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Microarray data correlation plot between highly expressed genes
R chip-seq rna-seq python written 1 day ago by asmitabioinfo2203 • 0
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56
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1
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count data from microarray dataset 72 CEL file and related ARR files.
R chip-seq microarray affimatrix cel and arr files written 3 days ago by aarvaBioinfo • 10
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Can we draw PCA with genotyping data align with geographic data for two different populations in different locations?
genome chip-seq snp written 22 days ago by XYZeinab • 0
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gff3 format, modENCODE, score and ChIP-Seq
score chip-seq bed file written 5 days ago by mkh • 40 • updated 5 days ago by genomax ♦ 83k
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Visualizing a set of genes in ENCODE ChIPseq dataset-Any tools or tutorials?
genome R chip-seq written 7 days ago by goodwinjinesh • 0
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Recommendation for using limma-voom workflow for ChIPseq analysis. Or other tool for capturing global histone mark difference?
chip-seq written 7 days ago by bioinfouser • 50
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680
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Using STAR mapping multiple files get loop issue
gene software error chip-seq rna-seq written 12 months ago by lingziqi8278 • 0 • updated 8 days ago by Biostar ♦♦ 20
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7 follow
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How to avoid hardcoding in R? How to automatize R scripts?
R chip-seq r programming rna-seq written 9 days ago by bioinfouser • 50
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Hypergeometic test for the overlap of two set of genomic intervals (e.g. from Chip-seq data)
hypergeometic test chip-seq statistics written 9 days ago by guixien • 0
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ChIP seq: Trying to use ChIPQC to measure quality of reads
chip-seq written 24 days ago by aropri • 0
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63
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Log2 fold change correlation for ChIP seq data - do I need a FDR cut off?
chip-seq written 13 days ago by emilyprice16 • 0
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78
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What information does ChIA-PET2 tool trim statistics terms provide exactly?
chip-seq written 13 days ago by bioinfo89 • 40
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Transcription regulation and CHIP-seq questions
sequence chip-seq sequencing written 14 days ago by jbrody11 • 0
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Annotation of acetylation ChIP-seq peaks to the nearest gene and reads cont
chip-seq written 18 days ago by elb • 170
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how to treat replicates with Chip-seq meta-analysis
sequence chip-seq written 5.9 years ago by Krisr • 460 • updated 18 days ago by Biostar ♦♦ 20
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124
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2
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Difference of DiffBind library size normalisation vs DESeq2 library size normalisation
diffbind deseq2 chip-seq rna-seq normalisation written 18 days ago by bioinfouser • 50 • updated 18 days ago by Rory Stark • 660
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Mapping Histone Chip-seq reads to defined region around TSS of RefSeq genes
chip-seq written 18 days ago by Researcher • 0
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63
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HOMER motif finder, output divergent organisms
motif finder chip-seq written 20 days ago by santosL • 0
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How to best summarize read counts overlapping promoters when read counts are defined from different regions
gene assembly next-gen chip-seq rna-seq written 20 days ago by jamespower • 50 • updated 20 days ago by geek_y ♦ 11k
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SICER for ChIP-seq broad peaks
chip-seq sicer written 20 days ago by marco • 0
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131
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Obtained too many chip-seq peaks after diffbind, how to set a criteria to select more "significant" genes?
diffbind chip-seq written 22 days ago by yepeh72919 • 10 • updated 20 days ago by Rory Stark • 660
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Changing distance to TSS (tssRegion in ChIPseeker) during peak annotation in ChIP-seq analysis does not change the total number of genes associated with the peaks
chip-seq written 21 days ago by vyazar • 10
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1
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134
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1
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Error while invoking. dba.analyze() in DiffBind
software error R chip-seq written 22 days ago by PocketChange • 0 • updated 22 days ago by Rory Stark • 660
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1
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123
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1
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what should the STR in the bwa mem -R option contain?
alignment chip-seq written 23 days ago by wrab425 • 10
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1
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90
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1
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how to remove bedpe deplication
chip-seq hic written 23 days ago by liulinli17m • 0 • updated 23 days ago by ATpoint ♦ 34k
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Tool: TidyWrappers : an R package to deal with an object tbl
gene-expression R chip-seq wrappers rna-seq tool written 24 days ago by Chirag Parsania • 1.8k
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2
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103
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Treated technical replicates as biological replicates by mistake
chip-seq rna-seq written 25 days ago by srhic • 0 • updated 25 days ago by ATpoint ♦ 34k
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105
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Integration of ATACseq, RNAseq data with ChIPseq data
chip-seq integration written 25 days ago by kuchmiyanna • 0
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98
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1
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Pseudo-Counts or Zero-Containing True Counts for Mann-Whitney-U Test?
R chip-seq written 25 days ago by jparker4 • 20 • updated 25 days ago by Asaf ♦ 7.6k
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ChIA-PET2: Error: Don't have enough confident interactions to learn the model.
chip-seq written 8 weeks ago by bioinfo89 • 40 • updated 25 days ago by lakhujanivijay ♦ 5.0k
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