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News: Variant Analysis, Bioinformatics Prerequisites, & Genome Browser workshops at UC Davis

class news training workshop written 7 months ago by nikhil.ashok.joshi • 10

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Parsing FASTA file using class in Python

fasta python class biopython parsing written 23 months ago by mrth • 30 • updated 23 months ago by Matt Shirley ♦ 8.8k

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Tutorial: Scripting for Biology - Online Virtual Classroom-based Module

perl python class tutorial go written 3.5 years ago by ugly.betty77 • 1.0k

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Recent Replies

C: How To Get Bed File Containing Exons Of Canonical Transcripts And Their Correspo by biokoala ♦ 3.6k
Pulling this thread once again for a question: Why the file "UCSC_canonical.bed" contains all t...
A: Cannot identify software used to make image by manuel.belmadani • 450
I don't know of a software that does this exactly per say, but if you know some R you should be a...
C: Cannot identify software used to make image by manuel.belmadani • 450
You should be able to right click the image, copy address and insert it using the image button: !...
C: DEseq three-group comparison by sdbaney • 0
wow, thank you so much for your help and manners.
C: DESEq2 Factor/Level Design by sdbaney • 0
What I meant was, what sample - which tissue has the higher/lower expression? It doesn't tell me ...
C: Can NanoString ncounter miRNA data be analyzed with RNA-Seq tools? by myguestp • 0
I would normalize with the spike-ins, which are present in all samples. Or what do you mean?
C: Uncompress The 1001 Genome vcf.gz by xiangxiangmeng • 20
which dataset do you use? There are many vcf files. I do not know which one is used for gwas anal...
C: Automating Trimmomatic for total Noobs by swbarnes2 ♦ 4.8k
You realize most bioinformaticists are self taught? Google how to get the file names in a direct...
C: Automating Trimmomatic for total Noobs by new15b • 0
Alright, we got it to run for these names (well it has processed C1 and C2 so far): X2_C1_R1 X2_C...
C: Understanding the SA tag, Samtools FLAG, and Chimeric Alignments by nzs208 • 0
Hi Pierre, Thanks for getting back to me. These supplemental alignments from the same read will n...
C: Understanding the SA tag, Samtools FLAG, and Chimeric Alignments by Pierre Lindenbaum ♦ 116k
> ases, the Samtools Flag will be set to 0, the read is NOT paired (no mate) , mapped, on for...
C: how to plot multi pheatmap into one figure by Yered • 0
Thank you for posting the answer. I can across it today, and it was very helpful for me.

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