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Consensus motif of closely related TFs
motif pwm sequence chip-seq transcription factor written 1 hour ago by rbronste • 170 • updated 1 hour ago by goodez • 260
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40
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question about calling peak by macs2
chip-seq written 2 hours ago by ch8316f5eyu • 0
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57
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Extracting gene ID of overlapping peaks between different Chip-seqs
R chip-seq written 11 hours ago by dthaper • 0 • updated 10 hours ago by zx8754 ♦ 5.0k
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unable to access encode
encode chip-seq written 1 day ago by Young • 0 • updated 1 day ago by benformatics • 270
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1
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112
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5 follow
1
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Macs called peaks shorter than 1kb
chip-seq written 3 days ago by dcheng1 • 0 • updated 3 days ago by benformatics • 270
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Downloading CHIP-seq bed files for ENCODE Histone modification data
encode chip-seq histone modifers written 2.6 years ago by morovatunc • 380 • updated 6 days ago by Ram ♦ 17k
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2
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1.2k
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2
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ValueError: invalid literal for int() with base 10: 'start' computeMatrix of deeptools
deeptools chip-seq written 15 months ago by salamandra • 170 • updated 6 days ago by Ram ♦ 17k
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3
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1.1k
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7 follow
3
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BagFoot TF foot printing
R bagfoot bagfootr chip-seq written 11 months ago by rbronste • 170 • updated 8 days ago by Ashley Stephen Doane • 10
2
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1
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152
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1
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Motif location for enriched motif in HOMER
next-gen chip-seq written 24 days ago by prakash • 480 • updated 10 days ago by genomax ♦ 55k
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2
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Conversion Of Bar To Wig Format
wiggle chip-seq written 8.2 years ago by Ian ♦ 5.2k • updated 11 days ago by Ram ♦ 17k
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2
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5 follow
2
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How To Process Large Chipseq Data?
chip-seq written 8.3 years ago by nikulina • 280 • updated 11 days ago by Ram ♦ 17k
6
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1
answer
135
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5 follow
1
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Merging Peaks from macs2
chip-seq written 15 days ago by dimitrischat • 50 • updated 13 days ago by Ram ♦ 17k
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129
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News: Webinar: ChIP-Seq / ATAC-Seq Analysis and Integration with Gene Expression Data
news webinar chip-seq rna-seq written 14 days ago by kgosche • 0
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106
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FIMO output that preserves padj values
fimo meme deseq2 chip-seq motifs written 14 days ago by rbronste • 170
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119
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Converting .bowtie files to .sam
alignment chip-seq sam bowtie sequencing written 15 days ago by mmitra • 30
3
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1
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85
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1
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Using Diffbind R-studio
chip-seq written 15 days ago by dimitrischat • 50 • updated 15 days ago by Devon Ryan ♦ 84k
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103
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Macs2: predicted fragment length less than 2*tag length
macs2 chip-seq tagsize written 15 days ago by langya • 20
3
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1
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138
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1
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MACS2: Albeit outdir definition, my output goes to folder of input
macs2 chip-seq written 17 days ago by gdeniz • 0
6
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4
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311
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5 follow
4
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obtaining unique peaks in DiffBind
diffbind chip-seq differential written 9 weeks ago by Illinu • 90
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Tool: pytfmpval: Efficient, accurate p-value computation for position weight matrices
pwm tool p-value python chip-seq motifs written 20 days ago by jared.andrews07 • 1.3k
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1
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Error: Encountered internal Bowtie 2 exception (#1) (ERR): bowtie2-align exited with value 1
chip-seq written 15 months ago by salamandra • 170 • updated 21 days ago by 815435542 • 0
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1
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131
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1
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shift direction in ATAC/DNase data?
macs2 chip-seq atac-seq dnase-seq written 23 days ago by star • 60
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120
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News: Short Term Bioinformatics Online & Offline Training Program
news chip-seq snp R rna-seq gene written 24 days ago by info.arraygen • 0 • updated 24 days ago by h.mon ♦ 19k
11
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478
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8 follow
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Tool: Introducing Skymap: Allelic read counts extracted from 250,000 human sequencing runs in Sequence Read Archive
chip-seq snp rna-seq tool written 5 weeks ago by btsui • 260
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373
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Job: Bioinformatician in NIH (Bethesda, Maryland, USA)
next-gen chip-seq job rna-seq written 28 days ago by shouguog • 0
1
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1
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172
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1
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How to get strand information in the bed file of macs1.4 peak calling output?
next-gen chip-seq written 28 days ago by harikrishnanc903 • 0
4
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190
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Can be merged biological replicates?
chip-seq macs2 peak-calling atac-seq rna-seq written 4 weeks ago by star • 60
2
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179
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How to do differential peak analysis after scaling BAM files
chip-seq written 4 weeks ago by xiaoyonf • 10
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97
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0
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How to set 1Kb resolution for Hi-C Juicebox Visualization
next-gen chip-seq written 4 weeks ago by harikrishnanc903 • 0
2
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1
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129
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1
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why is there still duplication after extracting aligned read exactly 1 time?
duplicate alignment chip-seq samtools rna-seq written 4 weeks ago by star • 60 • updated 4 weeks ago by ATpoint ♦ 7.5k
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