Showing: cnvkitreset
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CNVkit calling strategies with matched-normal tumor
cnvkit whole-exome copy-number-variation written 7 days ago by fbrundu250 • updated 6 days ago by Kevin Blighe3.0k
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160
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1
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How to import the output of CNVkit into GISTIC2.0 ?
cnvkit gistic2.0 written 4 weeks ago by Tonny20 • updated 4 weeks ago by Eric T.1.9k
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CNVkit for germline samples
cnvkit next-gen targetsequencing germline written 4 weeks ago by merella.stefania0 • updated 4 weeks ago by Eric T.1.9k
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191
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Error due to annotation file while running target module from CNVkit tool
exome cnvkit cnv sequencing written 6 weeks ago by arta0 • updated 6 weeks ago by Eric T.1.9k
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How to get the range of LOH?
cnvkit written 8 weeks ago by Tonny20 • updated 8 weeks ago by Eric T.1.9k
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Understanding Weight column in .cns files in cnvkit
cnvkit weight call written 9 weeks ago by ingrid.schulman0 • updated 9 weeks ago by Eric T.1.9k
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225
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Problems using cnvkit for ctDNA targeted sequencing
cnvkit ctdna results written 10 weeks ago by ingrid.schulman0 • updated 10 weeks ago by Eric T.1.9k
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Recurrent Segmentation Errors
cnvkit written 4 months ago by AndyW0 • updated 3 months ago by Eric T.1.9k
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235
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"Shifted" copy number ratios coming from cnvkit?
cnvkit somatic copy number written 4 months ago by gil.hornung50 • updated 3 months ago by Eric T.1.9k
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Question about run cnvkit on DNAnexus
cnvkit snp dnanexus written 4 months ago by qyang20 • updated 3 months ago by Eric T.1.9k
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5 follow
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CNV detection of single cell genome sequencing
cnvkit single cell genome sequencing cnv written 3 months ago by Tonny20 • updated 3 months ago by Eric T.1.9k
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Using THETA2 from CNVkit: what king of vcf do you need?
cnvkit tumor purity theta2 written 5 months ago by gil.hornung50 • updated 5 months ago by Eric T.1.9k
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239
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CNVkit reference.cnn .cnr .cns log ratio
cnvkit cnv written 5 months ago by nina.naitatmane10 • updated 5 months ago by Eric T.1.9k
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1
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How to add a legend to the heatmap?
cnvkit written 8 months ago by gil.hornung50
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1
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Explications about call function of CNVkit
cnvkit call written 7 months ago by alice.choury50 • updated 7 months ago by Eric T.1.9k
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1
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Error 1: NULL byte detected when trying to segment by PSCBS
exome cnvkit copy number segment written 7 months ago by nbay130 • updated 7 months ago by Eric T.1.9k
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CNVkit Segments vs Bins
exome cnvkit copy number segment written 7 months ago by Lauren10 • updated 7 months ago by Eric T.1.9k
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How is the "weight" calculated by CNVkit ?
cnvkit weight cnv written 7 months ago by alice.choury50 • updated 7 months ago by Eric T.1.9k
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How to export CNVkit results into PyClone?
cnvkit pyclone written 8 months ago by Jokhe40 • updated 8 months ago by Eric T.1.9k
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No call for exomes analysis
exome cnvkit written 8 months ago by alice.choury50 • updated 8 months ago by Eric T.1.9k
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Understanding coverage command
cnvkit written 8 months ago by deber19800 • updated 8 months ago by Eric T.1.9k
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1
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Draw centromere on chromosome scatter plot
cnvkit plot cnv somatic written 9 months ago by alice.choury50 • updated 9 months ago by Eric T.1.9k
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CNVkit and Ion Torrent Data - Targeted Sequencing
ion torrent cnvkit cnv written 9 months ago by quantrum750 • updated 9 months ago by Eric T.1.9k
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cnvkit output understanding
cnvkit cnv written 9 months ago by runnerbio8890
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CNVkit : small CNV calling
cnvkit single-exon cnv written 10 months ago by alice.choury50 • updated 10 months ago by Eric T.1.9k
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