Showing: cigarreset
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2
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1
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96
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1
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Filtering noise out of SAM file using CIGAR
cigar sam written 13 days ago by blur90 • updated 13 days ago by Carambakaracho620
2
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1
answer
213
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1
answer
19
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2
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6.4k
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5 follow
2
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Going From Cigar String In Sam To Genomic Coordinates?
cigar alignment sam parsing written 8.4 years ago by User 9996790 • updated 3 months ago by RamRS19k
3
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0
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316
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0
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6
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2
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381
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2
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How to convert from a cigar string to extended cigar string?
extended cigar cigar c++ sam bam written 7 months ago by omariqbal20170 • updated 7 months ago by genomax59k
8
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2
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456
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2
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When Hard clipping is used instead of the Soft clipping ?
clipping cigar hard clipping written 7 months ago by 2012secondseason10 • updated 7 months ago by Devon Ryan86k
2
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1
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253
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1
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In CIGAR table, what does P operation mean?
cigar silent deletion padding written 8 months ago by 2012secondseason10 • updated 8 months ago by Pierre Lindenbaum115k
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3
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237
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3
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4
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1
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262
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1
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How can overlap with paired end sequence??
cigar paired end alignment tablet written 8 months ago by 2012secondseason10 • updated 8 months ago by d-cameron1.9k
3
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1
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341
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1
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extract all the cigar sequences
cigar written 9 months ago by KVC_bioinfo350 • updated 9 months ago by cschu1811.4k
3
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2
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1.9k
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2
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Cigar And Md String Do Not Match In Bowtie 0.12.8
cigar bowtie written 6.2 years ago by jeremy80 • updated 11 months ago by Rubus Pi0
4
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1
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492
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1
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CIGAR operations performed according to strand or to read?
sequencing read format sam cigar written 12 months ago by Macspider2.6k • updated 12 months ago by h.mon21k
2
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0
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533
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0
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4
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2
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674
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7 follow
2
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filter BAM file for reads that map 100% identity
cigar bam samtools written 12 months ago by oriolebaltimore60 • updated 12 months ago by h.mon21k
6
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2
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6.4k
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5 follow
2
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Extracting Reads Containing A Specific Variant From A Bam File
cigar format sam bam written 5.1 years ago by Nick Stoler60 • updated 14 months ago by Biostar ♦♦ 20
4
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1
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874
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1
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Mismatch on first base gives wrong TSS
cigar first-base mismatch clip-mismatch cage written 22 months ago by Chirag Nepal2.1k • updated 19 months ago by Charles Plessy2.6k
13
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2
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1.1k
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7 follow
2
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How to convert extended CIGAR to regular CIGAR
cigar bam sam written 22 months ago by artemd10 • updated 22 months ago by Pierre Lindenbaum115k
8
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1
answer
935
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1
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Splitting SAM/BAM alignments
cigar bam sam htslib written 2.0 years ago by Zev.Kronenberg11k • updated 2.0 years ago by Pierre Lindenbaum115k
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549
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0
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8
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1
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7.2k
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11 follow
1
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Samtools Filter Reads Cigar Field
cigar samtools written 5.3 years ago by dfernan640 • updated 2.6 years ago by Biostar ♦♦ 20
5
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1
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2.0k
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1
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How does a skipped region from a CIGAR string (N) look in the alignment?
cigar alignment written 3.5 years ago by Niek De Klein2.4k • updated 3.5 years ago by Devon Ryan86k
17
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2
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6.2k
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6 follow
2
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In Cigar String, What Is The Difference Between 'N' And 'D' ?
cigar bam sam written 4.7 years ago by Chen760 • updated 3.6 years ago by amblina70
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1
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1.0k
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1
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Using CIGAR match operators
cigar sam written 3.7 years ago by mikhail.shugay3.3k • updated 3.7 years ago by Brian Bushnell16k
5
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1
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2.4k
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1
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CIGAR M operator maps off end of reference
exome cigar written 4.1 years ago by Chirag Nepal2.1k • updated 4.1 years ago by smilefreak400
32
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2
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4.5k
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6 follow
2
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Is it possible to reconstruct alignment from CIGAR and MD strings alone?
cigar alignment rna-seq written 4.2 years ago by Lynxoid220 • updated 4.2 years ago by Istvan Albert ♦♦ 78k
2
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1
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2.6k
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1
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Why "No real operator (M|I|D|N)" in picard?
cigar picard written 4.5 years ago by dariober9.7k • updated 4.5 years ago by Pierre Lindenbaum115k
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1.1k
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Missing Cigar In Sam Output (Cushaw2)
cigar sam written 5.0 years ago by stolarek.ir550 • updated 4.5 years ago by Biostar ♦♦ 20
3
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4.1k
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5 follow
0
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Cigar And Sequence Length Inconsistent
sequence cigar length samtools written 6.5 years ago by Bnfoguy70 • updated 4.7 years ago by Biostar ♦♦ 20
5
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2
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3.7k
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2
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Reconstructing Alignments From Cigar Strings
cigar alignment multiple written 6.8 years ago by Revh60 • updated 4.8 years ago by Biostar ♦♦ 20
6
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2
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2.1k
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5 follow
2
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Cigar String - Are Soft Clipped Reads Only Ever At The Start Or End?
cigar written 5.1 years ago by Clare120 • updated 5.1 years ago by Ashutosh Pandey11k
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