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Narrow & Broad peaks from 'macs2 bdgdiff'
macs2 next-gen chip-seq peakcalling sequencing written 1 day ago by anupriyaverma1408 • 100 • updated 1 day ago by jared.andrews07 • 90
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Job: Staff scientist (Biologist or Bioinformatician) in ERC-funded research group, University of Southern Denmark, Odense, Denmark
chip-seq rna job rna-seq transgenic mice written 1 day ago by kornfeldlab • 0 • updated 1 day ago by genomax ♦ 33k
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Tool for finding peaks from Chip-seq data at multiple regions.
peaks chip-seq tool written 2 days ago by sangram_keshari • 0
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Differential ChIP-seq with csaw: How to normalise counts on repetitive regions (telomers)?
csaw chip-seq written 4 days ago by gil.hornung • 50
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Job: Postdoc: Computational Biology - Systems Biology - Bioinformatics, University of California, San Diego, CA, USA
genome chip-seq job rna-seq sequencing written 3 days ago by lilyak • 0 • updated 3 days ago by genomax ♦ 33k
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Normalisation using Input DNA & calling peaks [Chip-seq]
normalization next-gen macs2 chip-seq written 3 days ago by anupriyaverma1408 • 100
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why I got different number of peaks used differnt version reference of hexaploid wheat analyzing the chip-seq data
genome alignment next-gen chip-seq written 14 days ago by ellahappy • 0 • updated 3 days ago by colindaven • 280
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how is obtained the BED score values (the 5th column of the bed files) in BED files
score chip-seq bed files written 8 months ago by fusion.slope • 120 • updated 4 days ago by augustin.le_bouquin • 0
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macs 1.4 (negative) peaks
macs chip-seq written 5 months ago by fabrizio.frasca • 0 • updated 4 days ago by Biostar ♦♦ 20
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Differential ChIP-seq analysis
chip-seq written 5 days ago by nvucic • 0 • updated 4 days ago by jared.andrews07 • 90
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Forum: [Please share] How do you keep your NGS data analysis methods/ strategies up to date? (e.g. Data sub-groupping, datasets overlapping, etc.)
ngs chip-seq forum rna-seq written 5 days ago by chiefcat • 70 • updated 5 days ago by Russ • 40
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Gene annotation from genomic features
annotation chip-seq rna-seq written 5 days ago by chiefcat • 70
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Job: [not available anymore] Junior bioinformatician (Bsc or Msc) - Dana Farber Cancer Institute, Boston, MA, USA
python chip-seq job R rna-seq linux written 7 months ago by rubendries • 10
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[Graph plotting] Correlation between gene expression & histone marks (Anyone know how to plot one/ the one like this figure?)
chip-seq rna-seq written 8 days ago by chiefcat • 70 • updated 8 days ago by Jean-Karim Heriche ♦ 13k
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Peak calling macs vs Homer
chip-seq written 6 weeks ago by saurabh.j.pradhan • 10 • updated 8 days ago by Kevin Blighe • 1.2k
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Empty output from MACS2 when using control
peak calling macs2 chip-seq written 20 months ago by lm687 • 40 • updated 8 days ago by macmath • 110
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6 follow
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ChIP-seq. analysis Tutorial for Dummies
dummy chip-seq written 8 days ago by chiefcat • 70 • updated 8 days ago by Gildas Le Corguillé • 10
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Visualize smooth ChIP peaks with Homer makeUCSCfile
homer chip-seq ucsc written 3 months ago by varsha619 • 20 • updated 8 days ago by macmath • 110
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Chip seq control library prep?
sequencing alignment chip-seq aquas written 9 days ago by Boboboe • 0 • updated 8 days ago by Kevin Blighe • 1.2k
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Eliminating repetetive motifs found by MEME
motif meme chip-seq written 9 days ago by rbronste • 140 • updated 9 days ago by Alex Reynolds ♦ 20k
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Tools for investigating the correlation of differential gene expression & histone marks/ TF binding?
chip-seq integration rna-seq written 9 days ago by chiefcat • 70 • updated 9 days ago by amy.bashir • 50
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awesome cancer genomics
chip-seq rna-seq written 9 days ago by Pappu • 1.8k • updated 9 days ago by Kevin Blighe • 1.2k
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6 follow
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Basic methods in ngs analysis
chip-seq rna-seq written 11 days ago by Pappu • 1.8k
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MEME motif width
chip-seq meme motif written 10 days ago by rbronste • 140
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annotatePeaks.pl Homer using "RNA"
homer chip-seq motif written 10 days ago by reubenmcgregor88 • 30 • updated 10 days ago by genomax ♦ 33k
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Identifying peaks of similar enrichment from ChIP-seq?
next-gen chip-seq atac-seq written 12 days ago by umbch • 0 • updated 12 days ago by jared.andrews07 • 90
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News: Reproducible Bioinformatics Project
next-gen genome news chip-seq R rna-seq written 12 days ago by raffaele.calogero • 0
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Motif database of choice
motif rsat chip-seq written 15 days ago by rbronste • 140 • updated 15 days ago by jared.andrews07 • 90
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Enhancer distance cutoff
enhancer chip-seq written 17 days ago by sysbiocoder • 170 • updated 16 days ago by kristoffer.vittingseerup • 250
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genome-wide gene occupancy profiles
bedgraph chip-seq occupany profile written 17 days ago by Assa Yeroslaviz • 1.1k
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