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<prev • 115 results • page 1 of 4 • next >
2
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CNVkit with tumor only bam and flat reference
cnvkit tumor cnv written 13 days ago by youki • 0 • updated 12 days ago by genomax ♦ 85k
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2
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1.3k
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2
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Format of VCF for CNVkit call fonction and results
vcf cnvkit format cnv written 3.6 years ago by Hällyss • 50 • updated 13 days ago by Biostar ♦♦ 20
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66
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how to set the number of segments?
cnvkit written 25 days ago by leovam173 • 0
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89
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CNV calling on WGS only on gene positions
cnvkit cnvcalling cnvs written 7 weeks ago by pabloatienzalo • 0 • updated 7 weeks ago by RamRS ♦ 27k
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2
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236
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6 follow
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CNVKit noisy scatter plot
cnvkit copy number profile cnv on wes data cnv written 8 weeks ago by tanbiswas6 • 0 • updated 7 weeks ago by Eugene A • 30
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Tool: CNVkit, robust genome-wide copy number detection from DNA sequencing
sv python tool cnv cnvkit written 5.0 years ago by Eric T. • 2.6k • updated 8 weeks ago by tanbiswas6 • 0
1
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190
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0
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Help with the CNVkit analysis
cnvkit written 12 weeks ago by kaurravneet4123 • 10
2
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1
answer
145
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1
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How do you know the best segments in cnvkit after filtering?
cnvkit cnv wgs written 12 weeks ago by Jordan • 1.1k • updated 12 weeks ago by brunobsouzaa • 180
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1
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181
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1
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The center in scatter plot generated by CNVkit looks off
scatter-plot cnvkit wgs written 3 months ago by Jordan • 1.1k • updated 3 months ago by d-cameron • 2.2k
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7 follow
1
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ImportError: cannot import name zip_longest
cnvkit written 8 months ago by russell.stewart.j • 0 • updated 3 months ago by moldach • 130
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110
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Analysis using CNVkit tool
cnvkit written 3 months ago by kaurravneet4123 • 10
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0
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121
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0
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How to understand CNVkit output (.cnr, .cns)
cnvkit written 3 months ago by 2yuna710 • 10 • updated 3 months ago by lakhujanivijay ♦ 5.1k
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179
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How are the log2 values in CNVkit .cnr files calculated?
cnvkit .cnr cnv wgs written 3 months ago by Jordan • 1.1k
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128
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1
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how to get a male reference when using cnvkit.py batch command
gene cnvkit written 3 months ago by guofengwang123 • 0 • updated 3 months ago by officialoxybreath • 0
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116
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Flat reference vs. pooled reference (unknown target files)
cnvkit written 4 months ago by newbio17 • 110
2
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2
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2
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Noisy germline CNV data using CNVKit
cnvkit copy number variation germline cnv gcnv written 14 months ago by omg what am I doing • 70 • updated 4 months ago by sutturka • 170
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1
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190
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1
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CNVKit interpretation of results?
cnvkit written 5 months ago by vctrm67 • 10 • updated 5 months ago by jared.andrews07 ♦ 6.2k
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242
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cnvkit Error message "length of weights should be the same as the number of probes Execution halted"
cnvkit sequencing written 6 months ago by lhaiyan3 • 40 • updated 6 months ago by Medhat ♦ 8.7k
1
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280
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how to use output of cnvkit to plot
R cnvkit written 6 months ago by guofengwang123 • 0 • updated 6 months ago by genomax ♦ 85k
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264
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how to understand output form from CNVkit
wgs cnv cnvkit written 7 months ago by prosium • 0
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2
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5.0k
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2
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Help with understanding CNVkit output
cnvkit ngs cnv cancer written 4.4 years ago by alons • 270 • updated 8 months ago by linouhao • 0
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193
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Error segmentation steps
cnvkit written 8 months ago by Hällyss • 50 • updated 8 months ago by ATpoint ♦ 36k
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212
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How to use CNVKit
cnvkit written 8 months ago by vctrm67 • 10
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1
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385
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1
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BAF without normal control, to do or not! or how
cnvkit baf theta no controls theta2 written 11 months ago by sm.hashemin • 90 • updated 9 months ago by zhouyangyu • 0
0
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291
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Problem with CNVkit using samples with single-end sequenced WES
genome cnvkit next-gen sequencing written 10 months ago by tangya1982 • 0 • updated 10 months ago by Kevin Blighe ♦ 61k
2
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1
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553
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1
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CNVKIT - unable to produce scatter and diagram pdfs
cnvkit written 12 months ago by ww22runner • 0 • updated 10 months ago by Eric T. • 2.6k
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334
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0
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Are SV tools as thorough in CNV detection as CNVkit?
sv cnvkit parliament manta cnv written 11 months ago by syntax • 60
0
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336
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0
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modifying CNV plots (scatter plot)
cnvkit scatter_plot cnv written 11 months ago by suhye • 0 • updated 11 months ago by lakhujanivijay ♦ 5.1k
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2
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284
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CNVkit - diagram problem
cnvkit written 11 months ago by bioinformatica • 0
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1
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467
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1
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Weights in cnvkit cnr output
cnvkit written 14 months ago by biologist • 10 • updated 11 months ago by Eric T. • 2.6k
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