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<prev • 81 results • page 1 of 3 • next >
0
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87
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1
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GTF file: CDS feature is exon 1, but has frame = 1 or 2
gtf cds exon written 6 days ago by Marvin • 90 • updated 6 days ago by Devon Ryan ♦ 68k
1
vote
2
answers
1.3k
views
2
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Retrieving CDS sequences NCBI
ncbi cds batch entrez fasta written 2.1 years ago by vigneshprbh37 • 10 • updated 16 days ago by Biostar ♦♦ 20
2
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1
answer
141
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5 follow
1
answer
DNA sequences trimming methods
cds trimming sequence dna written 21 days ago by Lucas Souza • 40
0
votes
1
answer
99
views
1
answer
Extract CDS from an extracted gene without bioperl
cds tool written 28 days ago by adeenahassan77 • 0 • updated 27 days ago by Ben • 40
0
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0
answers
156
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0
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How to map exon data to CDS from one reference species?
exome cds exon protein mapping written 10 weeks ago by balasink • 0 • updated 5 weeks ago by Biostar ♦♦ 20
7
votes
1
answer
215
views
1
answer
Convert fasta to bed (no gtf available)
genome ensembl bed cds fasta written 8 weeks ago by bioinfo8 • 70
7
votes
1
answer
200
views
1
answer
Convert cds .fa to bed
fasta ensembl bed cds ucsc written 9 weeks ago by bioinfo8 • 70
2
votes
1
answer
111
views
1
answer
genome features and sequence parsing
genome cds sequence parsing written 9 weeks ago by lessismore • 20 • updated 9 weeks ago by Macspider • 1.2k
2
votes
2
answers
176
views
5 follow
2
answers
How to identify the contigs for each predicted cds sequences?
genome augustus output contigs cds written 10 weeks ago by mirza • 70 • updated 10 weeks ago by jrj.healey • 1.6k
3
votes
4
answers
2.1k
views
6 follow
4
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How To Get The Coding Sequences (Cds) Based On The Protein Aminoacid Sequence
cds written 4.0 years ago by harrymao20 • 0 • updated 3 months ago by nachoes • 40
1
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0
answers
248
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0
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One sequence with multiple CDS start and end annotation with BioMart Browser
ensembl biomart cdna cds written 6 months ago by david.a.mancilla • 0 • updated 6 months ago by WouterDeCoster ♦ 19k
2
votes
2
answers
296
views
2
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Retrieval of chromosomal coordinates of coding sequences (CDS)
genome gene cds written 6 months ago by shakeelbiochemist • 0
2
votes
1
answer
243
views
1
answer
Find gene on genome from cds
genome cds written 7 months ago by guillaume.rbt • 280
4
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0
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368
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0
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Does having ORF shows the coding potential of a transcript that showed no hit against NCBI nr ?
gene orf alignment blast cds written 7 months ago by Farbod • 2.9k
25
votes
6
answers
21k
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16 follow
6
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Extract Cds Fastas From A Gff Annotation + Reference Sequence
cds gff written 5.1 years ago by Federico Giorgi • 350 • updated 8 months ago by sutturka • 80
2
votes
2
answers
1.1k
views
2
answers
plotting exons, cds and transcript for a specific gene
gene cds exon transcripts plot written 2.2 years ago by m_punisher6 • 0 • updated 9 months ago by hgarza • 0
1
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0
answers
374
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0
answers
choice of reference for transcriptome assembly
assembly cdna rna-seq cds written 10 months ago by sjbasu • 0 • updated 9 months ago by Biostar ♦♦ 20
1
vote
2
answers
568
views
2
answers
Entrez direct E-utilities - "efetch" command to retrieve CDS with protein accessions does not work
entrez direct e-utilities cds efetch retrieve written 9 months ago by al-ash • 0 • updated 9 months ago by DCGenomics • 280
0
votes
1
answer
352
views
1
answer
Annotated files that contain the sequence of genes and CDSs?
ncbi cds sequences gene written 9 months ago by unksci • 150 • updated 9 months ago by igor • 4.3k
9
votes
1
answer
452
views
1
answer
should stop codon be counted as part of CDS
gtf cds stop codon written 10 months ago by -_- • 420 • updated 10 months ago by NAVANEETHAN.R • 0
3
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1
answer
341
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1
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Retrieve all predicted cds from NCBI
ncbi cds blast ensembl written 11 months ago by tlorin • 160
2
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1
answer
309
views
1
answer
CDS of Adenovirus Genes
ebi cds vrial gene adenovirus codon usage written 11 months ago by BioCOOL • 0 • updated 11 months ago by genomax ♦ 29k
0
votes
1
answer
410
views
1
answer
Is there a tool for counting the number of non-synonymous sites in a CDS
cds biomart dnds ensembl written 12 months ago by Max • 120 • updated 12 months ago by natasha.sernova • 2.4k
2
votes
1
answer
509
views
1
answer
OMA parameter error Message
parameter.drw cds oma multiple species written 13 months ago by chevivien • 60 • updated 13 months ago by adrian.altenhoff • 260
1
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2
answers
558
views
2
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Convert from Protein position to ENSEMBL Transcript's coding sequence position
cds protein exac uniprot ensembl written 13 months ago by rashmi.bangalore123 • 0 • updated 13 months ago by Emily_Ensembl ♦ 11k
0
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1
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455
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1
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ncRNAs with CDS in NCBI
ncbi cds ncrna written 15 months ago by pixelraquel • 0 • updated 15 months ago by H.Hasani • 560
2
votes
1
answer
649
views
1
answer
extract CDS sequence between two genomic positions
sequencing R coordinates bam cds written 16 months ago by morganeboone • 0 • updated 16 months ago by abascalfederico • 940
0
votes
1
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597
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1
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Repeat regions were contained in cds file (extracted from evm.out.gff3 by using Perl script)
genome cds repeats evm written 19 months ago by Ginsea Chen • 80 • updated 17 months ago by abascalfederico • 940
0
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2
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739
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2
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Remove overlapping features from a gtf file?
gtf overlap bedtools cds written 20 months ago by RoryC • 10
0
votes
1
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666
views
1
answer
stop codon identification
cds written 20 months ago by harpreetmanku04 • 10 • updated 20 months ago by Ibrahim Tanyalcin • 650
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