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fastqc of chipseq dataset - two peaks in GC content
gc content peaks chip-seq fastqc written 29 days ago by Assa Yeroslaviz • 1.2k • updated 5 hours ago by Biostar ♦♦ 20
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768
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Convert DiffBind output to standard BED or NarrowPeak format
bed diffbind chip-seq narrowpeak written 19 months ago by rbronste • 230 • updated 21 hours ago by corinne_hutfilz • 0
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2
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62
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ChIP-seq Peak Calling/File Format
epigenome encode chip-seq roadmap written 1 day ago by lkalesin • 0 • updated 1 day ago by Friederike ♦ 3.6k
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hicexplorer hicPlotTADs configuration file
chip-seq written 4 weeks ago by dimitrischat • 60 • updated 1 day ago by Biostar ♦♦ 20
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Specific Antibodies for ChiP-Seq assay
chip-seq written 2 days ago by morteza.khabiri • 20
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43
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Cis element analysis and coexpression analysis
gene chip-seq sequencing written 3 days ago by ananyakumari57 • 0
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117
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Job: Data science research assistant position at Johns Hopkins
imaging chip-seq job brain R rna-seq written 4 days ago by sawa.studies • 0
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1
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120
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1
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Batch download of bed files for all transcription factors associated with a cell type
chip-seq transcription factors cell-type specific written 6 days ago by User 7754 • 230 • updated 6 days ago by ATpoint ♦ 15k
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1
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777
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1
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Can EPIC call peaks on files without control?
epic chip-seq peak-calling sicer written 2.4 years ago by ariel.balter • 140 • updated 6 days ago by endrebak • 740
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Current status of EPIC peak caller
epic peak calling chip-seq written 2.5 years ago by ariel.balter • 140 • updated 6 days ago by endrebak • 740
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Create bigwigs in python?
chip-seq written 2.5 years ago by endrebak • 740
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60
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Mapping chromosome/start positions to Illumina CpG ids
epigenetics id chip-seq bisulfite written 9 days ago by ap3637 • 0
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1
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101
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1
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Overlap in Peaks of ChIP data for 2 TFs
chip-seq written 10 days ago by yugen30 • 10 • updated 9 days ago by Prakash • 920
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449
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MACS2 --SPMR and --nolambda usage for version 2.1.2
macs2 chip-seq written 5 months ago by varunorama • 0 • updated 10 days ago by nanoide • 30
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1
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5 follow
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How can I find the promoter regions that have H3k27me3 in two different groups
chip-seq written 10 days ago by munaj86 • 0 • updated 10 days ago by Prakash • 920
1
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1
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Is it possible to control the coordinate of the peak that HOMER takes into account to annotate?
macs2 homer peaks chip-seq annotation written 11 days ago by nanoide • 30 • updated 10 days ago by jared.andrews07 • 2.2k
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111
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Discrepancy in HOMER output
motif_finding chip-seq homer written 12 days ago by doan.dinh • 0
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144
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Forum: Poorly designed "omics" experiment
forum next-gen chip-seq rna-seq written 13 days ago by Baby Bioinformatician • 20
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154
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Job: Bioinformatician / Data Manager Position Open - Mount Sinai, New York
chip-seq pipeline atac-seq rna-seq job written 13 days ago by jaroslav.bendl • 10
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[ChIP-seq. signal plot] How to align the based line of different samples?
deeptools chip-seq normalization written 15 months ago by chiefcat • 90 • updated 14 days ago by Biostar ♦♦ 20
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to check allelic biases in histone peaks
chip-seq snp written 15 days ago by GK1610 • 60
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119
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1
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Can't locate Bowtie2 index files
bowtie2 alignment chip-seq written 19 days ago by kdc15 • 30 • updated 17 days ago by flogin • 50
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1
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247
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1
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News: Genomic bioinformatics service provider
next-gen genome news chip-seq sequencing rna-seq written 5 months ago by Neha • 0 • updated 17 days ago by bkl • 20
1
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137
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NGS Plot Heatmap Colors
ngs.plot.r colors ngs chip-seq heatmap written 17 days ago by cemil.a.kerimoglu • 0
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1
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133
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1
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ngsplot heatmap scale discrepancy
chip-seq written 17 days ago by Sadia • 40
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106
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Which parameter can be used to set up cutoff not to call peaks <150bp for the macs2 broad peak calling
macs2 chip-seq written 19 days ago by lhaiyan3 • 30 • updated 18 days ago by ATpoint ♦ 15k
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4
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6 follow
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I need to download a list of all human genes with their respective Ensembl gene name | transcription start site ..
gene chip-seq written 4.6 years ago by cherifbenhamda • 10 • updated 18 days ago by Biostar ♦♦ 20
2
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288
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How to customize the looks of dynamically generated tracks in jbrowse?
chip-seq jbrowse written 8 months ago by kontra.levente • 60 • updated 20 days ago by Biostar ♦♦ 20
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ChIPSeeker Gene ID not matched error
chipseeker chip-seq written 22 days ago by Chenzhen Zhang • 0 • updated 21 days ago by ATpoint ♦ 15k
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Job: Hiring Bioinformatician in NGS epigenomics and machine learning @ New York City
chip-seq epigenomics machine learning rna-seq job written 21 days ago by shenli.sam • 190
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