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<prev • 36 results • page 1 of 2 • next >
9
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2
answers
9.6k
views
2
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removing batch effects using ComBat and SVA
R sva combat batch effect written 2.7 years ago by LJ • 170 • updated 9 days ago by Agustin Gonzalez-Vicente • 0
3
votes
0
answers
96
views
0
answers
sva combat removes wanted biological variation
R sva combat rna-seq pca written 18 days ago by exin • 50 • updated 18 days ago by zx8754 ♦ 6.5k
0
votes
0
answers
148
views
0
answers
ComBat correction with one batch containing only one sample - keep or remove?
proteome sva combat R written 3 months ago by hesse.sebastian • 20 • updated 27 days ago by Biostar ♦♦ 20
1
vote
0
answers
94
views
0
answers
Normalise batch effects for Percent Spliced In (PSI) matrice
sva combat splicing written 4 weeks ago by ZheFrench • 190
0
votes
1
answer
188
views
1
answer
How to remove batch effect in copy number segment mean
cna segment combat batch effect written 3 months ago by sugus • 30 • updated 7 weeks ago by Biostar ♦♦ 20
0
votes
1
answer
871
views
1
answer
ComBat on TCGA RNAseq data generates all NAN
tcga combat written 20 months ago by mforde84 • 1.2k • updated 3 months ago by coyoung • 0
5
votes
1
answer
2.4k
views
1
answer
Using ComBat on RNASeq FPKM counts
combat rna-seq written 2.3 years ago by ebrudermanver • 40 • updated 6 months ago by Kevin Blighe ♦ 37k
1
vote
1
answer
568
views
1
answer
Help with multiple batch effects
sva batch effects combat written 7 months ago by fp89 • 0 • updated 7 months ago by genomax ♦ 62k
0
votes
1
answer
291
views
1
answer
Batch effect correction
sva combat matlab written 8 months ago by gstavropoulos1991 • 0
0
votes
1
answer
403
views
1
answer
Removing batch effects between Affymetrix and Agilent platforms using ComBat
agilent combat microarray affymetrix written 9 months ago by nazaninhoseinkhan • 360 • updated 9 months ago by andrew.j.skelton73 ♦ 5.5k
9
votes
1
answer
4.2k
views
6 follow
1
answer
Batch effects : ComBat or removebatcheffects (limma package) ?
sva batch effects combat limma written 18 months ago by lessismore • 570 • updated 15 months ago by Kevin Blighe ♦ 37k
3
votes
0
answers
3.6k
views
0
answers
Error in while (change > conv) { : missing value where TRUE/FALSE needed
combat rna-seq batch effect written 16 months ago by lessismore • 570 • updated 16 months ago by Biostar ♦♦ 20
7
votes
1
answer
1.3k
views
6 follow
1
answer
RNA-Seq Batch correction negative values
batch-effect combat scran rna-seq sva written 16 months ago by rmf • 540 • updated 16 months ago by Kevin Blighe ♦ 37k
6
votes
0
answers
2.0k
views
5 follow
0
answers
SVA : Setting up the data from an ExpressionSet and applying sva function to extimate batches
sva batch effects combat written 19 months ago by lessismore • 570 • updated 17 months ago by Biostar ♦♦ 20
2
votes
1
answer
600
views
1
answer
Time point microarray data correcting for batch effects
combat microarray batch effect written 18 months ago by tleona3 • 10 • updated 18 months ago by mforde84 • 1.2k
0
votes
0
answers
1.3k
views
0
answers
svaseq and combat
combat sva effect batch written 21 months ago by Folder40g • 110 • updated 19 months ago by Biostar ♦♦ 20
3
votes
1
answer
1.0k
views
1
answer
Converting beta value to M value (when beta=1)
dna methylation combat written 19 months ago by janhuang.cn • 120 • updated 19 months ago by Devon Ryan ♦ 88k
0
votes
0
answers
520
views
0
answers
meta-analysis: can I still combine the 2 studies?
microbiome 16s combat meta-analysis otu written 20 months ago by alowi33 • 0
3
votes
0
answers
1.0k
views
0
answers
any recommended tools for batch effect and normalization not written in R?
python batch effect combat rna-seq R written 23 months ago by dyollluap • 300 • updated 21 months ago by Biostar ♦♦ 20
0
votes
1
answer
1.0k
views
1
answer
R: Error when using ComBat
R sva combat written 2.5 years ago by kkj3083 • 0 • updated 22 months ago by susanna.downing • 0
0
votes
0
answers
486
views
0
answers
Scan Dates will not show
bioconductor affy combat written 23 months ago by jmannhei • 0
0
votes
0
answers
689
views
0
answers
Correcting batch effect from known variables in RnBeads using Combat
450k combat methylation rnbeads batch effect written 23 months ago by rahel14350 • 30
0
votes
0
answers
1.2k
views
0
answers
Differential expression on Combat-adjusted FPKM
fpkm combat rna-seq differential expression written 2.2 years ago by mare116 • 0
0
votes
1
answer
940
views
1
answer
Batch correction (mass spectrometry data)
biostatistics R sva combat batch correction written 2.2 years ago by mkhadka10 • 0
15
votes
3
answers
4.3k
views
3
answers
Remove Surrogate Variables and Batch
R sva combat written 4.2 years ago by tucanj • 70 • updated 2.4 years ago by ddiez • 1.7k
1
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0
answers
2.3k
views
0
answers
ComBat (SVA) Application - Two Technical Effects
bioconductor combat sva written 4.1 years ago by andrew.j.skelton73 ♦ 5.5k • updated 2.4 years ago by Biostar ♦♦ 20
16
votes
2
answers
15k
views
2
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Remove Batch Effect From RNAseq with SVAseq and Combat
combat svaseq model.matrix rna-seq batch effect written 3.9 years ago by cankutcubuk • 170 • updated 2.5 years ago by amoltej • 80
1
vote
1
answer
1.4k
views
1
answer
what is the meaning of covariates in ComBat
R combat written 2.7 years ago by LJ • 170
59
votes
3
answers
11k
views
19 follow
3
answers
Are we tricking ourselves with batch effect correction?
sva combat batch effect written 3.7 years ago by Christian • 2.7k • updated 2.7 years ago by vegard nygaard • 140
6
votes
3
answers
2.9k
views
3
answers
Combat normalization returns negative values
batch correction sva combat rna-seq R written 3.1 years ago by lahat.albert • 50 • updated 3.1 years ago by mamunbabu2001 • 40
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