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<prev • 2,035 results • page 1 of 68 • next >
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DiffBind: Error in `.rowNamesDF<-`(x, value = value) : invalid 'row.names' length
R diffbind chip-seq written 3 hours ago by msimmer92 • 150
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ChIP Seq out file description along with correlation between RNA and ChIp seq
chip-seq rna-seq written 12 hours ago by preranakoti93 • 0 • updated 7 hours ago by genomax ♦ 63k
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hicexplorer hicPlotTADs configuration file
chip-seq written 9 hours ago by dimitrischat • 60
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3
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6 follow
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Small dataset for data analysis in the own laptop
chip-seq rna-seq written 2 days ago by iibrams07 • 0 • updated 1 day ago by Istvan Albert ♦♦ 79k
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55
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Homer not finding any genomes?
homer chip-seq hic written 3 days ago by rf • 100
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1
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55
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1
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bamCompare the result if 0
deeptools chip-seq bamcompare written 3 days ago by HI • 0 • updated 3 days ago by Devon Ryan ♦ 88k
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HOMER findMotifsGenome.pl Local Optimisation Phase
de novo motif discovery homer chip-seq written 4 days ago by janepuh12 • 0
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100
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Bowtie 2 error?
bowtie2 chip-seq aligne written 7 days ago by star • 130
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1
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61
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1
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CUFFLINKS error: Warning: invalid start coordinate at line:
chip-seq written 7 days ago by westin.kosater • 10
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2
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147
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2
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the peaks of ChIPseq are few
next-gen chip-seq call peak written 9 days ago by Francis • 10 • updated 8 days ago by Friederike ♦ 3.2k
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100
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Roadmap epigenomics narrowPeak and broadPeak contain scores > 1000
chip-seq epigenomics written 9 days ago by F Lekschas • 10
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extract some feature from peak?
bedtools featurecount diffbind macs2 chip-seq written 11 days ago by star • 130
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1
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82
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1
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GC content from bam to fasta file
chip-seq written 12 days ago by GK1610 • 60
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Job: Senior Scientist in Bioinformatics Full-time REMOTE position
genome chip-seq job snp R rna-seq written 13 days ago by diana.reynon • 0
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No called peaks from macse 2 and the alignment rate 90%
macs2 chip-seq written 14 days ago by sahhomaha • 0 • updated 14 days ago by h.mon ♦ 24k
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90
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Aligment rate vs called peaks
chip-seq written 14 days ago by sahhomaha • 0 • updated 14 days ago by h.mon ♦ 24k
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1
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83
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1
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how to retrieve binding affinity matrix in diffbind
diffbind dba.count chip-seq written 22 days ago by hamaor • 0 • updated 15 days ago by iamjli • 10
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1
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67
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1
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R's DiffBind. Error in pv.DBAplotVolcano(DBA, contrast = contrast, method = method,: object 'sigSites' not found
R diffbind chip-seq written 17 days ago by msimmer92 • 150 • updated 17 days ago by Friederike ♦ 3.2k
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1
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CLIP-seq peak analysis
clip-seq peak calling chip-seq written 19 days ago by mb314 • 0 • updated 18 days ago by shawn.w.foley • 260
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176
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Unexpected hump in GC content distribution from FasQC report in ChIP-seq
quality chip-seq fastqc written 20 days ago by msimmer92 • 150
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Can F-seq appers the p-value for each peak in the output?
chip-seq atac-seq written 19 days ago by vw • 20
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1
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105
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Calculate ChIP-seq correlation in promoter regions
chip-seq sequencing written 20 days ago by dcheng1 • 0 • updated 20 days ago by Devon Ryan ♦ 88k
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107
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1
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How to compare different chipseq peak calling methods?
chip-seq written 20 days ago by jesvinjoy35 • 0 • updated 20 days ago by jared.andrews07 • 1.8k
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66
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Appear negative value while caculating Input-subtract signal for ChIP-Seq
chip-seq written 20 days ago by biofandd • 0
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1
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124
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1
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Error while annotating with Chipseeker
chip-seq diffbind chipseeker annotation written 21 days ago by hamaor • 0
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How to Caculate the input-subtract signal for a specific enhancer region
bioinformatics next-gen chip-seq sequencing written 20 days ago by biofandd • 0
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126
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1
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Upsampling BAMs, or downsampling
chip-seq written 21 days ago by HI • 0
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What's the meaning of column "score" of output bed file from F-seq
chip-seq atac-seq peakcalling written 21 days ago by vw • 20
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3
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728
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3
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Peak caller for broad peaks, replicates and paired-end reads
chip-seq written 2.9 years ago by Ric • 190 • updated 22 days ago by msimmer92 • 150
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1
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Union Peaks For Peaks Called On Different Strains
chip-seq written 6.8 years ago by Sander Timmer • 700 • updated 23 days ago by Biostar ♦♦ 20
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