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1.6k

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Get trace data for all four bases from ab1 file

sanger trace ab1 chromatogram written 19 months ago by st.ph.n • 2.5k • updated 19 months ago by sacha • 1.8k

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661

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Is it possible to manipulate Chromatogram ?

sanger fastq chromatogram .abi written 23 months ago by mhmtgenc85 • 40

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931

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Any suggestion for sanger sequencing result editing

sanger sequencing chromatogram written 23 months ago by liaoyunshi • 0 • updated 23 months ago by trausch • 1.4k

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1.5k

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Help: Phred quality for ab1 files

biojava sequence abif phred chromatogram written 3.5 years ago by rabidbirdman4 • 0 • updated 2.4 years ago by trausch • 1.4k

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804

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use R to read CQS file (chromatogram format from Beckman Coulter)

R chromatogram written 2.5 years ago by Timothée Flutre • 20 • updated 2.5 years ago by Jean-Karim Heriche ♦ 20k

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2.3k

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What do the fields DATA.9 - DATA.12 represent in an ab1 file ?

sequencing ab1 chromatogram written 4.7 years ago by anuragm • 130 • updated 4.7 years ago by Dan D ♦ 6.8k

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Recent Replies

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Hi, I have removed the extraneous code commenting you had in your post. Please use these formatt...
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I think it's the same for `read_file` and `blast_output`. I would also recommend to use f-strings...
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You can even write `cheeseburger` plus an increasing integer to make unique read names behind the...
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A "normal" format would look something like the below (taken from Wikipedia). The main difference...
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Maybe it is me but this looks like a normal fastq sequence to me, what is the problem?
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Yeah, I guess that would do it. Basically reducing genes to protein-coding is what many microarra...
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The way you wrote this, `threads` is not interpreted as a variable. It is just a string inside qu...
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Makes a lot of sense, thanks. So I just did "`cat Homo_sapiens.GRCh38.95.gtf | grep "gene_biotype...
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Thanks the both of you
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The GTF file should typically contain annotation information on the gene type. Select for example...
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If you load BAM files they are basically never the same which is normal and expected as read coun...

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