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written 2.0 years ago by
finswimmer ♦ 14k
• updated
2.0 years ago by
GenoMax ♦ 96k
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Recent Replies
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C: Why LASTZ Align Sequences in a So Long Time by
Joe ♦ 18k
LASTZ and BLAST are not really equivalents, they have different typical usecases. Genomax is righ...
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A: How do I add a GENSCAN track to the Ensembl Gene Summary by
Emily_Ensembl ♦ 21k
You should be able to just turn this on in the `Configure this page` menu, listed under `Predicti...
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C: Missing Gene Symbols From Mgi With Biomart (Mouse) by
Emily_Ensembl ♦ 21k
Can you send the list of ids to `helpdesk@ensembl.org` and we can look into it.
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C: VEP output has no gene names by
Emily_Ensembl ♦ 21k
Use `--symbol` with the [offline VEP](http://www.ensembl.org/info/docs/tools/vep/script/vep_optio...
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C: bowtie2 alignment error by
pt.taklifi • 60
well thats embarrassing. thank you. I will delete this post
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C: FeaturePlot using metadata columns by
fracarb8 • 100
You should include in your question how the 2 columns looks like (e.g. `head(Seurat_Amgen_10XVdj_...
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C: UCSC knownCanonical hg19 vs. hg38 by
ATpoint ♦ 46k
https://www.biostars.org/p/194633/#195091 You are not only comparing two different genome builds...
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C: how to build matrices for DeSeq 2 from salmon quan.sf files by
ATpoint ♦ 46k
DESeq2 starts from raw counts, please read the manual. tximport can read RSEM input as well.
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C: learning how to use Virsorter2 by
seidel ♦ 7.4k
First off, read the following tutorial: [How To Ask Good Questions On Technical And Scientific Fo...
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C: High log2foldchange in Deseq2 by
amenshamim • 0
Thank you for your response. In my dataset, Tumor and normal datset are not paired. For example,...
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C: Multiple alleles in REF and ALT in VCF file by
cpad0112 ♦ 15k
Instead of removing, try decomposing vcfs with Vt. Refer to the `decompose biallelic block substi...
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C: minimap2 alignment for maker by
gilsorek12 • 0
Thank you! The results were much better using AGAT.
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