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<prev • 96 results • page 1 of 4 • next >
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Noisy germline CNV data using CNVKit
cnvkit copy number variation germline cnv gcnv written 5 months ago by omg what am I doing • 60 • updated 28 days ago by brunobsouzaa • 50
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1
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176
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1
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BAF without normal control, to do or not! or how
cnvkit baf theta no controls theta2 written 11 weeks ago by sm.hashemin • 90 • updated 4 weeks ago by zhouyangyu • 0
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Problem with CNVkit using samples with single-end sequenced WES
genome cnvkit next-gen sequencing written 7 weeks ago by tangya1982 • 0 • updated 7 weeks ago by Kevin Blighe ♦ 49k
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1
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245
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CNVKIT - unable to produce scatter and diagram pdfs
cnvkit written 3 months ago by ww22runner • 0 • updated 9 weeks ago by Eric T. • 2.5k
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Are SV tools as thorough in CNV detection as CNVkit?
sv cnvkit parliament manta cnv written 10 weeks ago by syntax • 50
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modifying CNV plots (scatter plot)
cnvkit scatter_plot cnv written 10 weeks ago by suhye • 0 • updated 10 weeks ago by lakhujanivijay ♦ 4.5k
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146
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CNVkit - diagram problem
cnvkit written 12 weeks ago by bioinformatica • 0
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203
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1
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Weights in cnvkit cnr output
cnvkit written 5 months ago by biologist • 10 • updated 11 weeks ago by Eric T. • 2.5k
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128
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cnvkit bgzf_read error 4 after 4 bytes
cnvkit samtools bzip written 12 weeks ago by sm.hashemin • 90 • updated 11 weeks ago by Eric T. • 2.5k
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CNVKit scatter graph will not plot individual chromosomes
cnvkit.py cnvkit cnv cnvkit.py scatter written 4 months ago by omg what am I doing • 60
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125
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cnvkit filtering low depth bins
exome cnvkit exome capture written 4 months ago by pzratnog89 • 0
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281
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how to adjust the length of y axis
cnvkit cnv heatmap written 4 months ago by shengkeyuan111 • 0 • updated 4 months ago by SMK • 1.9k
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193
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How to get actual location of CNV from CNVKit
cnvkit cnv wgs written 4 months ago by rabio • 0 • updated 4 months ago by MatthewP • 260
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1
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Adding IDT CNV Backbone Spike-in to Small Targeted Panel for CNV Calling With CNVkit
targeted cnvkit panel cnv written 5 months ago by erikt • 0 • updated 5 months ago by markus.riester • 480
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No CNV calls in CNVkit import-rna
cnvkit import-rna written 5 months ago by a.v.vliet • 0 • updated 5 months ago by Eric T. • 2.5k
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365
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Passing cnvkit output to pureCN to account for cellularity
cnvkit purecn written 5 months ago by biologist • 10 • updated 5 months ago by markus.riester • 480
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2
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460
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CNVkit for somatic copy number detection
exome cnvkit wes cnv written 6 months ago by stephaniem • 0
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1
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206
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1
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Why cnvkit genemetrics command default threshold is 0.2?
cnvkit written 5 months ago by MatthewP • 260 • updated 5 months ago by ATpoint ♦ 24k
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1
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236
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Can CVNkit call CNV correctly at HLA genes region?
cnvkit wes hla written 5 months ago by MatthewP • 260 • updated 5 months ago by linouhao • 0
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2
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CNVkit output problem: Is "log2" the same as "Seg_mean"? OR how can I get "Seg_mean" with "log2"?
seg_mean cnvkit cnv written 8 months ago by Laven9 • 0 • updated 6 months ago by Eric T. • 2.5k
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335
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I got a problem with making normal reference using cnvkit
paired-wgs cnvkit normal-reference written 6 months ago by prosium • 0 • updated 6 months ago by Eric T. • 2.5k
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scatter plots with single chromosome gives IndexError
cnvkit bcbio written 15 months ago by fenrir.sivar • 0 • updated 6 months ago by joseph.fass • 10
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'ValueError: No usable data points to plot out of 0 probes, 0 segments, 0 variants' in Scatter Plot
cnvkit written 8 months ago by wei.wei • 10 • updated 6 months ago by Biostar ♦♦ 20
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310
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Problems wth cnvkit scatter for genes
cnvkit written 6 months ago by biologist • 10 • updated 6 months ago by h.mon ♦ 27k
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443
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Installation error CNVkit: could not find the executable 'Rscript'
cnvkit written 7 months ago by A • 3.5k
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1
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419
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CNVkit: Choice of Bin Size and CNV Calling
cnvkit genemetrics written 7 months ago by wei.wei • 10 • updated 7 months ago by Chris Miller ♦ 21k
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1
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553
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CNVkit: Dealing with noisy tumor samples
cnvkit written 8 months ago by Fil • 0 • updated 8 months ago by Eric T. • 2.5k
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1
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396
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CNVkit Heatmap samples clustering
cnvkit cnv clustering heatmap written 8 months ago by jim.paredes • 0 • updated 8 months ago by Eric T. • 2.5k
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330
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Error in CNV Calling with Annotation
cnvkit written 8 months ago by wei.wei • 10 • updated 8 months ago by Eric T. • 2.5k
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1
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349
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1
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Annotation tool for cnvKit
cnvkit cnvscan cnv written 10 months ago by carolina.naomi • 0 • updated 10 months ago by geocarvalho • 110
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