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<prev • 83 results • page 1 of 3 • next >
7
votes
2
answers
197
views
7 follow
2
answers
Locating longest gene, CDS in Ensembl GTF
gtf ensembl longest gene cds written 4 days ago by oars • 30
1
vote
1
answer
183
views
1
answer
get gene annotation for nucleotide sequence of the NCBI RefSeq database
gene ncbi annotation cds dna written 6 weeks ago by dabid • 0
2
votes
1
answer
158
views
1
answer
GTF file: CDS feature is exon 1, but has frame = 1 or 2
gtf cds exon written 8 weeks ago by Marvin • 90 • updated 8 weeks ago by Devon Ryan ♦ 70k
1
vote
2
answers
1.4k
views
2
answers
Retrieving CDS sequences NCBI
ncbi cds batch entrez fasta written 2.2 years ago by vigneshprbh37 • 10 • updated 9 weeks ago by Biostar ♦♦ 20
2
votes
1
answer
191
views
5 follow
1
answer
DNA sequences trimming methods
cds trimming sequence dna written 10 weeks ago by l.souza • 50
0
votes
1
answer
160
views
1
answer
Extract CDS from an extracted gene without bioperl
cds tool written 11 weeks ago by adeenahassan77 • 20 • updated 11 weeks ago by Ben • 50
0
votes
0
answers
193
views
0
answers
How to map exon data to CDS from one reference species?
exome cds exon protein mapping written 4 months ago by balasink • 10 • updated 3 months ago by Biostar ♦♦ 20
7
votes
1
answer
323
views
1
answer
Convert fasta to bed (no gtf available)
genome ensembl bed cds fasta written 3 months ago by bioinfo8 • 80
7
votes
1
answer
251
views
1
answer
Convert cds .fa to bed
fasta ensembl bed cds ucsc written 3 months ago by bioinfo8 • 80
2
votes
1
answer
146
views
1
answer
genome features and sequence parsing
genome cds sequence parsing written 3 months ago by lessismore • 60 • updated 3 months ago by Macspider • 1.2k
2
votes
2
answers
220
views
5 follow
2
answers
How to identify the contigs for each predicted cds sequences?
genome augustus output contigs cds written 4 months ago by mirza • 70 • updated 4 months ago by jrj.healey • 2.0k
3
votes
4
answers
2.2k
views
6 follow
4
answers
How To Get The Coding Sequences (Cds) Based On The Protein Aminoacid Sequence
cds written 4.2 years ago by harrymao20 • 0 • updated 5 months ago by nachoes • 40
1
vote
0
answers
290
views
0
answers
One sequence with multiple CDS start and end annotation with BioMart Browser
ensembl biomart cdna cds written 7 months ago by david.a.mancilla • 0 • updated 7 months ago by WouterDeCoster ♦ 20k
2
votes
2
answers
349
views
2
answers
Retrieval of chromosomal coordinates of coding sequences (CDS)
genome gene cds written 8 months ago by shakeelbiochemist • 0
2
votes
1
answer
273
views
1
answer
Find gene on genome from cds
genome cds written 9 months ago by guillaume.rbt • 290
4
votes
0
answers
413
views
0
answers
Does having ORF shows the coding potential of a transcript that showed no hit against NCBI nr ?
gene orf alignment blast cds written 9 months ago by Farbod • 3.0k
25
votes
6
answers
21k
views
16 follow
6
answers
Extract Cds Fastas From A Gff Annotation + Reference Sequence
cds gff written 5.2 years ago by Federico Giorgi • 350 • updated 10 months ago by sutturka • 80
2
votes
2
answers
1.2k
views
2
answers
plotting exons, cds and transcript for a specific gene
gene cds exon transcripts plot written 2.3 years ago by m_punisher6 • 0 • updated 10 months ago by hgarza • 0
1
vote
0
answers
416
views
0
answers
choice of reference for transcriptome assembly
assembly cdna rna-seq cds written 12 months ago by sjbasu • 0 • updated 11 months ago by Biostar ♦♦ 20
2
votes
2
answers
689
views
2
answers
Entrez direct E-utilities - "efetch" command to retrieve CDS with protein accessions does not work
entrez direct e-utilities cds efetch retrieve written 11 months ago by al-ash • 0 • updated 11 months ago by DCGenomics • 290
0
votes
1
answer
382
views
1
answer
Annotated files that contain the sequence of genes and CDSs?
ncbi cds sequences gene written 11 months ago by unksci • 150 • updated 11 months ago by igor • 4.4k
9
votes
1
answer
514
views
1
answer
should stop codon be counted as part of CDS
gtf cds stop codon written 12 months ago by -_- • 450 • updated 12 months ago by NAVANEETHAN.R • 0
3
votes
1
answer
378
views
1
answer
Retrieve all predicted cds from NCBI
ncbi cds blast ensembl written 12 months ago by tlorin • 170
2
votes
1
answer
336
views
1
answer
CDS of Adenovirus Genes
ebi cds vrial gene adenovirus codon usage written 13 months ago by BioCOOL • 0 • updated 13 months ago by genomax ♦ 32k
0
votes
1
answer
447
views
1
answer
Is there a tool for counting the number of non-synonymous sites in a CDS
cds biomart dnds ensembl written 13 months ago by Max • 130 • updated 13 months ago by natasha.sernova • 2.5k
2
votes
1
answer
563
views
1
answer
OMA parameter error Message
parameter.drw cds oma multiple species written 15 months ago by chevivien • 60 • updated 15 months ago by adrian.altenhoff • 300
1
vote
2
answers
603
views
2
answers
Convert from Protein position to ENSEMBL Transcript's coding sequence position
cds protein exac uniprot ensembl written 15 months ago by rashmi.bangalore123 • 0 • updated 15 months ago by Emily_Ensembl ♦ 12k
0
votes
1
answer
485
views
1
answer
ncRNAs with CDS in NCBI
ncbi cds ncrna written 16 months ago by pixelraquel • 0 • updated 16 months ago by H.Hasani • 580
2
votes
1
answer
689
views
1
answer
extract CDS sequence between two genomic positions
sequencing R coordinates bam cds written 18 months ago by morganeboone • 0 • updated 18 months ago by abascalfederico • 960
0
votes
1
answer
666
views
1
answer
Repeat regions were contained in cds file (extracted from evm.out.gff3 by using Perl script)
genome cds repeats evm written 21 months ago by Ginsea Chen • 90 • updated 19 months ago by abascalfederico • 960
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