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written 17 months ago by
juanjo75es • 80
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Istvan Albert ♦♦ 86k
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written 5.2 years ago by
siso • 20
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5.2 years ago by
dendrov.kan • 20
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Recent Replies
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C: cannot download refseq genomes by
GenoMax ♦ 96k
Have you tried to reduce the number of `parallel` jobs to see if that results in successful downl...
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C: cannot download refseq genomes by
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thanks, will give `datasets` a try - however, out of curiosity, I have used parallel in this con...
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A: cannot download refseq genomes by
GenoMax ♦ 96k
This is likely being caused by your use of `parallel`. Your IP may be getting flagged by trying t...
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C: command line Ncbi Blast SRA remote by
GenoMax ♦ 96k
This does come with a risk that NCBI may flag your IP and your computer may be banned from using ...
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C: command line Ncbi Blast SRA remote by
acx01c • 0
Clearly blasting SRA is more computationally expensive, no it is natural that there are some rest...
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C: command line Ncbi Blast SRA remote by
acx01c • 0
Sometimes the SRA request works too, but more frequently it fails with > Non-interactive SRA...
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Thanks for writing something sensible.
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Talk to the core and request the platforms they support. Request for their input in the context ...
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C: Recommendations for genome-wide genotyping platform, array and data analysis sof by
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I will most likely have 50 samples. Does that qualify as a lot of of samples or?
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GenoMax ♦ 96k
NCBI moved SRA database into amazon/google cloud last year. That may be one of the reasons why on...
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It works exactly as required. Thanks a lot :) Please convert your comment to an answer so that I...
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That is indeed a puzzle. Can you post the sequence of the read pre-trimming?
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