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Recent Replies
Comment: Renaming fasta files with their headers
by
liorglic
★
1.3k
It's hard to understand what your input and desired output look like. Please edit your original question so it includes a clear explanation…
Comment: Renaming fasta files with their headers
by
sebabiokr
▴
10
Thank you for your code, but i have a fasta file which contains [gene=rps12] ids, so i want to rename the header with gene id alone like >r…
Answer: How to speed-up to contruct phylogenetic tree
by
Mensur Dlakic
★
25k
It depends on how long your protein is. Generally speaking, it shouldn't take weeks or months. Trees with more than ~100 branches are very …
Comment: How to speed-up to contruct phylogenetic tree
by
liorglic
★
1.3k
Is there a specific reason you need to use MEGA? Maybe try another software which might be faster (e.g. PhyML, RaxML, IQ-TREE). Also, do yo…
Answer: Renaming fasta files with their headers
by
liorglic
★
1.3k
Assuming that you have a directory containing multiple files with `.fasta` extension, each containing one record, you can do something like…
Comment: What are the methods to correlate/study metabolomics data to proteomics data?
by
LauferVA
3.8k
thank you, @wuschel, for the comprehensive reply.
Comment: Renaming fasta files with their headers
by
sebabiokr
▴
10
i tried this command
awk -F 'gene=|]|[.]{1}' '/^>/ {print $2}' 7seqNC_018552.1cds.fasta > 7NC_018552.fasta
got only gene name alone wit…
Answer: Converting a .frq file to a data frame?
by
zau saa
▴
70
simply add a word to line 1 as the name of column 6
Comment: SRA toolkit (NCBI) - sra to fasta
by
Sanjukta
•
0
Hi there, will it be an issue if we do not mention 60?
Comment: Renaming fasta files with their headers
by
sebabiokr
▴
10
Yes there are many answer in this forum but they are specific to header line. it doesnot work with my header line and its difficult for me …
Answer: What are the methods to correlate/study metabolomics data to proteomics data?
by
WUSCHEL
▴
740
There are various methods to correlate and study metabolomics data to proteomics data. These methods can be broadly categorized into:
1. C…
Comment: Renaming fasta files with their headers
by
Mensur Dlakic
★
25k
This type of question is among the most frequently asked on this forum. Searching through previous posts should give you several different …
Comment: ChatGPT optimized for bioinformatics questions
by
LauferVA
3.8k
they are still actively developing it. it will continue to get some of the functionality that gpt3.5 has over time.
val
Comment: which statistical test and which package for comapre datasets?
by
LauferVA
3.8k
ok, but, suppose they are different.
WHY are they different. if they are different, will you proceed from that knowledge directly to some …
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