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Is there a way to plot both tumor and normal samples' copy number segments on the same plot using CNVkit scatter
cnvkit written 6 weeks ago by asjannu • 0 • updated 10 days ago by Eric T. • 2.1k
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2
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139
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confused about how to run pipeline
cnvkit written 12 days ago by andrew.lamb • 0 • updated 12 days ago by toralmanvar • 290
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1
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78
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1
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CNV details about the normal samples?
cnvkit cnv written 17 days ago by kvn95ss • 0 • updated 17 days ago by toralmanvar • 290
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1
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144
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1
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Is there a way to use CNVkit without a reference from normal samples?
cnvkit sequence written 6 weeks ago by leandro.bispo.oliveira • 0 • updated 6 weeks ago by h.mon ♦ 14k
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1.0k
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cnvkit example data
cnvkit bam cnv written 2.0 years ago by laxvid • 10 • updated 10 weeks ago by Biostar ♦♦ 20
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1
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225
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1
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Regarding Cnvkit analysis
cnvkit written 3 months ago by DL • 10 • updated 3 months ago by Eric T. • 2.1k
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1
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303
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1
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CNVkit - how many normal samples do I need for the pooled normal reference?
genome cnvkit written 3 months ago by ibphuangchen • 10 • updated 3 months ago by Eric T. • 2.1k
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1
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150
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1
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CNVKit - Gene labels in 'diagram'
cnvkit cnv calling written 3 months ago by asjannu • 0 • updated 3 months ago by Eric T. • 2.1k
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1
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347
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1
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tumor/normal WGS with CNVkit has many small segments with small copy number changes
cnvkit cnv wgs written 3 months ago by swheelan • 10 • updated 3 months ago by Eric T. • 2.1k
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400
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CNVKIT import errors
cnvkit python cnv linux written 3 months ago by alons • 250 • updated 3 months ago by Eric T. • 2.1k
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324
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1
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How to merge CNV of multiple samples from CNVkit
cnvkit cnv written 5 months ago by cc • 10 • updated 5 months ago by Eric T. • 2.1k
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2
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361
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2
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cnvkit segmetrics on multiple files
cnvkit cnv written 6 months ago by adoak • 10
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2
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339
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2
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Is cnvkit coverage output split into non-overlapping segments?
exome cnvkit coverage written 7 months ago by fbrundu • 260 • updated 6 months ago by Eric T. • 2.1k
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397
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How to assess confidence of cnvkit calls
cnvkit cnv written 7 months ago by phusion • 0 • updated 6 months ago by Kevin Blighe ♦ 19k
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1
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362
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1
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CNVkit calling strategies with matched-normal tumor
cnvkit whole-exome copy-number-variation written 7 months ago by fbrundu • 260 • updated 7 months ago by Kevin Blighe ♦ 19k
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516
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How to import the output of CNVkit into GISTIC2.0 ?
cnvkit gistic2.0 written 8 months ago by Tonny • 20 • updated 8 months ago by Eric T. • 2.1k
0
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1
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659
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1
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CNVkit for germline samples
cnvkit next-gen targetsequencing germline written 8 months ago by merella.stefania • 0 • updated 8 months ago by Eric T. • 2.1k
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1
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434
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1
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Error due to annotation file while running target module from CNVkit tool
exome cnvkit cnv sequencing written 8 months ago by arta • 450 • updated 8 months ago by Eric T. • 2.1k
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2
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469
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Using CNVkit for hybrid capture data -- the huge CNV regions in results does not make any sense
cnvkit hybrid capture cnv written 9 months ago by wujunjames • 0 • updated 8 months ago by Eric T. • 2.1k
2
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1
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419
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1
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How to get the range of LOH?
cnvkit written 9 months ago by Tonny • 20 • updated 9 months ago by Eric T. • 2.1k
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1
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510
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1
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Understanding Weight column in .cns files in cnvkit
cnvkit weight call written 9 months ago by ingrid.schulman • 0 • updated 9 months ago by Eric T. • 2.1k
2
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1
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527
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1
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Problems using cnvkit for ctDNA targeted sequencing
cnvkit ctdna results written 9 months ago by ingrid.schulman • 0 • updated 9 months ago by Eric T. • 2.1k
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1
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442
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1
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Recurrent Segmentation Errors
cnvkit written 12 months ago by AndyW • 0 • updated 10 months ago by Eric T. • 2.1k
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2
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"Shifted" copy number ratios coming from cnvkit?
cnvkit somatic copy number written 11 months ago by gil.hornung • 60 • updated 10 months ago by Eric T. • 2.1k
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1
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376
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1
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Question about run cnvkit on DNAnexus
cnvkit snp dnanexus written 11 months ago by qyang • 20 • updated 10 months ago by Eric T. • 2.1k
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600
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5 follow
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CNV detection of single cell genome sequencing
cnvkit single cell genome sequencing cnv written 10 months ago by Tonny • 20 • updated 10 months ago by Eric T. • 2.1k
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1
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587
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1
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Using cnvkit for targeted amplicon sequencing
cnvkit targeted amplicon sequencing reference cnv written 11 months ago by ingrid.schulman • 0 • updated 10 months ago by Eric T. • 2.1k
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500
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CNVkit - creating a reference panel from 'normal' parts of tumour bams
cnvkit sequencing cnv tumour written 10 months ago by ferenju • 20
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1
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645
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Using THETA2 from CNVkit: what king of vcf do you need?
cnvkit tumor purity theta2 written 12 months ago by gil.hornung • 60 • updated 12 months ago by Eric T. • 2.1k
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1
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520
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1
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CNVkit reference.cnn .cnr .cns log ratio
cnvkit cnv written 12 months ago by nina.naitatmane • 20 • updated 12 months ago by Eric T. • 2.1k
<prev • 57 results • page 1 of 2 • next >
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