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Answer: Perl. How to retrieve data until a keyword in GenBank?
by
JC
13k
The trick over here is to start capturing when you found "LOCUS" and stop when you found "COMMENT", something like:
#!/usr/bin/perl
…
Comment: Error: --fst requires at least two nonempty clusters.
by
dre.gaudio
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0
Hi, I have the same problem posted (cluster file similar to the posted one). Even when using --double-id flag. the result is always "Error:…
Comment: [Meta] Use of AI
by
Ram
39k
I'd say just point to the ChatGPT conversation - there seems to be a feature that lets one link to the conversation. Or, just show a screen…
Comment: Difference between USCS exon coordinates and ensembl
by
amy__
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50
Great thank you, I want to use the coordinates in bedtools to work out the coverage of some genes over those regions - do you think use the…
Answer: Is it possible to add a dendrogram as a top annotation using ComplexHeatmap ?
by
Ram
39k
I don't think that's possible. A dendrogram is not a per-column annotation, it's a representation of a hierarchically clustered distance ma…
Comment: Why is coordinate sort required before findng read depths?
by
Ram
39k
I've moving this to a comment as "use a different tool with the same requirement" is not an answer to "why is it a requirement"
Comment: calculate p value and associated z score for snp-gene pair
by
rheab1230
▴
140
Okay, I got it.
Thank you so much for the response.
Can you tell me what should be the range of FDR value to consider for significance?
Comment: Embryo transcriptome
by
Basti
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1.5k
I would suggest to directly search articles that have generated (sc)RNA-seq data. I think you would find some high quality studies that pro…
Comment: calculate p value and associated z score for snp-gene pair
by
LChart
2.6k
Beta is the effect size (for rs12160750: going from 0 alleles to 1 allele raises the expression by 0.19108 on average). t-stat is the "z-st…
Comment: NCBI API, Perl
by
GenoMax
129k
What does not help you? You can use both tools above to retrieve sequences using command line. Provide a few example accessions and I can s…
Comment: NCBI API, Perl
by
alessandro.alma00
•
0
It doesn't help me a lot. But you known if it is possible to do what i want?
Comment: Data is not displaying in DATABASE......error is not showing in IDE
by
Souvik
•
0
Thank you. But the command already added before. Can you give other way to write the two functions and show the code?
Comment: Installation of PPFinder
by
ATpoint
72k
Is this software from 2006 really still the go-to solution for your problem? You apparently already face problems before even starting wit…
Comment: Embryo transcriptome
by
ATpoint
72k
> but the results gather several transcriptomes in one file and do not indicate how many transcriptomes there is in the file
I do not und…
Comment: hisat2 Error 137
by
ATpoint
72k
I assume you googled the error and excluded the top-levle suggestions such as https://www.biostars.org/p/9503569/#9503639 ?
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