Latest
Open
RNA-Seq
ChIP-Seq
SNP
Assembly
Tutorials
Tools
Jobs
Forum
Planet
All »
Home
Log In
Showing: cnvkit • reset
or   Classic search
<prev • 89 results • page 1 of 3 • next >
4
votes
0
answers
105
views
0
answers
CNVKit scatter graph will not plot individual chromosomes
cnvkit.py cnvkit cnv cnvkit.py scatter written 13 days ago by omg what am I doing • 60
0
votes
0
answers
56
views
0
answers
cnvkit filtering low depth bins
exome cnvkit exome capture written 16 days ago by pzratnog89 • 0
1
vote
1
answer
159
views
1
answer
how to adjust the length of y axis
cnvkit cnv heatmap written 23 days ago by shengkeyuan111 • 0 • updated 23 days ago by SMK • 1.4k
0
votes
1
answer
108
views
1
answer
How to get actual location of CNV from CNVKit
cnvkit cnv wgs written 29 days ago by rabio • 0 • updated 29 days ago by MatthewP • 110
0
votes
0
answers
80
views
0
answers
Weights in cnvkit cnr output
cnvkit written 5 weeks ago by biologist • 10
1
vote
0
answers
125
views
0
answers
Noisy germline CNV data using CNVKit
cnvkit copy number variation germline cnv gcnv written 5 weeks ago by omg what am I doing • 60
2
votes
1
answer
134
views
1
answer
Adding IDT CNV Backbone Spike-in to Small Targeted Panel for CNV Calling With CNVkit
targeted cnvkit panel cnv written 6 weeks ago by erikt • 0 • updated 6 weeks ago by markus.riester • 470
0
votes
1
answer
126
views
1
answer
No CNV calls in CNVkit import-rna
cnvkit import-rna written 8 weeks ago by a.v.vliet • 0 • updated 7 weeks ago by Eric T. • 2.5k
5
votes
1
answer
183
views
1
answer
Passing cnvkit output to pureCN to account for cellularity
cnvkit purecn written 8 weeks ago by biologist • 10 • updated 8 weeks ago by markus.riester • 470
2
votes
2
answers
268
views
2
answers
CNVkit for somatic copy number detection
exome cnvkit wes cnv written 10 weeks ago by stephaniem • 0
2
votes
1
answer
123
views
1
answer
Why cnvkit genemetrics command default threshold is 0.2?
cnvkit written 8 weeks ago by MatthewP • 110 • updated 8 weeks ago by ATpoint ♦ 18k
0
votes
1
answer
133
views
1
answer
Can CVNkit call CNV correctly at HLA genes region?
cnvkit wes hla written 8 weeks ago by MatthewP • 110 • updated 8 weeks ago by linouhao • 0
0
votes
2
answers
295
views
2
answers
CNVkit output problem: Is "log2" the same as "Seg_mean"? OR how can I get "Seg_mean" with "log2"?
seg_mean cnvkit cnv written 4 months ago by Laven9 • 0 • updated 9 weeks ago by Eric T. • 2.5k
0
votes
1
answer
179
views
1
answer
I got a problem with making normal reference using cnvkit
paired-wgs cnvkit normal-reference written 9 weeks ago by prosium • 0 • updated 9 weeks ago by Eric T. • 2.5k
1
vote
4
answers
710
views
4
answers
scatter plots with single chromosome gives IndexError
cnvkit bcbio written 11 months ago by fenrir.sivar • 0 • updated 10 weeks ago by joseph.fass • 10
0
votes
0
answers
156
views
0
answers
'ValueError: No usable data points to plot out of 0 probes, 0 segments, 0 variants' in Scatter Plot
cnvkit written 4 months ago by wei.wei • 10 • updated 10 weeks ago by Biostar ♦♦ 20
1
vote
0
answers
194
views
0
answers
Problems wth cnvkit scatter for genes
cnvkit written 10 weeks ago by biologist • 10 • updated 10 weeks ago by h.mon ♦ 26k
5
votes
0
answers
275
views
0
answers
Installation error CNVkit: could not find the executable 'Rscript'
cnvkit written 3 months ago by F • 3.4k
2
votes
1
answer
278
views
1
answer
CNVkit: Choice of Bin Size and CNV Calling
cnvkit genemetrics written 3 months ago by wei.wei • 10 • updated 3 months ago by Chris Miller ♦ 20k
1
vote
1
answer
324
views
1
answer
CNVkit: Dealing with noisy tumor samples
cnvkit written 4 months ago by Fil • 0 • updated 4 months ago by Eric T. • 2.5k
0
votes
1
answer
269
views
1
answer
CNVkit Heatmap samples clustering
cnvkit cnv clustering heatmap written 4 months ago by jim.paredes • 0 • updated 4 months ago by Eric T. • 2.5k
1
vote
1
answer
220
views
1
answer
Error in CNV Calling with Annotation
cnvkit written 4 months ago by wei.wei • 10 • updated 4 months ago by Eric T. • 2.5k
0
votes
1
answer
263
views
1
answer
Annotation tool for cnvKit
cnvkit cnvscan cnv written 6 months ago by carolina.naomi • 0 • updated 6 months ago by geocarvalho • 110
0
votes
1
answer
252
views
1
answer
How to deside gene CNVs from .cnr outputs
cnvkit written 7 months ago by guisongtao0104 • 0 • updated 6 months ago by nick • 100
2
votes
0
answers
390
views
0
answers
cnvkit flasso interrupt
exome cnvkit written 9 months ago by gab • 20
15
votes
1
answer
3.8k
views
1
answer
Help with understanding CNVkit output
cnvkit ngs cnv cancer written 3.3 years ago by alons • 270 • updated 9 months ago by RamRS ♦ 22k
2
votes
1
answer
496
views
1
answer
CNVkit import-rna : calculate cnv expression correlation using cBioportal
cnvkit rna-seq written 9 months ago by noodle • 30
1
vote
0
answers
361
views
0
answers
Error : run cnvkit from bam
software error cnvkit written 9 months ago by reany • 0 • updated 9 months ago by finswimmer ♦ 11k
0
votes
1
answer
296
views
1
answer
Running cnvkit batch with -y parameter
cnvkit next-gen copynumber sequencing written 9 months ago by alyza • 0 • updated 9 months ago by Eric T. • 2.5k
2
votes
1
answer
454
views
1
answer
Best variant caller for CNVkit
cnvkit written 10 months ago by milos-91 • 10 • updated 10 months ago by Eric T. • 2.5k
<prev • 89 results • page 1 of 3 • next >
Recent Votes
Recent Locations • All »
  • Spain, 1 minute ago
  • United States, 2 minutes ago
  • New York, USA, 3 minutes ago
  • United Kingdom, 3 minutes ago
Recent Awards • All »
Recent Replies
Content
Help
Access
Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 1467 users visited in the last hour