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A: for go enrichment analysis which tool do you recommend? by
jared.andrews07 ♦ 7.3k
I personally prefer [g:profiler](https://biit.cs.ut.ee/gprofiler/gost), as it allows you to set y...
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C: GSEA Preranked Query by
jared.andrews07 ♦ 7.3k
Yes, I imagine high frequencies of zeros in either dataset will confound the ranking.
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RamRS ♦ 30k
Your previous answers were moved to comments by moderators, so you don't need to worry about them...
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nalewis • 10
Ah I updated my R and everything is working! Thank you!
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I think you've nailed it in the intro: > Although I know that bcftools is not meant for polyp...
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C: Contrast matrix for paired samples in limma by
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Under `moderate` you will find `delete` option.
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C: Contrast matrix for paired samples in limma by
starick.marick • 0
sorry. How can I delete the answer?
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Can you post some of your data using `dput(head((csv[[1]]))`?
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Row bind list of csvs into one dataframe then we can work on the column. csv <- do.call(r...
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C: Contrast matrix for paired samples in limma by
RamRS ♦ 30k
Only add answers **if you're answering the question**. If not, use Comments instead.
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A: Contrast matrix for paired samples in limma by
starick.marick • 0
Hey guys, did you find any answers?
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C: Does it make sense to transform expression data to zscore after performing RMA? by
Kevin Blighe ♦ 66k
The Z-score transformation is primarily for visualisation, indeed, as everything is then centered...
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