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2.4k

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Get trace data for all four bases from ab1 file

sanger trace ab1 chromatogram written 2.5 years ago by st.ph.n • 2.5k • updated 2.5 years ago by sacha • 1.9k

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849

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Is it possible to manipulate Chromatogram ?

sanger fastq chromatogram .abi written 2.8 years ago by mhmtgenc85 • 40

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1.3k

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Any suggestion for sanger sequencing result editing

sanger sequencing chromatogram written 2.8 years ago by liaoyunshi • 0 • updated 2.8 years ago by trausch • 1.5k

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1.8k

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Help: Phred quality for ab1 files

biojava sequence abif phred chromatogram written 4.4 years ago by rabidbirdman4 • 0 • updated 3.3 years ago by trausch • 1.5k

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1.0k

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use R to read CQS file (chromatogram format from Beckman Coulter)

R chromatogram written 3.4 years ago by Timothée Flutre • 20 • updated 3.4 years ago by Jean-Karim Heriche ♦ 22k

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2.7k

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What do the fields DATA.9 - DATA.12 represent in an ab1 file ?

sequencing ab1 chromatogram written 5.6 years ago by anuragm • 130 • updated 5.6 years ago by Dan D ♦ 7.1k

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Recent Replies

C: Removal of primers from matched sequences by cpad0112 ♦ 13k
try cutadapt
C: Why Salmon produces different quantification results compared with featureCounts by biock • 30
Thank you. I run featureCounts on your advice but I found the correlation didn't change a lot com...
A: How to extract reads that map with BWA exactly twice by thomashartwig80 • 0
Hi. We are using BWA-mem (now BWA-mem2). Using a diploid genome was the only way to truly elimina...
C: Comparing GISTIC2 G-Scores in matched samples by Kevin Blighe ♦ 61k
Great that you got it working, but I would definitely 'spot check' the end result just to make su...
C: Comparing GISTIC2 G-Scores in matched samples by noodle • 30
In terms of calculating the difference in G scores at overlapping regions, does taking the log2 ...
C: Comparing GISTIC2 G-Scores in matched samples by noodle • 30
Okies, i think I have it figured out- thanks Kevin! 2 heads are definitely better than 1 # f...
A: Linkage_pruning in BCFtools+prune:phased or unphased VCF input file? by Aremkh • 10
In case you have the same question, please refer to the answer at: https://github.com/samtools/bc...
A: Michigan imputation server error by Kevin Blighe ♦ 61k
Please take a look at the comments and answers in this previous thread, and try the solutions su...
C: Missing pseudogenes in annotation report by Seraph • 0
Hi ugurcabuk I tried to use this tool, but as I am a beginner, I am still facing this problem;...
C: Why Salmon produces very different quantification results compared with featureC by biock • 30
Thank you for reminding me of this, I think the reason is that I quantified transcripts with prot...
C: bowtie mate 2 error by Arup Ghosh ♦ 2.5k
The current version of `bwa mem` does not have any -1 or -2 option. `bwa mem [options] [in2.fq]`
C: Gene starts with "LOC" prefix ? by sunnykevin97 • 50
https://www.ncbi.nlm.nih.gov/search/all/?term=LOC117740983 https://www.ncbi.nlm.nih.gov/gene/1177...

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