cnv call Posts

Latest

Open

RNA-Seq

ChIP-Seq

SNP

Assembly

Tutorials

Tools

Jobs

Forum

Planet

All »

Home

Welcome to Biostar! about • faq • rss

Community

Log In

Sign Up

Add New Post

Showing selected topics • reset

or Classic search

vote

answers

2.0k

views

answers

Mismatch in exome capture and mapping reference assembly in TCGA WXS data ?

cnv call exome capture file tcga whole exome data written 4.3 years ago by subhajit06 • 110 • updated 4.3 years ago by Cyriac Kandoth ♦ 5.5k

Recent Votes

Recent Locations • All »

Canada, just now
Germany, just now

Recent Awards • All »

Teacher to ATpoint ♦ 40k
Autobiographer to emiliaclarke • 0
Popular Question to lakhujanivijay ♦ 5.3k
Teacher to rpolicastro • 2.0k
Scholar to rpolicastro • 2.0k
Teacher to rpolicastro • 2.0k

Recent Replies

C: R - How to convert a sequence in a fasta file into a matrix by kbaitsi • 0
I didn't know that, I will tag it now, thank you
C: R - How to convert a sequence in a fasta file into a matrix by kbaitsi • 0
Thank you very much for your answer, I tried the first one and it works. How can I store the resu...
C: R - How to convert a sequence in a fasta file into a matrix by cpad0112 ♦ 14k
? If it's an exercise, are you not supposed to work on it, by your self? At least you should have...
C: R - How to convert a sequence in a fasta file into a matrix by kbaitsi • 0
Yep unfortunately I have to use R, it's part of an exercise...
C: FDR for multiple contrasts by dariober ♦ 11k
The section "Multiple Testing Across Contrasts" in the [limma](https://bioconductor.org/packages/...
C: Strandness of ENCODE RNA-seq data by ATpoint ♦ 40k
The `Specific protocol for library ENCLB555AYX` section contains a complete wetlab protocol, inde...
C: how to process vcf files for GWAS analysis by Kevin Blighe ♦ 66k
Please explore PLINK
C: R - How to convert a sequence in a fasta file into a matrix by genomax ♦ 91k
There are more efficient programs to generate k-mers from long sequences. Do you have to do this ...
C: FDR for multiple contrasts by ATpoint ♦ 40k
The `object` itself already contains the contrast that you give to this function since it is the ...
C: R - How to convert a sequence in a fasta file into a matrix by kbaitsi • 0
Thank you so much for your answer, I tried it and it worked. Can I use this if I have a really lo...
C: R - How to convert a sequence in a fasta file into a matrix by cpad0112 ♦ 14k
> stringr::str_match_all("ATCGATCGGGTTTAC", "(?=(.{6}))")[[1]][,2] [1] "ATCGAT" ...
C: Strandness of ENCODE RNA-seq data by husensofteng • 270
Thanks, the `bed` file is just extracted from the GENCODE `gtf`. I will give `GUESSmyLT ` a try.

Content

Help

About
FAQ

Access

RSS
Stats
API

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Traffic: 2014 users visited in the last hour