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Sciclone clonevol integration

clonevol sciclone written 18 months ago by sm.hashemin • 90 • updated 18 months ago by Chris Miller ♦ 21k

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Does sciClone work on mouse exome data?

clonevol sciclone written 17 months ago by sm.hashemin • 90 • updated 6 months ago by Biostar ♦♦ 20

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Recent Replies

A: grouping of maf results in GWAS by chrchang523 ♦ 6.1k
By itself, this is nothing to worry about. If you have no missing genotypes, there are only 5335...
C: Any recommendation for pathway analysis of Wheat RNA-seq data? by bbmisraccb • 40
And, sure not an ID conversion issue? Strange that AgriGO would not map any plant DEGs for GO ana...
A: how to find a pathway using a set of metabolites by bbmisraccb • 40
Hi, Try FELLA: https://bmcbioinformatics.biomedcentral.com/articles/10.1186/s12859-018-2487-5 an...
A: Multi omics dataset analyses, where to start? And methods to use? by bbmisraccb • 40
Hi, In our Review entitled: "Integrated omics: tools, advances and future approaches: https://j...
C: Low BUSCO completeness value for protists by qingtian.guan • 0
Hi Sishuo, thank you for your response. The paper is really useful, but I did not see they used t...
C: Low BUSCO completeness value for protists by qingtian.guan • 0
Hi Nterhoeven, thank you for your response. I am working on ameba which is found in open freshwat...
C: fastqc per base sequence content and kmer content fail by ATpoint ♦ 26k
https://www.biostars.org/p/180962/ https://www.biostars.org/p/91701/
A: grouping of maf results in GWAS by joanfitz5 • 0
Thank you for getting back to me. I am doing a linear analysis in plink2 (covariates not included...
A: Any recommendation for pathway analysis of Wheat RNA-seq data? by ashish • 230
You can use [plant reactome][1] for wheat pathway mapping. The website is currently down for main...
C: Empty output when use HOMER annotatePeak.pl by Nitin Narwade • 430
You need to add a homer bin directory in your executable path (ex.: .bashrc). Follow the instruc...
C: How to perform a gene set analysis in edgeR? by Nitin Narwade • 430
What are the IDs (First column in the edgeR input file) you're using to run edgeR.?
C: Quick access/download to CCLE RNA-seq data (FASTQ/BAM files) by bstrs • 0
Hi Kevin, so the limitation is the download speed at my work place (in a Nordic country). I get ...

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