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<prev • 72 results • page 1 of 3 • next >
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CNVkit: Dealing with noisy tumor samples
cnvkit written 7 days ago by Fil • 0 • updated 18 hours ago by Eric T. • 2.3k
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78
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1
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CNVkit Heatmap samples clustering
cnvkit cnv clustering heatmap written 6 days ago by jim.paredes • 0 • updated 18 hours ago by Eric T. • 2.3k
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59
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Error in CNV Calling with Annotation
cnvkit written 2 days ago by wei.wei • 0 • updated 18 hours ago by Eric T. • 2.3k
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CNVkit output problem: Is "log2" the same as "Seg_mean"? OR how can I get "Seg_mean" with "log2"?
seg_mean cnvkit cnv written 19 days ago by 948077241 • 0
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155
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Annotation tool for cnvKit
cnvkit cnvscan cnv written 11 weeks ago by carolina.naomi • 0 • updated 11 weeks ago by geocarvalho • 80
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160
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1
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How to deside gene CNVs from .cnr outputs
cnvkit written 3 months ago by guisongtao0104 • 0 • updated 11 weeks ago by nick • 90
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403
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1
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scatter plots with single chromosome gives IndexError
cnvkit bcbio written 7 months ago by fenrir.sivar • 0 • updated 3 months ago by biokoala ♦ 3.6k
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248
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cnvkit flasso interrupt
exome cnvkit written 5 months ago by gab • 20
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3.3k
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1
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Help with understanding CNVkit output
cnvkit ngs cnv cancer written 3.0 years ago by alons • 270 • updated 5 months ago by RamRS ♦ 20k
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1
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286
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1
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CNVkit import-rna : calculate cnv expression correlation using cBioportal
cnvkit rna-seq written 5 months ago by noodle • 30
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249
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Error : run cnvkit from bam
software error cnvkit written 5 months ago by reany • 0 • updated 5 months ago by finswimmer ♦ 9.8k
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1
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198
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1
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Running cnvkit batch with -y parameter
cnvkit next-gen copynumber sequencing written 5 months ago by alyza • 0 • updated 5 months ago by Eric T. • 2.3k
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334
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Best variant caller for CNVkit
cnvkit written 6 months ago by milos-91 • 10 • updated 6 months ago by Eric T. • 2.3k
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2
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730
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How to get the range of LOH?
cnvkit written 18 months ago by Tonny • 20 • updated 6 months ago by Shixiang • 30
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247
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CNVkit: gene results not in output
cnvkit written 7 months ago by Lauren • 30 • updated 7 months ago by Eric T. • 2.3k
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2
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344
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2
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minus integer copy number when using --purity for cnvkit
cnvkit written 8 months ago by xiaoqiaoliu • 0 • updated 7 months ago by Eric T. • 2.3k
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1
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303
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1
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Using CNVkit to identify poor-quality normal samples
cnvkit written 8 months ago by Andy Lee • 10 • updated 8 months ago by Eric T. • 2.3k
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1
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363
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Is there a way to plot both tumor and normal samples' copy number segments on the same plot using CNVkit scatter
cnvkit written 10 months ago by asjannu • 0 • updated 9 months ago by Eric T. • 2.3k
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2
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5 follow
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confused about how to run pipeline
cnvkit written 9 months ago by andrew.lamb • 0 • updated 9 months ago by toralmanvar • 750
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1
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316
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1
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CNV details about the normal samples?
cnvkit cnv written 9 months ago by kvn95ss • 0 • updated 9 months ago by toralmanvar • 750
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1
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470
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Is there a way to use CNVkit without a reference from normal samples?
cnvkit sequence written 10 months ago by leandro.bispo.oliveira • 0 • updated 10 months ago by h.mon ♦ 23k
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cnvkit example data
cnvkit bam cnv written 2.7 years ago by laxvid • 10 • updated 11 months ago by Biostar ♦♦ 20
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602
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Regarding Cnvkit analysis
cnvkit written 12 months ago by DL • 10 • updated 12 months ago by Eric T. • 2.3k
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858
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CNVkit - how many normal samples do I need for the pooled normal reference?
genome cnvkit written 12 months ago by ibphuangchen • 10 • updated 12 months ago by Eric T. • 2.3k
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315
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1
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CNVKit - Gene labels in 'diagram'
cnvkit cnv calling written 12 months ago by asjannu • 0 • updated 12 months ago by Eric T. • 2.3k
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1
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736
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1
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tumor/normal WGS with CNVkit has many small segments with small copy number changes
cnvkit cnv wgs written 12 months ago by swheelan • 10 • updated 12 months ago by Eric T. • 2.3k
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CNVKIT import errors
cnvkit python cnv linux written 13 months ago by alons • 270 • updated 12 months ago by Eric T. • 2.3k
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729
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How to merge CNV of multiple samples from CNVkit
cnvkit cnv written 14 months ago by cc • 10 • updated 14 months ago by Eric T. • 2.3k
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2
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cnvkit segmetrics on multiple files
cnvkit cnv written 15 months ago by adoak • 10
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Is cnvkit coverage output split into non-overlapping segments?
exome cnvkit coverage written 16 months ago by fbrundu • 280 • updated 15 months ago by Eric T. • 2.3k
<prev • 72 results • page 1 of 3 • next >
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