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News: Variant Analysis, Bioinformatics Prerequisites, & Genome Browser workshops at UC Davis

class news training workshop written 5 months ago by nikhil.ashok.joshi • 10

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Parsing FASTA file using class in Python

fasta python class biopython parsing written 21 months ago by mrth • 30 • updated 21 months ago by Matt Shirley ♦ 8.7k

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Tutorial: Scripting for Biology - Online Virtual Classroom-based Module

perl python class tutorial go written 3.3 years ago by ugly.betty77 • 1.0k

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C: Allele frequencies not matching with reference panel (HRC) by RamRS ♦ 19k
Please use the formatting bar (especially the `code` option) to present your post better. I've do...
C: Converting WGBS data set to analyze with methylKit by RamRS ♦ 19k
Please do not paste screenshots of text. You can use the code formatting option to showcase text ...
C: FPKM and DESEq - RNAseq by Kevin Blighe ♦ 33k
Also: 1. Cufflinks is old - the upgraded version is called StringTie. 2. Data measured by FPKM...
C: GRCH38 counts significantly lower than for version 37? by RamRS ♦ 19k
>alignment files are the same size File size is useless when it's not an extreme value. It is...
A: FPKM and DESEq - RNAseq by swbarnes2 ♦ 4.5k
> Can I get the genes differentially expressed between the groups with > the FPKM values us...
C: MCScanX result problem by HZZ0036 • 0
Hi! I used SyMAP instead of MCScan.
C: Stranger Things: unexpected limitations of popular tools by Maximilian Haeussler • 1.3k
The UCSC bigBed format is something that comes very close: it has only very few defined minimal c...
C: Can you please help me in my haplotype analysis? by h.mon ♦ 21k
>I do not know how to import my data into SPSS and how should I report. As we don't know anyt...
C: How to set up Swissprot database for ncbi-blast+ using anaconda by h.mon ♦ 21k
You don't **need** to set up $BLASTDB. For example, my databases are scattered all over - most of...
C: "GOplot" and problem with making an integrated matrix by hel226 • 0
Thank you so much it worked!
A: Interpreting mapping contaminants by h.mon ♦ 21k
A shortcoming in your approach is to compare to a limited number of contaminants, and to just one...
C: [IMMEDIATE JOB OPENING] HPC Systems Administrator, Center for Research Informati by mforde84 • 1.2k
Argonne did a report on this to those interested: https://science.energy.gov/~/media/ascr/pdf/pro...

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