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<prev • 2,236 results • page 1 of 75 • next >
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Retrieving count averages from a binding matrix
diffbind deseq2 chip-seq written 20 hours ago by rbronste • 290
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61
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1
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Looking for advise on histone modification chip-seq analysis - 2 conditions
chip-seq written 1 day ago by mariana1988 • 0 • updated 1 day ago by ATpoint ♦ 25k
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How to find upregulated and downregulated genes for my microarray data with limma
R next-gen chip-seq microarray rna-seq written 2 days ago by koushik.vf09 • 10 • updated 2 days ago by Kevin Blighe ♦ 51k
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87
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GC bias correction for Chip-SEQ
gc chip-seq ngs written 10 days ago by Farron16 • 10 • updated 2 days ago by ATpoint ♦ 25k
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9 follow
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Tool: Automatic IGV snapshot script
tutorial chip-seq tool igv written 2.7 years ago by steve • 2.4k • updated 4 days ago by danielaperry2015 • 0
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To create a GDS file from bed, bim and fan file.
chip-seq written 3.7 years ago by Maneesh.Misra • 0 • updated 4 days ago by Biostar ♦♦ 20
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116
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[diffbind] error when running dba.count
R chip-seq written 11 days ago by Kathy • 0
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3
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8 follow
3
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Chip-Seq Data Analysis, Newbie To Do Steps
analysis chip-seq written 8.4 years ago by Patrick • 40 • updated 7 days ago by Biostar ♦♦ 20
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I am trying to get the promoters of a set of differentially expressed genes
chip-seq rna-seq written 8 days ago by Fawzi Yassine • 10
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deeptools bamcoverage and bamcompare tss plot
chip-seq written 9 days ago by zeeshan.fazal1986 • 0
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61
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1
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unit scale in plotprofile plot - deeptools2
chip-seq deeptools2 written 9 days ago by sim.j.baum • 50 • updated 9 days ago by Devon Ryan ♦ 92k
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2
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84
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2
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Chip-Seq macs2 peak calling
ngs macs2 chip-seq written 10 days ago by Molinia • 0 • updated 10 days ago by jared.andrews07 • 3.9k
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1
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86
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1
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Why is the pValue peaks very high in EpigenomeRoadMap data.
chip-seq written 10 days ago by Fawzi Yassine • 10 • updated 10 days ago by colin.kern • 690
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bowtie2 -all ... multiple alignment Chip-seq
multiple alignment bowtie2 alignment chip-seq written 10 days ago by poltora4enko • 0
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139
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1
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macs2 call peak
chip-seq written 5 weeks ago by yiren • 0 • updated 10 days ago by ben.kunfang • 10
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63
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1
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What aligners to choose between Hisat2 and BWA for chip-SEQ analysis
alignment next-gen chip-seq written 10 days ago by Molinia • 0 • updated 10 days ago by ATpoint ♦ 25k
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1
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83
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1
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Heterogeneity from bulk ChIP-seq or ATAC-seq data
heterogeneity chip-seq atac-seq clustering written 11 days ago by msimmer92 • 210 • updated 11 days ago by jared.andrews07 • 3.9k
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3
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107
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6 follow
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Different number of peaks between biological replicates?
replicates chip-seq sequencing written 17 days ago by rohitsatyam102 • 60 • updated 13 days ago by colin.kern • 690
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120
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MACS2 "total fragments in treatment" gives less number of fragments than expected
genome next-gen chip-seq written 14 days ago by rohitsatyam102 • 60
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97
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1
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how to compare the difference of read counts in a given region
chip-seq written 16 days ago by hubenxia123 • 0 • updated 16 days ago by seidel ♦ 6.8k
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108
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Pysam error trying to uplift bam/sam file coordinates between reference and alt genome.
software error next-gen chip-seq sequencing written 23 days ago by thomashartwig80 • 0
3
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1
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174
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1
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Which one to use for ChipSeq replicate comparison: Spearman or Pearson
replicates chip-seq correlation genome written 21 days ago by rohitsatyam102 • 60 • updated 20 days ago by colin.kern • 690
3
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1
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181
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5 follow
1
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Chip-seq best practice data analysis
chip-seq written 22 days ago by elb • 170 • updated 21 days ago by ATpoint ♦ 25k
2
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1
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107
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1
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Visualizing bigwig tracks
chip-seq rna-seq written 24 days ago by fr • 110 • updated 23 days ago by colin.kern • 690
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175
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Forum: What are chromatin states ?
genome forum chip-seq written 26 days ago by rohitsatyam102 • 60
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2
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127
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2
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DiffBind without replicates
R diffbind chip-seq written 25 days ago by zhangdengwei • 40
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229
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Job: Computational biologist / Bioinformatician I & II at University of Texas Southwestern Medical Center at Dallas
chip-seq job snp sequencing R rna-seq written 27 days ago by chao.xing • 20
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127
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1
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coverage of narrow peaks on genomic region using bedtools
chip-seq written 27 days ago by rthapa • 0 • updated 27 days ago by Brice Sarver • 3.2k
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segmentation of Chip-exo DATA
chip-seq written 28 days ago by elb • 170 • updated 28 days ago by genomax ♦ 74k
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99
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How to remove Mate mapped to a different chromosome
#samtools alignment next-gen chip-seq written 28 days ago by rohitsatyam102 • 60
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