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<prev • 34 results • page 1 of 2 • next >
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ComBat on TCGA RNAseq data generates all NAN
tcga combat written 17 months ago by mforde84 • 1.2k • updated 7 days ago by coyoung • 0
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65
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ComBat correction with one batch containing only one sample - keep or remove?
proteome sva combat R written 8 days ago by hesse.sebastian • 0
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96
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How to remove batch effect in copy number segment mean
cna segment combat batch effect written 13 days ago by sugus • 20
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1
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2.1k
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1
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Using ComBat on RNASeq FPKM counts
combat rna-seq written 2.1 years ago by ebrudermanver • 40 • updated 3 months ago by Kevin Blighe ♦ 32k
1
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1
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390
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1
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Help with multiple batch effects
sva batch effects combat written 4 months ago by fp89 • 0 • updated 4 months ago by genomax ♦ 58k
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185
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Batch effect correction
sva combat matlab written 5 months ago by gstavropoulos1991 • 0
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284
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Removing batch effects between Affymetrix and Agilent platforms using ComBat
agilent combat microarray affymetrix written 6 months ago by nazaninhoseinkhan • 340 • updated 6 months ago by andrew.j.skelton73 ♦ 5.4k
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5 follow
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Batch effects : ComBat or removebatcheffects (limma package) ?
sva batch effects combat limma written 15 months ago by lessismore • 520 • updated 12 months ago by Kevin Blighe ♦ 32k
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Error in while (change > conv) { : missing value where TRUE/FALSE needed
combat rna-seq batch effect written 13 months ago by lessismore • 520 • updated 13 months ago by Biostar ♦♦ 20
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6 follow
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RNA-Seq Batch correction negative values
batch-effect combat scran rna-seq sva written 13 months ago by rmf • 440 • updated 13 months ago by Kevin Blighe ♦ 32k
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5 follow
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SVA : Setting up the data from an ExpressionSet and applying sva function to extimate batches
sva batch effects combat written 16 months ago by lessismore • 520 • updated 14 months ago by Biostar ♦♦ 20
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1
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542
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Time point microarray data correcting for batch effects
combat microarray batch effect written 15 months ago by tleona3 • 10 • updated 15 months ago by mforde84 • 1.2k
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1.2k
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svaseq and combat
combat sva effect batch written 18 months ago by Folder40g • 110 • updated 16 months ago by Biostar ♦♦ 20
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8.7k
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2
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removing batch effects using ComBat and SVA
R sva combat batch effect written 2.4 years ago by LJ • 150 • updated 16 months ago by lessismore • 520
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1
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1
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Converting beta value to M value (when beta=1)
dna methylation combat written 16 months ago by janhuang.cn • 120 • updated 16 months ago by Devon Ryan ♦ 86k
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472
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meta-analysis: can I still combine the 2 studies?
microbiome 16s combat meta-analysis otu written 17 months ago by alowi33 • 0
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any recommended tools for batch effect and normalization not written in R?
python batch effect combat rna-seq R written 20 months ago by dyollluap • 300 • updated 18 months ago by Biostar ♦♦ 20
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930
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R: Error when using ComBat
R sva combat written 2.2 years ago by kkj3083 • 0 • updated 19 months ago by susanna.downing • 0
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441
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Scan Dates will not show
bioconductor affy combat written 20 months ago by jmannhei • 0
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625
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Correcting batch effect from known variables in RnBeads using Combat
450k combat methylation rnbeads batch effect written 20 months ago by rahel14350 • 20
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Differential expression on Combat-adjusted FPKM
fpkm combat rna-seq differential expression written 24 months ago by mare116 • 0
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Batch correction (mass spectrometry data)
biostatistics R sva combat batch correction written 24 months ago by mkhadka10 • 0
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4.1k
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Remove Surrogate Variables and Batch
R sva combat written 4.0 years ago by tucanj • 70 • updated 2.1 years ago by ddiez • 1.7k
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2.2k
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ComBat (SVA) Application - Two Technical Effects
bioconductor combat sva written 3.8 years ago by andrew.j.skelton73 ♦ 5.4k • updated 2.1 years ago by Biostar ♦♦ 20
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14k
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Remove Batch Effect From RNAseq with SVAseq and Combat
combat svaseq model.matrix rna-seq batch effect written 3.7 years ago by cankutcubuk • 170 • updated 2.3 years ago by amoltej • 80
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what is the meaning of covariates in ComBat
R combat written 2.4 years ago by LJ • 150
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10k
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17 follow
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Are we tricking ourselves with batch effect correction?
sva combat batch effect written 3.5 years ago by Christian • 2.7k • updated 2.5 years ago by vegard nygaard • 130
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2.7k
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Combat normalization returns negative values
batch correction sva combat rna-seq R written 2.8 years ago by lahat.albert • 50 • updated 2.8 years ago by mamunbabu2001 • 40
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3
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6 follow
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Normalizing For Batch Effect In RNA-Seq Data
batch-effect principle-component combat rna-seq written 4.6 years ago by Tom A • 80 • updated 3.0 years ago by tonja.r • 430
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1
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How to remove batch effect from RNA-seq data?
sva deseq2 combat rna-seq batch written 3.4 years ago by alesssia • 480 • updated 3.4 years ago by Michael Love • 1.6k
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