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Trimming reads of Chipseq samples
alignment chip-seq written 32 minutes ago by GK1610 • 30
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Combined Tss Plots For Chip Seq Peaks
chip-seq written 4.3 years ago by aditi.qamra • 230 • updated 11 hours ago by Biostar ♦♦ 20
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Mapping and annotating DNA binding regions from ChIP-Seq to nearby gene
annotation chip-seq written 1 day ago by oriolebaltimore • 60 • updated 12 hours ago by toralmanvar • 350
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Job: Job: Bioinformatics Analyst at the University of Virginia, Charlottesville, VA, USA
R chip-seq job rna-seq written 1 day ago by Stephen ♦ 2.6k • updated 1 day ago by genomax ♦ 49k
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Doubt using HOMER annotatePeaks.pl
homer macs2 chip-seq written 2 days ago by josruirod • 10 • updated 2 days ago by b.nota ♦ 4.0k
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The m6A-Seq analysis
chip-seq m6a-seq written 2 days ago by wangdp123 • 110
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have trouble to upload data to washU browser
sequence chip-seq written 2 days ago by mikysyc2016 • 10 • updated 2 days ago by jared.andrews07 • 730
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3
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704
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5 follow
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BagFoot TF foot printing
R bagfoot bagfootr chip-seq written 8 months ago by rbronste • 160 • updated 2 days ago by ucarduygu • 0
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Using RIPSeeker : RIPSeeker terminates with the "cannot allocate memory" error
chip-seq rip written 3 days ago by rew_27 • 0 • updated 3 days ago by finswimmer ♦ 2.8k
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5 follow
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Fastq file download from pubmed
chip-seq written 3 days ago by mikysyc2016 • 10 • updated 3 days ago by finswimmer ♦ 2.8k
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two way get analysis data to get the obvious range difference in IGV
peak range chip-seq igv written 3 days ago by mikysyc2016 • 10
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78
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1
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Batch and combining reads from two flow cells for the same ChIP/ATAC-seq library
illumina combine atac-seq chip-seq batch written 3 days ago by reskejak • 0 • updated 3 days ago by Devon Ryan ♦ 81k
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Tool: T-BioInfo - an intuitive interface for complex bioinformatics tasks
next-gen tool chip-seq snp alignment rna-seq written 3 days ago by elia.brodsky • 230
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51
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want to pick up the strongest peaks in all the duplicates
chip-seq written 3 days ago by mikysyc2016 • 10
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Normalize coverage to spike-in chromatin
normalization chip-seq written 4 days ago by goodez • 160
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ChIP-nexus peak call
chip-seq written 20 months ago by Sudhir Jadhao • 50 • updated 4 days ago by mlweilert • 0
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1
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96
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the bam file used for Diffbind
R chip-seq sequencing written 4 days ago by mikysyc2016 • 10 • updated 4 days ago by jared.andrews07 • 730
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1
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50
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1
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weird problem with summit.bed file from macs2
software error peak calling chip-seq sequencing written 5 days ago by mikysyc2016 • 10 • updated 4 days ago by jared.andrews07 • 730
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which tool I can use to defined varying-size, equal-coverage chromosomal windows
genome chip-seq sequencing written 10 weeks ago by weiyanjia2008 • 0 • updated 5 days ago by Biostar ♦♦ 20
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question about DiffBind
R chip-seq written 5 days ago by mikysyc2016 • 10 • updated 5 days ago by zx8754 ♦ 4.5k
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DiffBind - normalization methods with biologically-relevant differences in signal-to-noise
normalization diffbind atac chip-seq signal written 6 days ago by reskejak • 0 • updated 6 days ago by Devon Ryan ♦ 81k
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HOMER parallel annotation for big .bed file
chip-seq written 6 days ago by franc.jian • 0
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99
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A question about Homer ChIP-seq analysis
chip-seq written 7 days ago by mikysyc2016 • 10
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91
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what is "pileup lane" means in peak excel file by macs2
chip-seq written 8 days ago by mikysyc2016 • 10
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60
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tag count and fold enrichment
chip-seq written 8 days ago by mikysyc2016 • 10 • updated 8 days ago by ATpoint • 4.4k
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59
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Small dispersion values in differential expression analysis
chip-seq rna-seq sequencing written 8 days ago by xd_d • 90
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no exact read?
R alignment chip-seq bwa bowtie2 written 9 days ago by star • 60
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Does IDR (irreproducible discovery rate) higher mean less 'reproducible' or vice versa?
idr chip-seq written 5 months ago by sckinta • 420 • updated 9 days ago by goodez • 160
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How to run RATT (Rapid Annotation Tool)
software error chip-seq rna-seq sequencing written 9 days ago by kaurjaimeet911 • 10 • updated 9 days ago by WouterDeCoster ♦ 29k
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use Homer to annotation region of ChIP-seq peaks.
chip-seq written 9 days ago by mikysyc2016 • 10 • updated 9 days ago by b.nota ♦ 4.0k
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