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CNVkit with tumor only bam and flat reference
cnvkit tumor cnv written 13 days ago by youki0 • updated 12 days ago by genomax85k
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Format of VCF for CNVkit call fonction and results
vcf cnvkit format cnv written 3.6 years ago by Hällyss50 • updated 13 days ago by Biostar ♦♦ 20
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how to set the number of segments?
cnvkit written 25 days ago by leovam1730
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CNV calling on WGS only on gene positions
cnvkit cnvcalling cnvs written 7 weeks ago by pabloatienzalo0 • updated 7 weeks ago by RamRS27k
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236
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6 follow
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CNVKit noisy scatter plot
cnvkit copy number profile cnv on wes data cnv written 8 weeks ago by tanbiswas60 • updated 7 weeks ago by Eugene A30
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Tool: CNVkit, robust genome-wide copy number detection from DNA sequencing
sv python tool cnv cnvkit written 5.0 years ago by Eric T.2.6k • updated 8 weeks ago by tanbiswas60
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190
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Help with the CNVkit analysis
cnvkit written 12 weeks ago by kaurravneet412310
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145
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1
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How do you know the best segments in cnvkit after filtering?
cnvkit cnv wgs written 12 weeks ago by Jordan1.1k • updated 12 weeks ago by brunobsouzaa180
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1
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The center in scatter plot generated by CNVkit looks off
scatter-plot cnvkit wgs written 3 months ago by Jordan1.1k • updated 3 months ago by d-cameron2.2k
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7 follow
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ImportError: cannot import name zip_longest
cnvkit written 8 months ago by russell.stewart.j0 • updated 3 months ago by moldach130
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Analysis using CNVkit tool
cnvkit written 3 months ago by kaurravneet412310
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121
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How to understand CNVkit output (.cnr, .cns)
cnvkit written 3 months ago by 2yuna71010 • updated 3 months ago by lakhujanivijay5.1k
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179
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how to get a male reference when using cnvkit.py batch command
gene cnvkit written 3 months ago by guofengwang1230 • updated 3 months ago by officialoxybreath0
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Noisy germline CNV data using CNVKit
cnvkit copy number variation germline cnv gcnv written 14 months ago by omg what am I doing70 • updated 4 months ago by sutturka170
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190
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CNVKit interpretation of results?
cnvkit written 5 months ago by vctrm6710 • updated 5 months ago by jared.andrews076.2k
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242
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how to use output of cnvkit to plot
R cnvkit written 6 months ago by guofengwang1230 • updated 6 months ago by genomax85k
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Help with understanding CNVkit output
cnvkit ngs cnv cancer written 4.4 years ago by alons270 • updated 8 months ago by linouhao0
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Error segmentation steps
cnvkit written 8 months ago by Hällyss50 • updated 8 months ago by ATpoint36k
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How to use CNVKit
cnvkit written 8 months ago by vctrm6710
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385
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BAF without normal control, to do or not! or how
cnvkit baf theta no controls theta2 written 11 months ago by sm.hashemin90 • updated 9 months ago by zhouyangyu0
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291
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CNVKIT - unable to produce scatter and diagram pdfs
cnvkit written 12 months ago by ww22runner0 • updated 10 months ago by Eric T.2.6k
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336
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modifying CNV plots (scatter plot)
cnvkit scatter_plot cnv written 11 months ago by suhye0 • updated 11 months ago by lakhujanivijay5.1k
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CNVkit - diagram problem
cnvkit written 11 months ago by bioinformatica0
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Weights in cnvkit cnr output
cnvkit written 14 months ago by biologist10 • updated 11 months ago by Eric T.2.6k
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