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<prev • 62 results • page 1 of 3 • next >
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Best variant caller for CNVkit
cnvkit written 13 days ago by milos-91 • 0 • updated 12 days ago by Eric T. • 2.2k
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539
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How to get the range of LOH?
cnvkit written 12 months ago by Tonny • 20 • updated 28 days ago by Shixiang • 20
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92
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scatter plots with single chromosome gives IndexError
cnvkit bcbio written 5 weeks ago by fenrir.sivar • 0
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108
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CNVkit: gene results not in output
cnvkit written 8 weeks ago by Lauren • 20 • updated 6 weeks ago by Eric T. • 2.2k
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143
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minus integer copy number when using --purity for cnvkit
cnvkit written 8 weeks ago by xiaoqiaoliu • 0 • updated 8 weeks ago by Eric T. • 2.2k
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155
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Using CNVkit to identify poor-quality normal samples
cnvkit written 12 weeks ago by Andy Lee • 20 • updated 12 weeks ago by Eric T. • 2.2k
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Is there a way to plot both tumor and normal samples' copy number segments on the same plot using CNVkit scatter
cnvkit written 4 months ago by asjannu • 0 • updated 3 months ago by Eric T. • 2.2k
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confused about how to run pipeline
cnvkit written 3 months ago by andrew.lamb • 0 • updated 3 months ago by toralmanvar • 510
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174
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CNV details about the normal samples?
cnvkit cnv written 3 months ago by kvn95ss • 0 • updated 3 months ago by toralmanvar • 510
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240
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Is there a way to use CNVkit without a reference from normal samples?
cnvkit sequence written 4 months ago by leandro.bispo.oliveira • 0 • updated 4 months ago by h.mon ♦ 18k
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cnvkit example data
cnvkit bam cnv written 2.3 years ago by laxvid • 10 • updated 5 months ago by Biostar ♦♦ 20
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340
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Regarding Cnvkit analysis
cnvkit written 6 months ago by DL • 10 • updated 6 months ago by Eric T. • 2.2k
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CNVkit - how many normal samples do I need for the pooled normal reference?
genome cnvkit written 6 months ago by ibphuangchen • 10 • updated 6 months ago by Eric T. • 2.2k
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CNVKit - Gene labels in 'diagram'
cnvkit cnv calling written 6 months ago by asjannu • 0 • updated 6 months ago by Eric T. • 2.2k
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476
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tumor/normal WGS with CNVkit has many small segments with small copy number changes
cnvkit cnv wgs written 6 months ago by swheelan • 10 • updated 6 months ago by Eric T. • 2.2k
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CNVKIT import errors
cnvkit python cnv linux written 7 months ago by alons • 260 • updated 6 months ago by Eric T. • 2.2k
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How to merge CNV of multiple samples from CNVkit
cnvkit cnv written 8 months ago by cc • 10 • updated 8 months ago by Eric T. • 2.2k
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cnvkit segmetrics on multiple files
cnvkit cnv written 9 months ago by adoak • 10
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Is cnvkit coverage output split into non-overlapping segments?
exome cnvkit coverage written 10 months ago by fbrundu • 260 • updated 9 months ago by Eric T. • 2.2k
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495
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How to assess confidence of cnvkit calls
cnvkit cnv written 10 months ago by phusion • 0 • updated 9 months ago by Kevin Blighe ♦ 26k
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453
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CNVkit calling strategies with matched-normal tumor
cnvkit whole-exome copy-number-variation written 10 months ago by fbrundu • 260 • updated 10 months ago by Kevin Blighe ♦ 26k
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How to import the output of CNVkit into GISTIC2.0 ?
cnvkit gistic2.0 written 11 months ago by Tonny • 20 • updated 11 months ago by Eric T. • 2.2k
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CNVkit for germline samples
cnvkit next-gen targetsequencing germline written 11 months ago by merella.stefania • 0 • updated 11 months ago by Eric T. • 2.2k
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Error due to annotation file while running target module from CNVkit tool
exome cnvkit cnv sequencing written 11 months ago by arta • 520 • updated 11 months ago by Eric T. • 2.2k
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546
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Using CNVkit for hybrid capture data -- the huge CNV regions in results does not make any sense
cnvkit hybrid capture cnv written 12 months ago by wujunjames • 0 • updated 11 months ago by Eric T. • 2.2k
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Understanding Weight column in .cns files in cnvkit
cnvkit weight call written 12 months ago by ingrid.schulman • 0 • updated 12 months ago by Eric T. • 2.2k
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644
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Problems using cnvkit for ctDNA targeted sequencing
cnvkit ctdna results written 12 months ago by ingrid.schulman • 0 • updated 12 months ago by Eric T. • 2.2k
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Recurrent Segmentation Errors
cnvkit written 15 months ago by AndyW • 0 • updated 13 months ago by Eric T. • 2.2k
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"Shifted" copy number ratios coming from cnvkit?
cnvkit somatic copy number written 14 months ago by gil.hornung • 60 • updated 13 months ago by Eric T. • 2.2k
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Question about run cnvkit on DNAnexus
cnvkit snp dnanexus written 14 months ago by qyang • 20 • updated 13 months ago by Eric T. • 2.2k
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