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<prev • 126 results • page 1 of 5 • next >
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Is there a way to do a batch extraction of DNA Coding Sequences from List of Protein Accessions (NCBI)?
ncbi nuccore protein eutils cds written 1 day ago by biobaker • 0
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1
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103
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1
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Mapping of CDS sequence of genes using minimap2
minimap2 fasta mapping cds written 6 weeks ago by harisanjanas • 0 • updated 6 weeks ago by lieven.sterck ♦ 8.7k
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3
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3
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Entrez direct E-utilities - "efetch" command to retrieve CDS with protein accessions does not work
entrez direct e-utilities cds efetch retrieve written 4.1 years ago by al-ash • 140
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1
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114
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1
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Multi-records genbank to CDS
cds biopython genbank written 9 weeks ago by hazirliver • 10
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1
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167
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1
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From consensus sequence with variants to protein
vcf cds aligment blast ccds written 3 months ago by Maxime • 0
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210
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6 follow
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Getting coding sequence length
ncbi gene cds written 3 months ago by A • 3.9k
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103
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find NBCI transcript with longest coding sequence for a list of human genes
ncbi cds transcript written 3 months ago by User6891 • 280
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395
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5 follow
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How to extract CDS zones and list to an secondary text file. Perl
perl genome origin chromosome cds written 5 months ago by matache.razvan911 • 0 • updated 4 months ago by emi_14_ar • 0
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177
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ORFs finding tools
genome orf findorf getorf cds written 4 months ago by profnf11295 • 0
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6
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47 follow
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What'S The Difference Between Cds And Orf?
cds orf written 8.4 years ago by shiy05 • 320 • updated 6 months ago by ciro.santilli • 20
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2
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212
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Ensembl and Gene Prediction Tools output CDS' not divisible by 3
cds gff orf written 6 months ago by NickJD • 0 • updated 6 months ago by ATpoint ♦ 40k
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1
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459
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1
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Counting CDS's in Maker output
annotation gene prediction maker est cds written 7 months ago by mrmrwinter • 0 • updated 7 months ago by Juke34 • 4.8k
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2
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4.8k
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2
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Easy Way To Map Cds Coordinates To Genomic Coordinates
cds gff coordinates mapping bed written 9.6 years ago by Alper Yilmaz • 90 • updated 9 months ago by Shicheng Guo • 8.4k
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174
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How to get a sequence of Clone and do alignment?
gene cds clone written 9 months ago by isoBA • 0
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294
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1
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How to identify all exons and cds in gene?
gene cds exon dna written 9 months ago by isoBA • 0 • updated 9 months ago by Pierre Lindenbaum ♦ 131k
2
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2
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266
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2
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Getting CDS from chromosome positions
cds sequence chromosome position genome browser written 12 months ago by drmouradap • 0 • updated 10 months ago by Luis Nassar • 420
3
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2
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257
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7 follow
2
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Obtaining nucleotide sequences from a set of protein identifiers
sequence cds elink etools entrez written 11 months ago by hopf • 10 • updated 11 months ago by Chirag Parsania • 1.9k
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309
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5 follow
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How to calculate GC% at 1st, 2nd and 3rd codon position for each sequence in a multifasta
assembly 3rd codon position gc% cds written 11 months ago by forni.giobbe • 0 • updated 11 months ago by Joe ♦ 18k
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should stop codon be counted as part of CDS
gtf cds stop codon written 4.2 years ago by -_- • 860 • updated 11 months ago by Juke34 • 4.8k
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1.4k
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1
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GTF file: CDS feature is exon 1, but has frame = 1 or 2
gtf cds exon written 3.4 years ago by Marvin • 170 • updated 11 months ago by Biostar ♦♦ 20
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234
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Download multiple bacterial CDS from NCBI using Biopython
ncbi cds biopython written 12 months ago by lisssanka • 0
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1
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340
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1
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generating 'maximal' cds sequence from multiple isoforms of a gene
gene cds gff written 12 months ago by mforthman • 40 • updated 12 months ago by Brice Sarver • 3.5k
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407
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Which file should I use to retrieve CDs following the GenBank Assembly link? No RefSeq available.
ncbi assembly refseq gbff cds written 13 months ago by andrespara • 10
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2
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850
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2
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Extract every CDS sequences from a VCF file
vcf cds alignment written 13 months ago by maxime.policarpo • 110 • updated 13 months ago by Pierre Lindenbaum ♦ 131k
0
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1
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277
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1
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a CDS without gene_Id's can be annotated?
genome cds rna-seq written 14 months ago by m986 • 0 • updated 14 months ago by joe555 • 0
4
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2
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464
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CDS file (as reference) can be used for align my fastq files?
cds alignment rna-seq written 14 months ago by m986 • 0 • updated 14 months ago by swbarnes2 ♦ 8.9k
4
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1
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471
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1
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Can Animal protein has different domain from the same protein in different translation frames?
cds translation protein orf frame written 16 months ago by javiersg • 0
3
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1
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310
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1
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Mapping aligned reads to UTRs
cds alignment utr rna-seq written 16 months ago by jpcchoy • 0 • updated 16 months ago by Ace • 70
2
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398
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Bulk Download all CDS and UTRs of known genes from ENSEMBL
cds utr ensembl written 17 months ago by Aishwarya Kulkarni • 80 • updated 17 months ago by ATpoint ♦ 40k
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Amino acid sequence from CDS information of gff file
cds gff amino acid written 17 months ago by doubleA • 0
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