Latest
Open
RNA-Seq
ChIP-Seq
SNP
Assembly
Tutorials
Tools
Jobs
Forum
Planet
All »
Home
Log In
Showing selected topics • reset
or   Classic search
<prev • 104 results • page 1 of 4 • next >
0
votes
0
answers
35
views
0
answers
Flat reference vs. pooled reference (unknown target files)
cnvkit written 4 days ago by newbio17 • 80
2
votes
2
answers
456
views
2
answers
Noisy germline CNV data using CNVKit
cnvkit copy number variation germline cnv gcnv written 9 months ago by omg what am I doing • 60 • updated 10 days ago by sutturka • 170
0
votes
1
answer
73
views
1
answer
CNVKit interpretation of results?
cnvkit written 22 days ago by vctrm67 • 10 • updated 22 days ago by jared.andrews07 ♦ 5.0k
0
votes
0
answers
87
views
0
answers
cnvkit Error message "length of weights should be the same as the number of probes Execution halted"
cnvkit sequencing written 7 weeks ago by lhaiyan3 • 30 • updated 7 weeks ago by Medhat ♦ 8.6k
1
vote
0
answers
131
views
0
answers
how to use output of cnvkit to plot
R cnvkit written 8 weeks ago by guofengwang123 • 0 • updated 8 weeks ago by genomax ♦ 78k
0
votes
0
answers
168
views
0
answers
how to understand output form from CNVkit
wgs cnv cnvkit written 12 weeks ago by prosium • 0
2
votes
1
answer
357
views
1
answer
ImportError: cannot import name zip_longest
cnvkit written 3 months ago by russell.stewart.j • 0 • updated 3 months ago by jared.andrews07 ♦ 5.0k
15
votes
2
answers
4.6k
views
2
answers
Help with understanding CNVkit output
cnvkit ngs cnv cancer written 4.0 years ago by alons • 270 • updated 3 months ago by linouhao • 0
0
votes
0
answers
122
views
0
answers
Error segmentation steps
cnvkit written 4 months ago by Hällyss • 50 • updated 4 months ago by ATpoint ♦ 30k
0
votes
0
answers
154
views
0
answers
How to use CNVKit
cnvkit written 4 months ago by vctrm67 • 10
0
votes
1
answer
272
views
1
answer
BAF without normal control, to do or not! or how
cnvkit baf theta no controls theta2 written 7 months ago by sm.hashemin • 90 • updated 5 months ago by zhouyangyu • 0
0
votes
0
answers
217
views
0
answers
Problem with CNVkit using samples with single-end sequenced WES
genome cnvkit next-gen sequencing written 6 months ago by tangya1982 • 0 • updated 6 months ago by Kevin Blighe ♦ 55k
2
votes
1
answer
389
views
1
answer
CNVKIT - unable to produce scatter and diagram pdfs
cnvkit written 7 months ago by ww22runner • 0 • updated 6 months ago by Eric T. • 2.6k
0
votes
0
answers
248
views
0
answers
Are SV tools as thorough in CNV detection as CNVkit?
sv cnvkit parliament manta cnv written 6 months ago by syntax • 60
0
votes
0
answers
235
views
0
answers
modifying CNV plots (scatter plot)
cnvkit scatter_plot cnv written 6 months ago by suhye • 0 • updated 6 months ago by lakhujanivijay ♦ 4.8k
0
votes
2
answers
222
views
2
answers
CNVkit - diagram problem
cnvkit written 7 months ago by bioinformatica • 0
0
votes
1
answer
317
views
1
answer
Weights in cnvkit cnr output
cnvkit written 9 months ago by biologist • 10 • updated 7 months ago by Eric T. • 2.6k
4
votes
1
answer
264
views
1
answer
cnvkit bgzf_read error 4 after 4 bytes
cnvkit samtools bzip written 7 months ago by sm.hashemin • 90 • updated 7 months ago by Eric T. • 2.6k
4
votes
0
answers
319
views
0
answers
CNVKit scatter graph will not plot individual chromosomes
cnvkit.py cnvkit cnv cnvkit.py scatter written 8 months ago by omg what am I doing • 60
0
votes
0
answers
204
views
0
answers
cnvkit filtering low depth bins
exome cnvkit exome capture written 8 months ago by pzratnog89 • 0
1
vote
1
answer
426
views
1
answer
how to adjust the length of y axis
cnvkit cnv heatmap written 9 months ago by shengkeyuan111 • 0 • updated 9 months ago by SMK • 1.9k
0
votes
1
answer
287
views
1
answer
How to get actual location of CNV from CNVKit
cnvkit cnv wgs written 9 months ago by rabio • 0 • updated 9 months ago by MatthewP • 390
2
votes
1
answer
400
views
1
answer
Adding IDT CNV Backbone Spike-in to Small Targeted Panel for CNV Calling With CNVkit
targeted cnvkit panel cnv written 9 months ago by erikt • 0 • updated 9 months ago by markus.riester • 480
1
vote
1
answer
285
views
1
answer
No CNV calls in CNVkit import-rna
cnvkit import-rna written 10 months ago by a.v.vliet • 0 • updated 10 months ago by Eric T. • 2.6k
5
votes
1
answer
524
views
1
answer
Passing cnvkit output to pureCN to account for cellularity
cnvkit purecn written 10 months ago by biologist • 10 • updated 10 months ago by markus.riester • 480
3
votes
2
answers
688
views
2
answers
CNVkit for somatic copy number detection
exome cnvkit wes cnv written 10 months ago by stephaniem • 0
2
votes
1
answer
296
views
1
answer
Why cnvkit genemetrics command default threshold is 0.2?
cnvkit written 10 months ago by MatthewP • 390 • updated 10 months ago by ATpoint ♦ 30k
0
votes
1
answer
339
views
1
answer
Can CVNkit call CNV correctly at HLA genes region?
cnvkit wes hla written 10 months ago by MatthewP • 390 • updated 10 months ago by linouhao • 0
0
votes
2
answers
603
views
2
answers
CNVkit output problem: Is "log2" the same as "Seg_mean"? OR how can I get "Seg_mean" with "log2"?
seg_mean cnvkit cnv written 13 months ago by Laven9 • 0 • updated 10 months ago by Eric T. • 2.6k
0
votes
1
answer
504
views
1
answer
I got a problem with making normal reference using cnvkit
paired-wgs cnvkit normal-reference written 10 months ago by prosium • 0 • updated 10 months ago by Eric T. • 2.6k
<prev • 104 results • page 1 of 4 • next >
Recent Votes
Recent Locations • All »
  • United States, 3 minutes ago
  • USA, 5 minutes ago
  • pune, India, 9 minutes ago
  • Manipal School of Life Science, 11 minutes ago
Recent Awards • All »
Recent Replies
Content
Help
Access
Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 608 users visited in the last hour