Latest
News
Jobs
Tutorials
Forum
Tags
About
FAQ
Community
Planet
New Post
Log In
New Post
Latest
News
Jobs
Tutorials
Forum
Tags
Planet
Users
Log In
Sign Up
About
Limit : all time
all time
today
this week
this month
this year
90,462 results • Page
1 of 1810
Sort: Rank
Rank
Views
Votes
Replies
0
votes
0
replies
5
views
Multiply BED scores by a normalization factor in precise intervals in Granges object.
R
20 minutes ago by
massimofaggiani
• 0
4
votes
5
replies
215
views
Forum:
R - A bioinformatic analysis programming language for NGS
R
BI
bioinformatics
NGS
updated 27 minutes ago by
hypnos997
• 0 • written 1 day ago by
guoxuantong
▴ 110
0
votes
2
replies
20
views
Blog:
hello ever one
hello
updated 12 minutes ago by
ATpoint
48k • written 33 minutes ago by
hypnos997
• 0
2
votes
6
replies
40
views
Meaning letters in TCGA sample barcode field
GDC
Barcode
TCGA
updated 9 minutes ago by
Kevin Blighe
72k • written 1 hour ago by
sumitguptabt
• 0
1
vote
0
replies
12
views
Methylation frequency + and - strand
methylation
Bismark
1 hour ago by
Palgrave
▴ 30
0
votes
0
replies
11
views
Error : Fail to open file file.vcf for normalization with vt
normalization
vt
vcf
1 hour ago by
Sar
• 0
0
votes
2
replies
69
views
Salmon Script Troubleshooting for RNA Seq Data
NextGenerationSequencing
RNAseq
Bash
Slurm
Salmon
updated 1 hour ago by
ATpoint
48k • written 12 hours ago by
makylakb
• 0
0
votes
0
replies
17
views
Adjusting for the effect of other variables for DGEA in EdgeR
RNASeq
edgeR
DGEA
1 hour ago by
emilien.hourquet
• 0
0
votes
1
reply
23
views
Normalisation before edgeR for RNA-Seq
rna-seq
edgeR
updated 1 hour ago by
ATpoint
48k • written 2 hours ago by
ZheFrench
▴ 320
0
votes
0
replies
12
views
MASURCA output
masurca
2 hours ago by
kilcdincer
▴ 10
0
votes
3
replies
32
views
short length amino acids
short
amino
acids
alignment
length
updated 10 minutes ago by
GenoMax
99k • written 2 hours ago by
desptsp
• 0
0
votes
1
reply
224
views
comparing enriched GO terms between species
RNA-Seq
go
annotation
updated 2 hours ago by
babalyigit
• 0 • written 9 months ago by
martinaweil
• 0
1
vote
4
replies
181
views
MASURCA error for multiple entries
masurca
updated 20 minutes ago by
Kevin Blighe
72k • written 5 days ago by
kilcdincer
▴ 10
0
votes
0
replies
13
views
Including ambiguous samples in DGE as sensitivity analysis
Sensitivity
Limma
DGE
2 hours ago by
mdrnao
• 0
0
votes
3
replies
43
views
Download all Bacteria accession list from NCBI
number
accession
NCBI
updated just now by
GenoMax
99k • written 3 hours ago by
K.Gee
▴ 40
0
votes
0
replies
35
views
Correlation test based on position sliding window for multiple variables
statistics
R
corr.test
1 hour ago by
User000
▴ 440
0
votes
1
reply
21
views
Precision of variant calling (INDELs)
INDELs
hap.py
updated 10 minutes ago by
desouzareis.r
▴ 220 • written 3 hours ago by
esimonova.me
▴ 10
580
votes
155
replies
64k
views
89 follow
News:
The Biostar Handbook. A bioinformatics e-book for beginners.
handbook
tutorial
training
News
updated 5 days ago by
Biostar
10 • written 4.4 years ago by
Istvan Albert
87k
0
votes
0
replies
22
views
DEG list turn into keggscape
Cytoscape
RNA-Sequencing
4 hours ago by
ashwing.kofficial
• 0
0
votes
0
replies
55
views
How can I slicing to RS4 type in rpy2?
rpy2
slicing
rs4
rpy
4 hours ago by
dxodnd
• 0
0
votes
0
replies
58
views
Trycycler Assembly_Issue in Flye and MInimap2
Flye
minimap2
Trycycler
5 hours ago by
Shiv_2
• 0
0
votes
1
reply
71
views
Combining results tables to plot automatecally
DESeq2
updated 5 hours ago by
swbarnes2
9.7k • written 6 hours ago by
hydrobeanz
• 0
1
vote
1
reply
75
views
R command worked yesterday, but stalls today?
