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News: Variant Analysis, Bioinformatics Prerequisites, & Genome Browser workshops at UC Davis

class news training workshop written 11 months ago by nikhil.ashok.joshi • 10

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Parsing FASTA file using class in Python

fasta python class biopython parsing written 2.3 years ago by mrth • 30 • updated 2.3 years ago by Matt Shirley ♦ 9.0k

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Tutorial: Scripting for Biology - Online Virtual Classroom-based Module

perl python class tutorial go written 3.8 years ago by ugly.betty77 • 1.0k

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Scholar to Pierre Lindenbaum ♦ 120k
Popular Question to Pierre Lindenbaum ♦ 120k
Teacher to Kevin Blighe ♦ 43k
Teacher to Pierre Lindenbaum ♦ 120k
Scholar to Pierre Lindenbaum ♦ 120k
Popular Question to Vijay Lakhujani ♦ 4.1k

Recent Replies

C: PhD: Research interest or better program? by Sslero • 0
Is this still true even though I have a several first author papers and a few co-author papers in...
C: Normalizing transcriptome data by tissue type by Kevin Blighe ♦ 43k
My former colleagues are dreadfully slow with it - I do not currently know the status. I have pub...
C: Filter Variant in DNA repair genes by WouterDeCoster ♦ 39k
> I tried with biomart but no success. Then please show us what you tried, and we can put yo...
C: Normalizing transcriptome data by tissue type by Natasha • 30
Hi Kevin, "could you maybe drop us a link should you notice the work was approved and published?...
C: What is the "-" option of samtools? by vw • 20
Thank you! You solved my question.
C: Perform one basecommand fot multiple files and get output for each file in CWL by Tom • 250
Hi Maria, The workflow is missing a space character between "-" and "class" in the `requirements...
A: What is the "-" option of samtools? by Pierre Lindenbaum ♦ 120k
'-' just means `stdin/standard input` > http://www.htslib.org/doc/samtools-1.2.html > >...
C: retrieving survival informations from cBioportal using Rstudio by Kevin Blighe ♦ 43k
If I run your code, I receive an error message: getProfileData(mycgds,c('PTEN','ERBB2'),myge...
C: ORF reading in Python by asfarlathifbt • 0
Thank you so much. I wasn't familiar with yield function. It's helpful :)
C: ORF reading in Python by a.zielezinski ♦ 8.7k
Please see my answer.
A: ORF reading in Python by a.zielezinski ♦ 8.7k
I edited your `startstop_codon()` function to handle multiple ORFs in a single DNA sequence. ...
C: Mapping exonic sequences across species by Geparada • 1.4k
any links to this "published set"? I have only seen public lists of gene homologies, but they are...

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