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<prev • 83 results • page 1 of 3 • next >
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Question about codeml
phylogeny tree paml ds codeml written 5 weeks ago by Chvatil • 50
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99
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Phylogenetic requirements for generating dN/dS
dn/ds paml codeml written 7 weeks ago by benjamin.aaron.taylor • 0
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165
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Runmode = -2 in Biopython PAML impossible ?
python3 paml codeml biopython written 7 weeks ago by Chvatil • 50
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108
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Programme to calculate dN/dS between pair of sequences in a seq alignment
gene dn/ds sequence paml codeml written 8 weeks ago by Chvatil • 50
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CODEML: Ideal setting for generating dn/ds values for a gene family within a species.
paml codeml written 3 months ago by venura • 60
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167
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"Seq #20 occurs more than once in the tree" error from pam codeml analysis
phylogenetics paml codeml selection written 6 months ago by kathyd1994 • 0 • updated 6 months ago by Diana MoSa • 20
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147
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saturated dS values on selection study using codeml
saturation codeml written 8 months ago by Nunu • 0
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358
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how to use trimal to trim codon sequences
trimal alignment codeml written 11 months ago by Nunu • 0 • updated 9 months ago by Biostar ♦♦ 20
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185
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How to interpret codeml ?
hyphy meme paml codeml selection written 9 months ago by sahoo.sshree • 0
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Some problems about CODEML
positive selection sites paml codeml written 5.4 years ago by Ginsea Chen • 130 • updated 9 months ago by Biostar ♦♦ 20
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209
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Mutation Selection test FMutSel0-M0 (Null) FMutSel-M0 (Alternative) df=0, how to do Chi square test?
paml codeml written 13 months ago by kabir.deb0353 • 10 • updated 11 months ago by Biostar ♦♦ 20
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229
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Codon substitution model (codeml)
dnds codeml paml written 13 months ago by Chvatil • 50 • updated 11 months ago by Biostar ♦♦ 20
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Gene size and power of detection in evolutionary rates analysis
gene molecular clock paml codeml evolutionary rate written 13 months ago by pr • 10
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How can I understand Codeml assigned Internal Branch Numbers To Phylogenetic Trees from mlc file?
paml codeml written 13 months ago by kabir.deb0353 • 10
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335
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1
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Need help with codeml
purifying selection codeml written 15 months ago by rprog008 • 70 • updated 15 months ago by Brice Sarver • 3.6k
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1
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379
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Can i use consensus phylogenetic tree for calculation of dn/ds via codeml?
phylogenetic tree codeml positive selection written 22 months ago by rprog008 • 70
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266
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Codeml BEB positive sites don't match amino acids in alignment
positve selection branch-site model paml codeml written 16 months ago by maggie.bartlett • 0
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dN/dS -1, in attempt to test purifying selection, CODEML PAML
paml codeml written 19 months ago by scheng25 • 10 • updated 18 months ago by Biostar ♦♦ 20
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495
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Error: err: option file. add space around the equal sign?.
software error codeml written 20 months ago by dudka • 0 • updated 20 months ago by _r_am ♦ 32k
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CodeML Troubleshooting Help
evolution paml codeml written 6.0 years ago by p.juttyrajan • 0 • updated 21 months ago by Diana MoSa • 20
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401
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Theory question on dN/dS values for phylogeny
dnds codeml paml written 21 months ago by DNAngel • 90
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5 follow
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How to identify Substitution rate is per time unit in baseml
baseml substitution rate codeml written 22 months ago by aloke205 • 40
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335
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Need help regarding hypothesis of branch model
branch-site models codeml written 22 months ago by rprog008 • 70
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How do you run codeml for two genes in one file but with 1 species tree?
paml codeml written 22 months ago by DNAngel • 90 • updated 22 months ago by shelkmike • 310
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623
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Problem with CODEML parameters
molecular evolution codeml paml written 23 months ago by aeonswhisper • 0
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977
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Issue with running Codeml using Biopython
paml python biopython codeml linux written 2.0 years ago by laurenmee17 • 0
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Help With Understanding The Output Of Codeml From The Paml Package
paml codeml selection written 10.8 years ago by Joseph Hughes • 2.9k • updated 2.4 years ago by _r_am ♦ 32k
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PAML NsSites sequence length influences significance?
nssites paml codeml written 2.4 years ago by susannak • 0
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946
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calculating dn/ds from codeml output
codeml written 2.6 years ago by RT • 350
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Get dS numbers _per branch_ with PAML codeml (or branch length estimates)
phylogeny substitution rates paml ds codeml written 4.2 years ago by BlastedBadger • 90 • updated 2.8 years ago by al-ash • 140
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