R
updated 5 hours ago by
Mensur Dlakic
★ 10k • written 5 hours ago by
cthangav
• 0
0
votes
0
replies
53
views
Cytoscape: Advice on best analysis methods for PPI network
ontology
network
gene
PPI
cytoscape
5 hours ago by
Haley
• 0
0
votes
1
reply
69
views
scRNASeq equal number of cells across conditions
seurat
scRNAseq
updated 3 hours ago by
ATpoint
48k • written 6 hours ago by
TriS
★ 4.3k
0
votes
0
replies
753
views
How to design WGCNA: one analysis over all sample or seperate analysis (using consensus module analysis)?
WGCNA
RNA-seq
8 hours ago by
leesooyeon94
• 0
0
votes
0
replies
41
views
Job:
HIRING: Postdoctoral Scholar in Genomic Epidemiology
epidemiology
genomics
bioinformatics
postdoc
10 hours ago by
genomicshr
▴ 30
0
votes
0
replies
32
views
How to filter and impute missing snps in vcf file
Imputation
SNPs
PLINK
VCF
12 hours ago by
Manoj
▴ 100
2
votes
2
replies
80
views
Arlequin
phylogeny
Bioinformatics
9 hours ago by
Matthew Aaron
• 0
0
votes
1
reply
58
views
How to verify putative miRNA
BLAST
miRNA
putative
Automate
updated 2 hours ago by
jens
• 0 • written 15 hours ago by
arcanjomjr
• 0
0
votes
0
replies
37
views
low unique mapped reads from STAR
sequencing
rnaseq
Alignment
star
updated 14 hours ago by
GenoMax
99k • written 14 hours ago by
dorentinah
• 0
0
votes
0
replies
38
views
samtools depth and sambamba depth produce different results
sambamba
samtools
depth
coverage
14 hours ago by
Johannes
• 0
2
votes
2
replies
324
views
comprehensive bacterial phylogenetic tree with edge lengths for all of RefSeq or Genbank at NCBI?
refseq
ncbi
tree
phylogeny
updated 13 hours ago by
5heikki
9.7k • written 22 hours ago by
cmo
▴ 70
1
vote
1
reply
49
views
Checking for(a ton of) overrepresented sequences origins from 16S sequencing
Overrepresented
Amplicon
Blast
FastQC
Illumina
updated 15 hours ago by
GenoMax
99k • written 15 hours ago by
regisantonioli
▴ 20
0
votes
0
replies
31
views
design matrix considering treatment, timepoints and batches
limma
design
microarray
experimental
15 hours ago by
Iván
▴ 20
0
votes
2
replies
157
views
multiqc report, should I care for "Per Base Sequence Content" module if using metagenomic datasets?
fastqc
multiqc
updated 15 hours ago by
Ram
32k • written 16 hours ago by
v.berriosfarias
▴ 10
0
votes
1
reply
64
views
RNA seq experiment design - two in house cell lines, data analysis with CCLE
experimentdesign
RNAseq
batcheffect
updated 16 hours ago by
swbarnes2
9.7k • written 20 hours ago by
zoeyn192666
• 0
1
vote
2
replies
81
views
Extract unmapped reads as pairs from (S/B)AM and create corresponding split read files.
bam
sam
unmapped
paired
fastq
3 hours ago by
jens
• 0
6
votes
2
replies
69
views
How to rename/replace the multiline fasta subsequence header in a fasta file?
DNA
alignment
fasta
RNA
18 hours ago by
sunnykevin97
▴ 380
3
votes
5
replies
388
views
Intall MAGIC-BLAST in Ubuntu from BASH SHELL in windows powershell.
magicblast
ncbi
ubuntu
linux
powershell
updated 6 months ago by
GenoMax
99k • written 6 months ago by
jjvelazcoa
• 0
0
votes
2
replies
59
views
Mutect2 vcf.stats file missing
GATK
mutect2
vcf.stats
3 hours ago by
rugarem
• 0
0
votes
1
reply
57
views
How to set variant FILTER in a VCF file based on overlap with regions in a BED file
annotation
bed
vcf
updated 19 hours ago by
Pierre Lindenbaum
135k • written 21 hours ago by
William
★ 4.8k
1
vote
3
replies
141
views
BWA mem or samtools have any parameter to filter the mismatch reads?
mapping
samtools
reads
BWA
8 hours ago by
Damon_Wan
• 0
1
vote
1
reply
53
views
Uniprot Retrieve/ID mapping
Uniprot
Mapping
PDB2Uniprot
updated 18 hours ago by
GenoMax
99k • written 21 hours ago by
jmungar2
• 0
1
vote
7
replies
141
views
CNVkit detected CNV number
CNVKit
copynumbervariation
cnr
updated 16 hours ago by
jared.andrews07
9.2k • written 20 hours ago by
enes
• 0
1
vote
2
replies
118
views
igv track auto scaling fails in batch mode
igv
updated 20 hours ago by
GenoMax
99k • written 7 weeks ago by
calvin99
• 0
0
votes
0
replies
29
views
Error running MutSigCV: "missing mutation_type_dictionary_file"
error
MutSigCV
mutation
type
22 hours ago by
alizee.diatchenko
• 0
0
votes
0
replies
29
views
Negative homozygosity rates from plink --check-sex?
