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News: Variant Analysis, Bioinformatics Prerequisites, & Genome Browser workshops at UC Davis

class news training workshop written 2.1 years ago by nikhil.ashok.joshi • 10

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Parsing FASTA file using class in Python

fasta python class biopython parsing written 3.4 years ago by mrth • 30 • updated 3.4 years ago by Matt Shirley ♦ 9.4k

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Tutorial: Scripting for Biology - Online Virtual Classroom-based Module

perl python class tutorial go written 4.9 years ago by ugly.betty77 • 1.0k

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Colorado State University, 1 minute ago
United Kingdom, 2 minutes ago
France/Nantes/Institut du Thorax - INSERM UMR1087, 4 minutes ago

Recent Awards • All »

Appreciated to Pierre Lindenbaum ♦ 129k
Scholar to genomax ♦ 87k
Teacher to Pierre Lindenbaum ♦ 129k
Appreciated to Assa Yeroslaviz • 1.4k
Teacher to rpolicastro • 540
Epic Question to Istvan Albert ♦♦ 84k

Recent Replies

C: Normalizing Bigwig values by jared.andrews07 ♦ 6.4k
Yes, feature counts should work fine, or [csaw](https://bioconductor.org/packages/3.11/workflows/...
C: How to extract reads on positive strand for a specific region from bam? by venkat • 0
this is what I have done already. But I don't understand when I visualized the `sample_specificre...
C: How to extract reads on positive strand for a specific region from bam? by cpad0112 ♦ 13k
Refer to https://www.biostars.org/p/14378/
C: grep -v command by cpad0112 ♦ 13k
Try with -w or word boundary and ^ anchor. $ cat test.txt chr1 chr111 chr11 chr1 ...
C: How to keep the top hits only in the output file of hmmscan? by genomax ♦ 87k
Please use: https://www.biostars.org/p/309884/
C: How to keep the top hits only in the output file of hmmscan? by audrey.durand • 0
https://freeimage.host/i/d0LcrX
C: Odd Fastq sequences; 50% Aligned more than once by genomax ♦ 87k
If an answer was helpful, you should upvote it; if the answer resolved your question, you should ...
A: Odd Fastq sequences; 50% Aligned more than once by pjferrandi • 0
Indeed, these data were small RNA seq specific data. My PI is in the process of getting the corre...
C: How to download a Pfam database for hmmer searches? by audrey.durand • 0
Thank you for your help genomax!
C: Integrate four scRNA-seq datas by rpolicastro • 540
That's fine, there will almodt always be matching cell barcodes since they are not completely ran...
C: R data repository to use in shiny app by rpolicastro • 540
You want to have access to that large combined list in the shiny app? Unless your server has a lo...
C: How to download a Pfam database for hmmer searches? by genomax ♦ 87k
PFAM files: ftp://ftp.ebi.ac.uk/pub/databases/Pfam/current_release Pfam-A.hmm ...

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