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Recent Replies
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C: Different reference human genome by
v.shapovalova1 • 10
Thank you for reply! This a 'trial' experiment with small amount of reads. But I suppose that fin...
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C: Different reference human genome by
genomax ♦ 91k
These differences look pretty minor and should not affect your end results. What is it that you a...
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C: correlation of genes by
adR • 40
@JC, thanks! Actually, I have a few genes in both tissues that showed pair correlation. However,...
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C: Extract SRA reads per RG using fasterq-dump by
MAPK • 1.6k
I actually downloaded SRA with `prefetch` first and then used that in `fastq-dump` `-Z "./${SRR}"...
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C: how to identify where multi-mappers, or "non primary hits" are mapping to by
bertb • 10
Thank you for your response. The command I used for alignment was: hisat2 -p 8 --rg-id=UWN_...
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C: possible method to draw a 3D structure by PDB or Blast or swiss model by
RamRS ♦ 30k
> I think Homology modeling predicts the 3D structure compared to protein threading, As far a...
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C: Protein-Protein interaction (Cytoscape) by
sindhujarajavelu • 0
Thanks for the reply I want to make sure that the network created wasn't by random. I mean that i...
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C: Extract SRA reads per RG using fasterq-dump by
ATpoint ♦ 40k
You should use `prefetch` to first download the SRA file and then use fastq-dump on that file. I ...
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C: Interpretation of two PCA plots by
swbarnes2 ♦ 8.9k
The decision as to which end of the PC is positive and which is negative is essense arbitrary. S...
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A: Protein-Protein interaction (Cytoscape) by
xanderpico • 290
There is an app for that: http://apps.cytoscape.org/apps/networkrandomizer. The associated paper ...
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xanderpico • 290
You may have seen these already, but there are tutorial and documentation links from both the MCO...
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RamRS ♦ 30k
There is no need to sign off using your username in every answer, especially when the username is...
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