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4
votes
1
answer
123
views
1
answer
Can Animal protein has different domain from the same protein in different translation frames?
cds translation protein orf frame written 27 days ago by javiersg • 0
1
vote
1
answer
117
views
1
answer
Mapping aligned reads to UTRs
cds alignment utr rna-seq written 28 days ago by jpcchoy • 0 • updated 28 days ago by Ace • 40
2
votes
0
answers
120
views
0
answers
Bulk Download all CDS and UTRs of known genes from ENSEMBL
cds utr ensembl written 7 weeks ago by Aishwarya Kulkarni • 60 • updated 7 weeks ago by ATpoint ♦ 19k
2
votes
0
answers
141
views
0
answers
Amino acid sequence from CDS information of gff file
cds gff amino acid written 8 weeks ago by doubleA • 0
4
votes
2
answers
163
views
2
answers
Getting proteins from genomic interval of a genbank file
cds proteins genbank biopython written 10 weeks ago by fhsantanna • 440 • updated 10 weeks ago by jrj.healey ♦ 13k
2
votes
3
answers
2.6k
views
3
answers
Entrez direct E-utilities - "efetch" command to retrieve CDS with protein accessions does not work
entrez direct e-utilities cds efetch retrieve written 2.8 years ago by al-ash • 100 • updated 3 months ago by Biostar ♦♦ 20
10
votes
2
answers
269
views
5 follow
2
answers
Why are the sum of all exons so much longer than CDS?
cds exons written 4 months ago by Jeremy Leipzig ♦ 18k • updated 4 months ago by swbarnes2 ♦ 6.0k
5
votes
1
answer
509
views
1
answer
'CDS' but not 'exon' in GFF
cds gff exon rna-seq written 7 months ago by NielQC • 10 • updated 6 months ago by tdmurphy • 160
1
vote
1
answer
268
views
1
answer
How to find CDS in Gene Profile?
cds cdna genbank written 7 months ago by sagar • 0 • updated 7 months ago by genomax ♦ 69k
92
votes
5
answers
129k
views
39 follow
5
answers
What'S The Difference Between Cds And Orf?
cds orf written 7.1 years ago by shiy05 • 280 • updated 7 months ago by jazzyl5660 • 10
1
vote
1
answer
1.4k
views
1
answer
determining length of fasta cds and protein sequences
software cds protein fasta written 4.4 years ago by vigneshprbh37 • 20 • updated 7 months ago by Biostar ♦♦ 20
0
votes
0
answers
251
views
0
answers
Get CDS from consensus genome assembly
cds consensus_sequence proteins written 10 months ago by yoce_pf • 40
2
votes
1
answer
403
views
5 follow
1
answer
Merging position of all different CDS of a single gene in one line
cds gff gene duplication written 10 months ago by 1234anjalianjali1234 • 30 • updated 10 months ago by rjactonspsfcf • 90
6
votes
1
answer
666
views
5 follow
1
answer
Calculate CDS phase in gff3 format
genome feature format cds gff phase written 10 months ago by marongiu.luigi • 380 • updated 10 months ago by Carambakaracho • 1.4k
0
votes
1
answer
638
views
1
answer
One to one ortholog detection by RBH blast (Reciprocal best hit)
genome cds ortholog rbh blast written 11 months ago by madapada • 0
6
votes
1
answer
646
views
1
answer
CDS sequence from mRNA and protein sequence
fasta cds protein code mrna written 12 months ago by Macspider • 2.8k • updated 12 months ago by lieven.sterck ♦ 5.5k
2
votes
0
answers
733
views
0
answers
How to recompute coding sequences from a psl format ?
genome alignment sequence gmap cds written 21 months ago by Thomas B. • 10 • updated 13 months ago by Biostar ♦♦ 20
2
votes
0
answers
540
views
0
answers
CDS prediction for newly assembled transcripts
assembly transcriptome rna-seq cds written 13 months ago by I0110 • 120
2
votes
1
answer
727
views
1
answer
getting feature annotations for all NCBI Refseq sequences
ncbi annotation refseq cds written 14 months ago by bitpir • 130 • updated 14 months ago by genomax ♦ 69k
0
votes
0
answers
410
views
0
answers
best CDS prediction tool for online annotation submission
fasta annotation ghostkoala prodigal cds written 15 months ago by willnotburn • 40
0
votes
0
answers
611
views
0
answers
Reference annotation file contains only transcript and CDS information, how to analyze the different expression of genes?
cds exon rna-seq written 20 months ago by zoukai3412085 • 0
0
votes
0
answers
502
views
0
answers
get CDS cordinates for genes, excluding UTR
gene cds written 20 months ago by J.F.Jiang • 750
0
votes
1
answer
1.1k
views
1
answer
Program that will extract all CDS from protein-coding genes in a genome fasta file (with gff file)
genome gene cds written 21 months ago by molly77 • 10 • updated 21 months ago by Kevin Blighe ♦ 45k
3
votes
2
answers
928
views
2
answers
CDS FASTA file as Reference sequence for Ion Torrent
fasta cds .bed next-gen reference written 21 months ago by serenabivona • 10
1
vote
0
answers
862
views
0
answers
how to construct CDS by using annotation file (coordinates) properly ???
cds 1-based coorinates 0-based bam file written 22 months ago by adeena_hassan • 40
4
votes
1
answer
860
views
1
answer
Ensembl API, command-line argument
ensembl api python bash cds written 22 months ago by oars • 150 • updated 22 months ago by Alex Reynolds ♦ 28k
0
votes
1
answer
2.0k
views
1
answer
How To Add Partial Cds Seqfeature In Biopython?
cds biopython python written 6.1 years ago by Leszek ♦ 4.0k • updated 22 months ago by Biostar ♦♦ 20
7
votes
2
answers
854
views
7 follow
2
answers
Locating longest gene, CDS in Ensembl GTF
gtf ensembl longest gene cds written 23 months ago by oars • 150
1
vote
1
answer
1.1k
views
1
answer
get gene annotation for nucleotide sequence of the NCBI RefSeq database
gene ncbi annotation cds dna written 2.0 years ago by dabid • 0
2
votes
1
answer
866
views
1
answer
GTF file: CDS feature is exon 1, but has frame = 1 or 2
gtf cds exon written 2.1 years ago by Marvin • 150 • updated 2.1 years ago by Devon Ryan ♦ 91k
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