Showing: cnvkitreset
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How to get the range of LOH?
cnvkit written 4 days ago by Tonny10 • updated 1 day ago by Eric T.1.8k
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Understanding Weight column in .cns files in cnvkit
cnvkit weight call written 13 days ago by ingrid.schulman0 • updated 12 days ago by Eric T.1.8k
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Problems using cnvkit for ctDNA targeted sequencing
cnvkit ctdna results written 18 days ago by ingrid.schulman0 • updated 16 days ago by Eric T.1.8k
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Recurrent Segmentation Errors
cnvkit written 12 weeks ago by AndyW0 • updated 5 weeks ago by Eric T.1.8k
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"Shifted" copy number ratios coming from cnvkit?
cnvkit somatic copy number written 9 weeks ago by gil.hornung30 • updated 5 weeks ago by Eric T.1.8k
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Question about run cnvkit on DNAnexus
cnvkit snp dnanexus written 10 weeks ago by qyang20 • updated 5 weeks ago by Eric T.1.8k
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5 follow
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CNV detection of single cell genome sequencing
cnvkit single cell genome sequencing cnv written 5 weeks ago by Tonny10 • updated 5 weeks ago by Eric T.1.8k
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Using THETA2 from CNVkit: what king of vcf do you need?
cnvkit tumor purity theta2 written 3 months ago by gil.hornung30 • updated 3 months ago by Eric T.1.8k
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CNVkit reference.cnn .cnr .cns log ratio
cnvkit cnv written 3 months ago by nina.naitatmane10 • updated 3 months ago by Eric T.1.8k
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How to add a legend to the heatmap?
cnvkit written 6 months ago by gil.hornung30
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Explications about call function of CNVkit
cnvkit call written 5 months ago by alice.choury50 • updated 5 months ago by Eric T.1.8k
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Error 1: NULL byte detected when trying to segment by PSCBS
exome cnvkit copy number segment written 5 months ago by nbay130 • updated 5 months ago by Eric T.1.8k
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CNVkit Segments vs Bins
exome cnvkit copy number segment written 5 months ago by Lauren10 • updated 5 months ago by Eric T.1.8k
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How is the "weight" calculated by CNVkit ?
cnvkit weight cnv written 5 months ago by alice.choury50 • updated 5 months ago by Eric T.1.8k
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285
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How to export CNVkit results into PyClone?
cnvkit pyclone written 6 months ago by Jokhe40 • updated 6 months ago by Eric T.1.8k
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No call for exomes analysis
exome cnvkit written 6 months ago by alice.choury50 • updated 6 months ago by Eric T.1.8k
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Understanding coverage command
cnvkit written 6 months ago by deber19800 • updated 6 months ago by Eric T.1.8k
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Draw centromere on chromosome scatter plot
cnvkit plot cnv somatic written 7 months ago by alice.choury50 • updated 7 months ago by Eric T.1.8k
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CNVkit and Ion Torrent Data - Targeted Sequencing
ion torrent cnvkit cnv written 7 months ago by quantrum750 • updated 7 months ago by Eric T.1.8k
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cnvkit output understanding
cnvkit cnv written 7 months ago by runnerbio8850
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CNVkit : small CNV calling
cnvkit single-exon cnv written 9 months ago by alice.choury50 • updated 8 months ago by Eric T.1.8k
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Questions about creating my_antitargets.bed
cnvkit antitarget cnv capture written 10 months ago by alice.choury50 • updated 9 months ago by Eric T.1.8k
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545
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Help on understanding CNVkit CN1/CN2
cnvkit written 10 months ago by phusion0
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cnvkit example data
cnvkit bam cnv written 15 months ago by laxvid10 • updated 12 months ago by Akliao0
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CNVkit: CSV error when testing installation
cnvkit written 13 months ago by opm0 • updated 13 months ago by Eric T.1.8k
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