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<prev • 47 results • page 1 of 2 • next >
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Extra adjustment variables during batch effect correction
combat rna-seq batch effect correction written 19 days ago by mike-zx • 160
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1
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108
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1
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Can I use batch effect correction "by parts"?
combat rna-seq batch effect written 24 days ago by mike-zx • 160
4
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1
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481
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1
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sva combat removes wanted biological variation
R sva combat rna-seq pca written 12 months ago by exin • 50 • updated 10 weeks ago by Biostar ♦♦ 20
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112
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In SVA, the percent of biological variable of interest didnot change after adding SV1.
R sva combat written 3 months ago by dhwani2410 • 0 • updated 3 months ago by Kevin Blighe ♦ 53k
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171
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1
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Batch correction in DESeq2
deseq2 combat batch effect written 3 months ago by Arindam Ghosh • 200 • updated 3 months ago by Kevin Blighe ♦ 53k
3
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1
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172
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1
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Can I take 'organ type' as a batch effect and use ComBat to remove organ dependent variations?
sva batch effects combat rna-seq cross-species written 4 months ago by rodguinea • 0 • updated 4 months ago by i.sudbery ♦ 6.6k
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439
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1
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analysis of multiple batches and multiple treatment conditions in scRNA-seq
scrna-seq deseq2 combat limma edger written 5 months ago by Bogdan • 910 • updated 5 months ago by sofiagreen72211 • 30
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1
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328
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1
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Should I pre-normalize RNAseq data before combat?
R normalize combat rna-seq batch effect written 6 months ago by zhaoliang0302 • 0 • updated 6 months ago by Kevin Blighe ♦ 53k
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1
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291
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1
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Remove batch effect for many RNA-seq
sva combat rna-seq batch effect written 6 months ago by Shaway • 0
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280
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How to assess RNA-Seq batch correction success?
batch correction deseq2 combat limma rna-seq written 8 months ago by cancer_tantra • 10
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svaseq and combat
combat sva effect batch written 2.7 years ago by Folder40g • 120 • updated 10 months ago by liull_hust • 0
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0
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900
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Batch correction: Before and After Visualisation
combat deseq2 svaseq rna-seq written 11 months ago by prabin.dm • 170
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1
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339
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Multiplatform batch correction using combat
combat microarray written 11 months ago by Devyani • 30
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13k
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1
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removing batch effects using ComBat and SVA
R sva combat batch effect written 3.6 years ago by LJ • 190 • updated 11 months ago by Agustin Gonzalez-Vicente • 50
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444
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ComBat correction with one batch containing only one sample - keep or remove?
proteome sva combat R written 14 months ago by hesse.sebastian • 80 • updated 12 months ago by Biostar ♦♦ 20
1
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373
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Normalise batch effects for Percent Spliced In (PSI) matrice
sva combat splicing written 12 months ago by ZheFrench • 270
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1
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801
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1
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How to remove batch effect in copy number segment mean
cna segment combat batch effect written 14 months ago by sugus • 40 • updated 13 months ago by Biostar ♦♦ 20
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1
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ComBat on TCGA RNAseq data generates all NAN
tcga combat written 2.6 years ago by mforde84 • 1.2k • updated 14 months ago by coyoung • 0
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1
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3.7k
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1
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Using ComBat on RNASeq FPKM counts
combat rna-seq written 3.3 years ago by ebrudermanver • 60 • updated 17 months ago by Kevin Blighe ♦ 53k
1
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1
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1.4k
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1
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Help with multiple batch effects
sva batch effects combat written 19 months ago by fp89 • 20 • updated 19 months ago by genomax ♦ 77k
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1
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685
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1
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Batch effect correction
sva combat matlab written 20 months ago by gstavropoulos1991 • 10
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817
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1
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Removing batch effects between Affymetrix and Agilent platforms using ComBat
agilent combat microarray affymetrix written 21 months ago by nazaninhoseinkhan • 390 • updated 21 months ago by andrew.j.skelton73 ♦ 5.9k
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1
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12k
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14 follow
1
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Batch effects : ComBat or removebatcheffects (limma package) ?
sva batch effects combat limma written 2.5 years ago by lessismore • 740 • updated 2.3 years ago by Kevin Blighe ♦ 53k
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6.4k
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7 follow
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Error in while (change > conv) { : missing value where TRUE/FALSE needed
combat rna-seq batch effect written 2.3 years ago by lessismore • 740 • updated 2.3 years ago by Biostar ♦♦ 20
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1
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2.1k
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6 follow
1
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RNA-Seq Batch correction negative values
batch-effect combat scran rna-seq sva written 2.3 years ago by rmf • 780 • updated 2.3 years ago by Kevin Blighe ♦ 53k
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6 follow
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SVA : Setting up the data from an ExpressionSet and applying sva function to extimate batches
sva batch effects combat written 2.5 years ago by lessismore • 740 • updated 2.4 years ago by Biostar ♦♦ 20
2
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890
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Time point microarray data correcting for batch effects
combat microarray batch effect written 2.4 years ago by tleona3 • 10 • updated 2.4 years ago by mforde84 • 1.2k
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1
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Converting beta value to M value (when beta=1)
dna methylation combat written 2.6 years ago by janhuang.cn • 150 • updated 2.6 years ago by Devon Ryan ♦ 93k
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699
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meta-analysis: can I still combine the 2 studies?
microbiome 16s combat meta-analysis otu written 2.7 years ago by alowi33 • 0
3
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any recommended tools for batch effect and normalization not written in R?
python batch effect combat rna-seq R written 2.8 years ago by dyollluap • 300 • updated 2.7 years ago by Biostar ♦♦ 20
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