Showing: cigarreset
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4
votes
1
answer
102
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1
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CIGAR operations performed according to strand or to read?
sequencing read format sam cigar written 3 days ago by Macspider1.7k • updated 3 days ago by h.mon9.8k
2
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0
answers
174
views
0
answers
4
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2
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156
views
7 follow
2
answers
filter BAM file for reads that map 100% identity
cigar bam samtools written 18 days ago by oriolebaltimore30 • updated 18 days ago by h.mon9.8k
5
votes
2
answers
5.0k
views
2
answers
Extracting Reads Containing A Specific Variant From A Bam File
cigar format sam bam written 4.1 years ago by Nick Stoler60 • updated 9 weeks ago by Biostar ♦♦ 20
4
votes
1
answer
518
views
1
answer
Mismatch on first base gives wrong TSS
cigar first-base mismatch clip-mismatch cage written 10 months ago by Chirag Nepal1.9k • updated 7 months ago by Charles Plessy2.3k
10
votes
2
answers
514
views
6 follow
2
answers
How to convert extended CIGAR to regular CIGAR
cigar bam sam written 10 months ago by artemd10 • updated 10 months ago by Pierre Lindenbaum102k
8
votes
1
answer
570
views
1
answer
Splitting SAM/BAM alignments
cigar bam sam htslib written 13 months ago by Zev.Kronenberg11k • updated 13 months ago by Pierre Lindenbaum102k
0
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0
answers
310
views
0
answers
8
votes
1
answer
5.9k
views
11 follow
1
answer
Samtools Filter Reads Cigar Field
cigar samtools written 4.3 years ago by dfernan610 • updated 19 months ago by Biostar ♦♦ 20
5
votes
1
answer
1.4k
views
1
answer
How does a skipped region from a CIGAR string (N) look in the alignment?
cigar alignment written 2.6 years ago by Niek De Klein2.4k • updated 2.6 years ago by Devon Ryan74k
12
votes
2
answers
4.3k
views
6 follow
2
answers
In Cigar String, What Is The Difference Between 'N' And 'D' ?
cigar bam sam written 3.7 years ago by Chen590 • updated 2.6 years ago by amblina40
0
votes
1
answer
827
views
1
answer
Using CIGAR match operators
cigar sam written 2.7 years ago by mikhail.shugay3.2k • updated 2.7 years ago by Brian Bushnell15k
5
votes
1
answer
1.8k
views
1
answer
CIGAR M operator maps off end of reference
exome cigar written 3.1 years ago by Chirag Nepal1.9k • updated 3.1 years ago by smilefreak400
28
votes
2
answers
3.5k
views
6 follow
2
answers
Is it possible to reconstruct alignment from CIGAR and MD strings alone?
cigar alignment rna-seq written 3.3 years ago by Lynxoid210 • updated 3.2 years ago by Istvan Albert ♦♦ 75k
2
votes
1
answer
2.1k
views
1
answer
Why "No real operator (M|I|D|N)" in picard?
cigar picard written 3.5 years ago by dariober8.4k • updated 3.5 years ago by Pierre Lindenbaum102k
0
votes
0
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828
views
0
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Missing Cigar In Sam Output (Cushaw2)
cigar sam written 4.0 years ago by stolarek.ir550 • updated 3.5 years ago by Biostar ♦♦ 20
3
votes
0
answers
3.4k
views
5 follow
0
answers
Cigar And Sequence Length Inconsistent
sequence cigar length samtools written 5.5 years ago by Bnfoguy70 • updated 3.8 years ago by Biostar ♦♦ 20
3
votes
1
answer
1.5k
views
1
answer
Cigar And Md String Do Not Match In Bowtie 0.12.8
cigar bowtie written 5.3 years ago by jeremy80 • updated 3.8 years ago by Biostar ♦♦ 20
4
votes
2
answers
3.0k
views
2
answers
Reconstructing Alignments From Cigar Strings
cigar alignment multiple written 5.8 years ago by Revh50 • updated 3.8 years ago by Biostar ♦♦ 20
6
votes
2
answers
1.7k
views
5 follow
2
answers
Cigar String - Are Soft Clipped Reads Only Ever At The Start Or End?
cigar written 4.1 years ago by Clare120 • updated 4.1 years ago by Ashutosh Pandey11k
3
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1
answer
1.6k
views
1
answer
2
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1
answer
2.3k
views
1
answer
How To Filter Out Reads With A Bad Cigar M Operator
cigar picard samtools bam written 4.4 years ago by munch290 • updated 4.4 years ago by KCC3.8k
2
votes
2
answers
5.2k
views
2
answers
4
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1
answer
1.9k
views
1
answer
0
votes
2
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1.9k
views
2
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R: Readaligned Only Junction Reads From Bam-File
R bam cigar written 5.3 years ago by lydia.herzel0 • updated 5.3 years ago by Istvan Albert ♦♦ 75k
14
votes
1
answer
3.9k
views
8 follow
1
answer
Deciphering Cigar
cigar next-gen samtools sam alignment written 5.5 years ago by Leszek3.8k
48
votes
2
answers
7.7k
views
9 follow
2
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Should We Attempt To Redefine The Cigar String In Sam/Bam Format?
cigar format samtools sam written 5.9 years ago by Michael Dondrup43k • updated 5.9 years ago by lh330k
28
votes
3
answers
8.9k
views
8 follow
3
answers
How To Define Percent-Identity From A Cigar String/ A Bam/Sam File?
cigar bam sam written 5.9 years ago by Michael Dondrup43k • updated 5.9 years ago by Wen.Huang1.1k
9
votes
2
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4.0k
views
7 follow
2
answers
Is There Any R Package To Parse Cigar-Element Of Sam Files?
cigar samtools R parsing written 6.5 years ago by Eva30 • updated 6.4 years ago by Michael Dondrup43k
13
votes
4
answers
2.4k
views
8 follow
4
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What Does This Cigar Mean?
cigar tophat samtools written 6.5 years ago by Gangcai230 • updated 6.5 years ago by Marvin790
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