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Cluster for subclass discovery?

rnaseq cluster class microarray written 4 weeks ago by thyleal • 150

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News: Variant Analysis, Bioinformatics Prerequisites, & Genome Browser workshops at UC Davis

class news training workshop written 2.5 years ago by nikhil.ashok.joshi • 10

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Parsing FASTA file using class in Python

fasta python class biopython parsing written 3.9 years ago by mrth • 30 • updated 3.9 years ago by Matt Shirley ♦ 9.5k

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Tutorial: Scripting for Biology - Online Virtual Classroom-based Module

perl python class tutorial go written 5.4 years ago by ugly.betty77 • 1.0k

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Teacher to Kevin Blighe ♦ 69k
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Recent Replies

C: Stringtie transcripts to Gene Name by vkkodali • 2.4k
If I understand correctly, you don't see `GeneID:40027734` (which corresponds to the gene CJI97_0...
C: Stringtie transcripts to Gene Name by shrivadeepak • 0
Thanks for the reply. I do use the same command with -G, but what i get is the reference ids like...
C: Getting "Floating point exception (core dumped)" when running mauveAligner by langziv • 0
Sorry about the delay. These are crazy days. Yes. I'm runnnig 2 assemblies in every run. I just ...
C: Plotting the loading of single PCs (PCAtools) by Kevin Blighe ♦ 69k
Hello again, this should now work in the version that is on GitHub, i.e., selecting just a single...
C: convert ancestry.com text file to vcf by LTDavid • 20
Hi, Mariana. I'm not sure.
C: Problem with design for DESeq2 by i.sudbery ♦ 10k
The more complex a model, the less powerful the analysis is. The `Disease:Patient.n` involves the...
C: Problem with design for DESeq2 by Carlo Yague ♦ 5.5k
Yes, but it is not statistically possible to analyze both the `disease` effect and the `patient` ...
C: should each RNA-seq has Circular RNA? by ATpoint ♦ 44k
I guess so.
C: Problem with design for DESeq2 by 5cantaloupe5 • 0
I tried this and it works but I am getting strange results. If I just use a model without taking ...
C: Problem with design for DESeq2 by 5cantaloupe5 • 0
Doesn't running separate analyses for the diseases go against the DESeq2 recommendation of using ...
C: Problem with design for DESeq2 by 5cantaloupe5 • 0
Ah that was a typo when transferring the table here, good catch. I have fixed it in my original p...
A: Problem with design for DESeq2 by i.sudbery ♦ 10k
Because you have different numbers of patients in each Disease group, you are falling victim to t...

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