Showing: cnvkitreset
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confused about how to run pipeline
cnvkit written 12 days ago by andrew.lamb0 • updated 12 days ago by toralmanvar290
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CNV details about the normal samples?
cnvkit cnv written 17 days ago by kvn95ss0 • updated 17 days ago by toralmanvar290
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cnvkit example data
cnvkit bam cnv written 2.0 years ago by laxvid10 • updated 10 weeks ago by Biostar ♦♦ 20
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Regarding Cnvkit analysis
cnvkit written 3 months ago by DL10 • updated 3 months ago by Eric T.2.1k
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CNVkit - how many normal samples do I need for the pooled normal reference?
genome cnvkit written 3 months ago by ibphuangchen10 • updated 3 months ago by Eric T.2.1k
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CNVKit - Gene labels in 'diagram'
cnvkit cnv calling written 3 months ago by asjannu0 • updated 3 months ago by Eric T.2.1k
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tumor/normal WGS with CNVkit has many small segments with small copy number changes
cnvkit cnv wgs written 3 months ago by swheelan10 • updated 3 months ago by Eric T.2.1k
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CNVKIT import errors
cnvkit python cnv linux written 3 months ago by alons250 • updated 3 months ago by Eric T.2.1k
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How to merge CNV of multiple samples from CNVkit
cnvkit cnv written 5 months ago by cc10 • updated 5 months ago by Eric T.2.1k
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cnvkit segmetrics on multiple files
cnvkit cnv written 6 months ago by adoak10
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Is cnvkit coverage output split into non-overlapping segments?
exome cnvkit coverage written 7 months ago by fbrundu260 • updated 6 months ago by Eric T.2.1k
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How to assess confidence of cnvkit calls
cnvkit cnv written 7 months ago by phusion0 • updated 6 months ago by Kevin Blighe19k
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CNVkit calling strategies with matched-normal tumor
cnvkit whole-exome copy-number-variation written 7 months ago by fbrundu260 • updated 7 months ago by Kevin Blighe19k
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How to import the output of CNVkit into GISTIC2.0 ?
cnvkit gistic2.0 written 8 months ago by Tonny20 • updated 8 months ago by Eric T.2.1k
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CNVkit for germline samples
cnvkit next-gen targetsequencing germline written 8 months ago by merella.stefania0 • updated 8 months ago by Eric T.2.1k
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Error due to annotation file while running target module from CNVkit tool
exome cnvkit cnv sequencing written 8 months ago by arta450 • updated 8 months ago by Eric T.2.1k
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How to get the range of LOH?
cnvkit written 9 months ago by Tonny20 • updated 9 months ago by Eric T.2.1k
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Understanding Weight column in .cns files in cnvkit
cnvkit weight call written 9 months ago by ingrid.schulman0 • updated 9 months ago by Eric T.2.1k
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Problems using cnvkit for ctDNA targeted sequencing
cnvkit ctdna results written 9 months ago by ingrid.schulman0 • updated 9 months ago by Eric T.2.1k
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Recurrent Segmentation Errors
cnvkit written 12 months ago by AndyW0 • updated 10 months ago by Eric T.2.1k
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"Shifted" copy number ratios coming from cnvkit?
cnvkit somatic copy number written 11 months ago by gil.hornung60 • updated 10 months ago by Eric T.2.1k
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Question about run cnvkit on DNAnexus
cnvkit snp dnanexus written 11 months ago by qyang20 • updated 10 months ago by Eric T.2.1k
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CNV detection of single cell genome sequencing
cnvkit single cell genome sequencing cnv written 10 months ago by Tonny20 • updated 10 months ago by Eric T.2.1k
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Using cnvkit for targeted amplicon sequencing
cnvkit targeted amplicon sequencing reference cnv written 11 months ago by ingrid.schulman0 • updated 10 months ago by Eric T.2.1k
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Using THETA2 from CNVkit: what king of vcf do you need?
cnvkit tumor purity theta2 written 12 months ago by gil.hornung60 • updated 12 months ago by Eric T.2.1k
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CNVkit reference.cnn .cnr .cns log ratio
cnvkit cnv written 12 months ago by nina.naitatmane20 • updated 12 months ago by Eric T.2.1k
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