Showing: combatreset
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9
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2
answers
9.6k
views
2
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removing batch effects using ComBat and SVA
R sva combat batch effect written 2.7 years ago by LJ170 • updated 9 days ago by Agustin Gonzalez-Vicente0
3
votes
0
answers
96
views
0
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sva combat removes wanted biological variation
R sva combat rna-seq pca written 18 days ago by exin50 • updated 18 days ago by zx87546.5k
0
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0
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148
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0
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1
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0
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94
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0
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0
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1
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188
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1
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How to remove batch effect in copy number segment mean
cna segment combat batch effect written 3 months ago by sugus30 • updated 7 weeks ago by Biostar ♦♦ 20
0
votes
1
answer
871
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1
answer
ComBat on TCGA RNAseq data generates all NAN
tcga combat written 20 months ago by mforde841.2k • updated 3 months ago by coyoung0
5
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1
answer
2.4k
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1
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Using ComBat on RNASeq FPKM counts
combat rna-seq written 2.3 years ago by ebrudermanver40 • updated 6 months ago by Kevin Blighe37k
1
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1
answer
568
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1
answer
Help with multiple batch effects
sva batch effects combat written 7 months ago by fp890 • updated 7 months ago by genomax62k
0
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1
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291
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1
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0
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1
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403
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1
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9
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1
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4.2k
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6 follow
1
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Batch effects : ComBat or removebatcheffects (limma package) ?
sva batch effects combat limma written 18 months ago by lessismore570 • updated 15 months ago by Kevin Blighe37k
3
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0
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3.6k
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0
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Error in while (change > conv) { : missing value where TRUE/FALSE needed
combat rna-seq batch effect written 16 months ago by lessismore570 • updated 16 months ago by Biostar ♦♦ 20
7
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1
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1.3k
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6 follow
1
answer
RNA-Seq Batch correction negative values
batch-effect combat scran rna-seq sva written 16 months ago by rmf540 • updated 16 months ago by Kevin Blighe37k
6
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0
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2.0k
views
5 follow
0
answers
2
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1
answer
600
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1
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Time point microarray data correcting for batch effects
combat microarray batch effect written 18 months ago by tleona310 • updated 18 months ago by mforde841.2k
0
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0
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1.3k
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0
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svaseq and combat
combat sva effect batch written 21 months ago by Folder40g110 • updated 19 months ago by Biostar ♦♦ 20
3
votes
1
answer
1.0k
views
1
answer
Converting beta value to M value (when beta=1)
dna methylation combat written 19 months ago by janhuang.cn120 • updated 19 months ago by Devon Ryan88k
0
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0
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520
views
0
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3
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0
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1.0k
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0
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0
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1
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1.0k
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1
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R: Error when using ComBat
R sva combat written 2.5 years ago by kkj30830 • updated 22 months ago by susanna.downing0
0
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486
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0
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0
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0
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689
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0
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0
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0
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1.2k
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0
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0
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1
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940
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1
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15
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3
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4.3k
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3
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Remove Surrogate Variables and Batch
R sva combat written 4.2 years ago by tucanj70 • updated 2.4 years ago by ddiez1.7k
1
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0
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2.3k
views
0
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ComBat (SVA) Application - Two Technical Effects
bioconductor combat sva written 4.1 years ago by andrew.j.skelton735.5k • updated 2.4 years ago by Biostar ♦♦ 20
16
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2
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15k
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2
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Remove Batch Effect From RNAseq with SVAseq and Combat
combat svaseq model.matrix rna-seq batch effect written 3.9 years ago by cankutcubuk170 • updated 2.5 years ago by amoltej80
1
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1
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1.4k
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1
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what is the meaning of covariates in ComBat
R combat written 2.7 years ago by LJ170
59
votes
3
answers
11k
views
19 follow
3
answers
Are we tricking ourselves with batch effect correction?
sva combat batch effect written 3.7 years ago by Christian2.7k • updated 2.7 years ago by vegard nygaard140
6
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3
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2.9k
views
3
answers
Combat normalization returns negative values
batch correction sva combat rna-seq R written 3.1 years ago by lahat.albert50 • updated 3.1 years ago by mamunbabu200140
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