sequence from mRNA and protein sequence
fasta cds protein code mrna written 3 months ago by Macspider • 2.6k • updated 3 months ago by lieven.sterck • 2.6k
2
votes
0
answers
460
views
0
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How to recompute coding sequences from a psl format ?
genome alignment sequence gmap cds written 12 months ago by Thomas B. • 10 • updated 4 months ago by Biostar ♦♦ 20
2
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0
answers
229
views
0
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CDS prediction for newly assembled transcripts
assembly transcriptome rna-seq cds written 4 months ago by I0110 • 110
2
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1
answer
313
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1
answer
getting feature annotations for all NCBI Refseq sequences
ncbi annotation refseq cds written 5 months ago by bitpir • 90 • updated 5 months ago by genomax ♦ 57k
0
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0
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199
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0
answers
best CDS prediction tool for online annotation submission
fasta annotation ghostkoala prodigal cds written 6 months ago by willnotburn • 40
0
votes
0
answers
378
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0
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Reference annotation file contains only transcript and CDS information, how to analyze the different expression of genes?
cds exon rna-seq written 11 months ago by zoukai3412085 • 0
0
votes
0
answers
339
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0
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get CDS cordinates for genes, excluding UTR
gene cds written 11 months ago by J.F.Jiang • 710
0
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1
answer
664
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1
answer
Program that will extract all CDS from protein-coding genes in a genome fasta file (with gff file)
genome gene cds written 12 months ago by molly77 • 10 • updated 12 months ago by Kevin Blighe ♦ 30k
3
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2
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637
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2
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CDS FASTA file as Reference sequence for Ion Torrent
fasta cds .bed next-gen reference written 12 months ago by serenabivona • 10
1
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0
answers
563
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0
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how to construct CDS by using annotation file (coordinates) properly ???
cds 1-based coorinates 0-based bam file written 12 months ago by adeena_hassan • 40
4
votes
1
answer
522
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1
answer
Ensembl API, command-line argument
ensembl api python bash cds written 12 months ago by oars • 150 • updated 12 months ago by Alex Reynolds ♦ 26k
0
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1
answer
1.8k
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1
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How To Add Partial Cds Seqfeature In Biopython?
cds biopython python written 5.3 years ago by Leszek ♦ 3.9k • updated 13 months ago by Biostar ♦♦ 20
7
votes
2
answers
585
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7 follow
2
answers
Locating longest gene, CDS in Ensembl GTF
gtf ensembl longest gene cds written 14 months ago by oars • 150
1
vote
1
answer
735
views
1
answer
get gene annotation for nucleotide sequence of the NCBI RefSeq database
gene ncbi annotation cds dna written 15 months ago by dabid • 0
2
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1
answer
584
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1
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GTF file: CDS feature is exon 1, but has frame = 1 or 2
gtf cds exon written 16 months ago by Marvin • 120 • updated 16 months ago by Devon Ryan ♦ 85k
1
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2
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2.4k
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2
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Retrieving CDS sequences NCBI
ncbi cds batch entrez fasta written 3.4 years ago by vigneshprbh37 • 20 • updated 16 months ago by Biostar ♦♦ 20
2
votes
1
answer
530
views
5 follow
1
answer
DNA sequences trimming methods
cds trimming sequence dna written 16 months ago by l.souza • 60
0
votes
1
answer
498
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1
answer
Extract CDS from an extracted gene without bioperl
cds tool written 16 months ago by adeena_hassan • 40 • updated 16 months ago by Ben • 50
0
votes
0
answers
555
views
0
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How to map exon data to CDS from one reference species?
exome cds exon protein mapping written 18 months ago by balasink • 10 • updated 17 months ago by Biostar ♦♦ 20
7
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1
answer
891
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1
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Convert fasta to bed (no gtf available)
genome ensembl bed cds fasta written 17 months ago by bioinfo8 • 90
7
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1
answer
776
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1
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Convert cds .fa to bed
fasta ensembl bed cds ucsc written 18 months ago by bioinfo8 • 90
2
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1
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431
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1
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genome features and sequence parsing
genome cds sequence parsing written 18 months ago by lessismore • 500 • updated 18 months ago by Macspider • 2.6k
2
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2
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639
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5 follow
2
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How to identify the contigs for each predicted cds sequences?
genome augustus output contigs cds written 18 months ago by mirza • 80 • updated 18 months ago by jrj.healey ♦ 7.6k
3
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4
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3.2k
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6 follow
4
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How To Get The Coding Sequences (Cds) Based On The Protein Aminoacid Sequence
cds written 5.3 years ago by harrymao20 • 0 • updated 19 months ago by seancho • 40
<prev • 98 results • page 1 of 4 • next >
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