plink
allosomes
sex-check
gwas
22 hours ago by
krassowski.michal
▴ 90
2
votes
5
replies
117
views
How to download via biopython (proteom or genome) individual or random organisms?
genom
proteom
updated 20 hours ago by
GenoMax
99k • written 22 hours ago by
ja4123
• 0
8
votes
4
replies
110
views
gzip: merged.fastq.gz not in gzip format
RNAseq
19 hours ago by
Kai_Qi
▴ 100
90,462 results • Page
1 of 1810
Recent Votes
Comment: Meaning letters in TCGA sample barcode field
Comment: Meaning letters in TCGA sample barcode field
Answer: MASURCA error for multiple entries
Comment: Finding how many times a nucleotide appear in the same position
Normalization of ATAC SEQ data for the proper deeptools heatmap
Methylation frequency + and - strand
Comment: R - A bioinformatic analysis programming language for NGS
Recent Locations •
All
Ireland, Republic of,
1 minute ago
India,
1 minute ago
Spain,
1 minute ago
India,
3 minutes ago
Glasgow, Scotland,
4 minutes ago
Germany,
4 minutes ago
Austria,
4 minutes ago
Recent Awards •
All
Scholar
to
Devon Ryan
98k
Commentator
to
Nicolas Rosewick
9.3k
Scholar
to
William
★ 4.8k
Teacher
to
Michael Dondrup
48k
Teacher
to
Alex Reynolds
32k
Popular Question
to
reza
▴ 250
Commentator
to
Bastien Hervé
4.9k
Recent Replies
Comment: short length amino acids
by
GenoMax
99k
> Can anybody help me how to blast them locally ? You can install `blast` program locally and use that. BLAST Handbook from NCBI: https://…
Comment: Meaning letters in TCGA sample barcode field
by
Kevin Blighe
72k
You are welcome, Sumit.
Comment: Precision of variant calling (INDELs)
by
desouzareis.r
▴ 220
Hi, yes it could. You can compare coverage between them, especially in regions where there are false positive and false negative variants r…
Comment: hello ever one
by
ATpoint
48k
If you enjoy chatting please feel free to join our Slack channel: https://www.biostars.org/p/305186/
Comment: hello ever one
by
GenoMax
99k
Biostars does not have an `Introductions` tradition. I don't want to delete this post because it may ban your account. Please do not post t…
Comment: Meaning letters in TCGA sample barcode field
by
sumitguptabt
• 0
Thank you so much @kevin I will look into it and update you ASAP. BW Sumit
Comment: MASURCA error for multiple entries
by
Kevin Blighe
72k
Great to hear - thank you.
Comment: Meaning letters in TCGA sample barcode field
by
Kevin Blighe
72k
Hi, you can search for these here: https://portal.gdc.cancer.gov/ They seem to be from Clinical Proteomic Tumor Analysis Consortium (CPTAC)
Comment: GATK 4 and Spark multithreading
by
Victoria
• 0
I am sorry, I didn't realise that wasn't allowed, I have deleted the other post.
Comment: Meaning letters in TCGA sample barcode field
by
sumitguptabt
• 0
@krushnach80 Thank you, dear, These samples are from: cancer types: bronchus and lung, subtype: adenomas and adenocarcinomas. The data is H…
Comment: Meaning letters in TCGA sample barcode field
by
krushnach80
▴ 910
what samples are these which tissue type?
Answer: Meaning letters in TCGA sample barcode field
by
sumitguptabt
• 0
@kevin would you please help?
Comment: short length amino acids
by
desptsp
• 0
I have to practice alignment between short-length amino acids sequence with blast and I'm trying to find similarity and identity . For exam…
Answer: Normalisation before edgeR for RNA-Seq
by
ATpoint
48k
The manual instructs to use the raw counts. https://www.bioconductor.org/packages/release/bioc/vignettes/edgeR/inst/doc/edgeRUsersGuide.pd…
Comment: R - A bioinformatic analysis programming language for NGS
by
guoxuantong
▴ 110
Since I am quite fresh here, thanks for giving me these suggestions.
Traffic: 2373 users visited in the last hour
Content
Search
Users
Tags
Badges
Help
About
FAQ
Access
RSS
API
Stats
Use of this site constitutes acceptance of our
User Agreement and Privacy Policy
.
Powered by the
version 2.3.6