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Ideas about what can I do with the raw data of gene expression and miRNA of Genechip Affymetrix?
R chip-seq rna-seq written 7 hours ago by agrandiadil • 0
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SICER fails to run
fail to produce files sicer chip-seq bash written 2 days ago by ildem • 10
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chipseq, how to create the density plot with real length of gene
chip-seq written 4 days ago by maryamforoozani16 • 0 • updated 1 day ago by ghostforever.shi • 10
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how to process spike-in with bamCoverage and plotHeatmap (with deeptools)
deeptools spike chip-seq normalization written 4 months ago by alessandro.pastore • 30
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ATAC seq specific region extraction
chip-seq written 2 days ago by krushnach80 • 160 • updated 2 days ago by Devon Ryan ♦ 70k
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Peak calling macs vs Homer
chip-seq written 6 days ago by saurabh.j.pradhan • 0
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extract the number of reads around TSS
chip-seq written 6 days ago by Ben • 50 • updated 6 days ago by Alex Reynolds ♦ 20k
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How Can I Verify If My Chip-Seq Control/Input Data Is Enough Covered By Sequencing Tags?
software chip-seq written 5.3 years ago by Luke • 220 • updated 6 days ago by Biostar ♦♦ 20
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Forum: How to identify your analytic data is true?
forum next-gen chip-seq rna-seq sequencing written 7 days ago by Hughie • 30 • updated 7 days ago by genomax ♦ 32k
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Tool: fastheatmap: super high performance interactive heatmap software
chip-seq tool rna-seq written 7 days ago by Bohdan Khomtchouk • 300 • updated 7 days ago by Michael Dondrup ♦ 42k
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News: T-BioInfo Platform and Bioinformatics Courses Beta Test
analysis genome tutorial chip-seq rna-seq news written 9 days ago by Pine Biotech • 20
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Tool: Transcription Factor Binding Sites, Motifs and Profiles from ~10200 ChIP-seq and TCGA Pan-Cancer data
transcription factor lncrna chip-seq tool mirna written 10 months ago by lsp03yjh • 450
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MACS2 , pvalue
sequence chip-seq written 11 days ago by xd_d • 60 • updated 10 days ago by Chris Fields • 1.7k
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Evaluating an RNA-Seq/ChIP-Seq Scientific finding
next-gen chip-seq rna-seq written 11 days ago by benjyrolls • 70 • updated 11 days ago by Devon Ryan ♦ 70k
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Beginner Help with Microarray Analysis
R chip-seq written 11 days ago by tareagan • 0
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News: Short Term Industrial Bioinformatics Training for life sciences
next-gen genome news chip-seq R rna-seq written 11 days ago by Seema • 0 • updated 11 days ago by WouterDeCoster ♦ 20k
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where do i download gff3 file for whole human exons for tuxedo protocol (ngs rnaseq analysis)
gene genome chip-seq rna-seq assembly written 12 days ago by rahulraghavantv • 0 • updated 12 days ago by geek_y ♦ 7.7k
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Comparing open chromatin data to ChromHMM model
chromhmm chip-seq atac-seq written 7 weeks ago by rbronste • 140 • updated 13 days ago by Biostar ♦♦ 20
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Is ChIP-seq control file in peak calling must whole genome size??
macs sequence chip-seq tool written 13 days ago by dhehdqls • 0 • updated 13 days ago by geek_y ♦ 7.7k
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HOMER getDifferentialPeaksReplicates.pl (why negative tag count)
R next-gen chip-seq sequencing written 15 days ago by xiaofeiwang198266 • 10
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Could not find or load main class net.sf.picard.sam.SortSam
chip-seq rna-seq written 3 months ago by blur • 50 • updated 15 days ago by 346871663 • 0
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Forum: Any advanced and really structured course on Python language or MySql or R or Unix environment ?
forum chip-seq rna-seq sequencing written 2.9 years ago by ilmagodellepcr • 10 • updated 16 days ago by h.mon ♦ 8.0k
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Chip-Seq data description
chip-seq written 18 days ago by sacamanobob800 • 0
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Job: Computational Biology - Systems Biology - Bioinformatics - Statistics, University of California, San Diego, CA, USA
proteomics wgs chip-seq job rna-seq written 21 days ago by lilyak • 0 • updated 21 days ago by genomax ♦ 32k
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Job: Postdoctoral Research Associate - Computational Genomics, University of Virginia, Charlottesville, VA, USA
job chip-seq atac-seq genomics rna-seq written 21 days ago by clintm • 0
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From bed file to enrichment score
chip-seq written 22 days ago by GK1610 • 20
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A error occurred in the ngsplot analysis.
chip-seq written 6 weeks ago by ghostforever.shi • 10 • updated 22 days ago by Biostar ♦♦ 20
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unmapped reads by Tophat can be aligned by Bowtie2
bowtie2 tophat chip-seq written 23 days ago by zhangzhenyusz • 20 • updated 23 days ago by Alex Reynolds ♦ 20k
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News: PDX Models: Tumor-stroma interaction
R pdx chip-seq news transcriptome written 25 days ago by Pine Biotech • 20
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What is the recommended sequencing depth for ChIRP-seq?
sequencing chip-seq rna-seq lncrna written 23 days ago by prathyushakonda • 0
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