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<prev • 113 results • page 1 of 4 • next >
2
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1
answer
1.0k
views
1
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GTF file: CDS feature is exon 1, but has frame = 1 or 2
gtf cds exon written 2.4 years ago by Marvin • 150 • updated 7 days ago by Biostar ♦♦ 20
1
vote
0
answers
71
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0
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Download multiple bacterial CDS from NCBI using Biopython
ncbi cds biopython written 18 days ago by lisssanka • 0
2
votes
1
answer
86
views
1
answer
Getting CDS from chromosome positions
cds sequence chromosome position genome browser written 20 days ago by drmouradap • 0 • updated 20 days ago by JC ♦ 9.1k
2
votes
1
answer
103
views
1
answer
generating 'maximal' cds sequence from multiple isoforms of a gene
gene cds gff written 4 weeks ago by mforthman • 30 • updated 4 weeks ago by Brice Sarver • 3.2k
0
votes
0
answers
131
views
0
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Which file should I use to retrieve CDs following the GenBank Assembly link? No RefSeq available.
ncbi assembly refseq gbff cds written 6 weeks ago by andrespara • 10
2
votes
2
answers
214
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2
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Extract every CDS sequences from a VCF file
vcf cds alignment written 9 weeks ago by maxime.policarpo • 90 • updated 8 weeks ago by Pierre Lindenbaum ♦ 124k
0
votes
1
answer
157
views
1
answer
a CDS without gene_Id's can be annotated?
genome cds rna-seq written 3 months ago by m986 • 0 • updated 3 months ago by joe555 • 0
4
votes
2
answers
216
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2
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CDS file (as reference) can be used for align my fastq files?
cds alignment rna-seq written 3 months ago by m986 • 0 • updated 3 months ago by swbarnes2 ♦ 7.0k
4
votes
1
answer
211
views
1
answer
Can Animal protein has different domain from the same protein in different translation frames?
cds translation protein orf frame written 5 months ago by javiersg • 0
3
votes
1
answer
182
views
1
answer
Mapping aligned reads to UTRs
cds alignment utr rna-seq written 5 months ago by jpcchoy • 0 • updated 5 months ago by Ace • 70
2
votes
0
answers
188
views
0
answers
Bulk Download all CDS and UTRs of known genes from ENSEMBL
cds utr ensembl written 5 months ago by Aishwarya Kulkarni • 60 • updated 5 months ago by ATpoint ♦ 26k
2
votes
0
answers
269
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0
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Amino acid sequence from CDS information of gff file
cds gff amino acid written 6 months ago by doubleA • 0
5
votes
2
answers
251
views
2
answers
Getting proteins from genomic interval of a genbank file
cds proteins genbank biopython written 6 months ago by fhsantanna • 440 • updated 6 months ago by Joe ♦ 15k
2
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3
answers
3.3k
views
3
answers
Entrez direct E-utilities - "efetch" command to retrieve CDS with protein accessions does not work
entrez direct e-utilities cds efetch retrieve written 3.2 years ago by al-ash • 110 • updated 7 months ago by Biostar ♦♦ 20
10
votes
2
answers
365
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5 follow
2
answers
Why are the sum of all exons so much longer than CDS?
cds exons written 8 months ago by Jeremy Leipzig ♦ 18k • updated 8 months ago by swbarnes2 ♦ 7.0k
5
votes
1
answer
707
views
1
answer
'CDS' but not 'exon' in GFF
cds gff exon rna-seq written 11 months ago by NielQC • 10 • updated 10 months ago by tdmurphy • 170
1
vote
1
answer
339
views
1
answer
How to find CDS in Gene Profile?
cds cdna genbank written 11 months ago by sagar • 0 • updated 11 months ago by genomax ♦ 74k
96
votes
5
answers
134k
views
40 follow
5
answers
What'S The Difference Between Cds And Orf?
cds orf written 7.4 years ago by shiy05 • 290 • updated 11 months ago by jazzyl5660 • 10
1
vote
1
answer
1.4k
views
1
answer
determining length of fasta cds and protein sequences
software cds protein fasta written 4.8 years ago by vigneshprbh37 • 30 • updated 11 months ago by Biostar ♦♦ 20
0
votes
0
answers
317
views
0
answers
Get CDS from consensus genome assembly
cds consensus_sequence proteins written 14 months ago by yoce_pf • 40
2
votes
1
answer
489
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5 follow
1
answer
Merging position of all different CDS of a single gene in one line
cds gff gene duplication written 14 months ago by 1234anjalianjali1234 • 30 • updated 14 months ago by rjactonspsfcf • 90
6
votes
1
answer
915
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5 follow
1
answer
Calculate CDS phase in gff3 format
genome feature format cds gff phase written 14 months ago by marongiu.luigi • 420 • updated 14 months ago by Carambakaracho • 1.9k
0
votes
1
answer
895
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1
answer
One to one ortholog detection by RBH blast (Reciprocal best hit)
genome cds ortholog rbh blast written 15 months ago by madapada • 0
6
votes
1
answer
829
views
1
answer
CDS sequence from mRNA and protein sequence
fasta cds protein code mrna written 16 months ago by Macspider • 3.0k • updated 16 months ago by lieven.sterck ♦ 6.2k
2
votes
0
answers
831
views
0
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How to recompute coding sequences from a psl format ?
genome alignment sequence gmap cds written 2.1 years ago by Thomas B. • 10 • updated 17 months ago by Biostar ♦♦ 20
2
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0
answers
665
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0
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CDS prediction for newly assembled transcripts
assembly transcriptome rna-seq cds written 18 months ago by I0110 • 120
2
votes
1
answer
902
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1
answer
getting feature annotations for all NCBI Refseq sequences
ncbi annotation refseq cds written 18 months ago by bitpir • 140 • updated 18 months ago by genomax ♦ 74k
0
votes
0
answers
500
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0
answers
best CDS prediction tool for online annotation submission
fasta annotation ghostkoala prodigal cds written 19 months ago by willnotburn • 40
0
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0
answers
710
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0
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Reference annotation file contains only transcript and CDS information, how to analyze the different expression of genes?
cds exon rna-seq written 24 months ago by zoukai3412085 • 0
0
votes
0
answers
551
views
0
answers
get CDS cordinates for genes, excluding UTR
gene cds written 24 months ago by J.F.Jiang • 760
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