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4
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Tool: CNVkit, robust genome-wide copy number detection from DNA sequencing
sv python tool cnv cnvkit written 4.9 years ago by Eric T.2.6k • updated 21 days ago by tanbiswas60
15
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2
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4.9k
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2
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Help with understanding CNVkit output
cnvkit ngs cnv cancer written 4.3 years ago by alons270 • updated 7 months ago by linouhao0
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0
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6
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1
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1.9k
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1
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CNVkit Segments vs Bins
exome cnvkit copy number segment written 3.2 years ago by Lauren70 • updated 3.2 years ago by Eric T.2.6k
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1
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1
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CNV not called
cnvkit exome copy number written 4.7 years ago by vps76710
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2
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2
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Why do I get a weird copy number in the tumour?
cnvkit theta2 written 4.1 years ago by w.jaratlerdsiri10 • updated 4.0 years ago by hywg20
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3
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3
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2
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1.5k
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1
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Draw centromere on chromosome scatter plot
cnvkit plot cnv somatic written 3.4 years ago by Hällyss50 • updated 3.4 years ago by Eric T.2.6k
7
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1
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2.0k
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1
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How is the "weight" calculated by CNVkit ?
cnvkit weight cnv written 3.3 years ago by Hällyss50 • updated 3.2 years ago by Eric T.2.6k
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1
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1
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Explications about call function of CNVkit
cnvkit call written 3.2 years ago by Hällyss50 • updated 3.2 years ago by Eric T.2.6k
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1
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1
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CNVkit reference.cnn .cnr .cns log ratio
cnvkit cnv written 3.1 years ago by nina.naitatmane20 • updated 3.0 years ago by Eric T.2.6k
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2
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1.7k
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5 follow
2
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CNV detection of single cell genome sequencing
cnvkit single cell genome sequencing cnv written 2.9 years ago by Tonny20 • updated 2.9 years ago by Eric T.2.6k
2
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2
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1.2k
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2
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How to get the range of LOH?
cnvkit written 2.8 years ago by Tonny20 • updated 22 months ago by Shixiang50
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2
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1
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CNVkit for germline samples
cnvkit next-gen targetsequencing germline written 2.7 years ago by merella.stefania10 • updated 2.7 years ago by Eric T.2.6k
1
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2
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cnvkit segmetrics on multiple files
cnvkit cnv written 2.6 years ago by adoak10
10
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2
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1.5k
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2
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CNVKIT import errors
cnvkit python cnv linux written 2.4 years ago by alons270 • updated 2.4 years ago by Eric T.2.6k
2
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1
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1
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tumor/normal WGS with CNVkit has many small segments with small copy number changes
cnvkit cnv wgs written 2.4 years ago by swheelan10 • updated 2.4 years ago by Eric T.2.6k
2
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1
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675
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1
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Best variant caller for CNVkit
cnvkit written 22 months ago by milos-9110 • updated 22 months ago by Eric T.2.6k
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1
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965
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1
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3
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1
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1
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CNVkit: Choice of Bin Size and CNV Calling
cnvkit genemetrics written 15 months ago by wei.wei10 • updated 15 months ago by Chris Miller21k
5
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1
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643
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1
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Passing cnvkit output to pureCN to account for cellularity
cnvkit purecn written 13 months ago by biologist10 • updated 13 months ago by markus.riester490
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2
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580
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2
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Noisy germline CNV data using CNVKit
cnvkit copy number variation germline cnv gcnv written 12 months ago by omg what am I doing70 • updated 3 months ago by sutturka170
4
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1
answer
370
views
1
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cnvkit bgzf_read error 4 after 4 bytes
cnvkit samtools bzip written 10 months ago by sm.hashemin90 • updated 10 months ago by Eric T.2.6k
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5
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5
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CNVkit runtime for WGS?
cnvkit written 4.4 years ago by wjar67180
1
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1
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1.9k
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1
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CNVkit - Format of VCF file
cnvkit written 4.1 years ago by fongchunchan10 • updated 4.1 years ago by Eric T.2.6k
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1
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1
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Interpretation of sex chromosome ploidy using CNVKit
cnvkit sex chromosome written 4.1 years ago by andcl930 • updated 4.0 years ago by 2nelly180
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2
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cnvkit example data
cnvkit bam cnv written 4.0 years ago by laxvid10 • updated 2.2 years ago by Biostar ♦♦ 20
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1
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1
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CNVkit - Proper Way to Generate Accurate Sex Chromosome Predictions
cnvkit written 4.0 years ago by fongchunchan10 • updated 4.0 years ago by Eric T.2.6k
3
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2
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1.6k
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2
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CNVkit: Overlapping Segments?
cnvkit written 4.0 years ago by fongchunchan10
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