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<prev • 53 results • page 1 of 2 • next >
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error in running Combat function
r studio R sva combat written 15 days ago by reza • 240
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1
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169
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1
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Batch-correction on tximport data from salmon
salmon sva deseq2 combat rna-seq written 7 weeks ago by mfrech6 • 0
12
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1
answer
9.4k
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9 follow
1
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Error in while (change > conv) { : missing value where TRUE/FALSE needed
combat rna-seq batch effect written 3.3 years ago by lessismore • 930 • updated 7 weeks ago by keryruo • 10
29
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1
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3.2k
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9 follow
1
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Batch correction in DESeq2
deseq2 combat batch effect written 15 months ago by Arindam Ghosh • 340 • updated 9 weeks ago by Kevin Blighe ♦ 69k
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256
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Adjusting for batch effect and covariates with ComBat
combat rna-seq batch effect written 12 weeks ago by juara • 10
6
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2
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348
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5 follow
2
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Normalization and batch effects correction in RNA-Seq data
combat rna-seq written 4 months ago by elb • 200 • updated 4 months ago by rpolicastro ♦ 3.2k
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2
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309
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5 follow
2
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How to perform batch correction when we have only single condition?
batcheffects sva deseq2 combat written 6 months ago by svp • 420
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2
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removing batch effects using ComBat and SVA
R sva combat batch effect written 4.6 years ago by LJ • 250 • updated 6 months ago by zhao03 • 30
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282
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Batch effect for SNP array
sva combat snp batch effect written 11 months ago by Taylor95 • 10 • updated 10 months ago by Biostar ♦♦ 20
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343
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Extra adjustment variables during batch effect correction
combat rna-seq batch effect correction written 12 months ago by mike-zx • 240
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1
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303
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1
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Can I use batch effect correction "by parts"?
combat rna-seq batch effect written 12 months ago by mike-zx • 240
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1
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807
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1
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sva combat removes wanted biological variation
R sva combat rna-seq pca written 24 months ago by exin • 50 • updated 14 months ago by Biostar ♦♦ 20
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268
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In SVA, the percent of biological variable of interest didnot change after adding SV1.
R sva combat written 15 months ago by dhwani2410 • 0 • updated 15 months ago by Kevin Blighe ♦ 69k
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348
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1
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Can I take 'organ type' as a batch effect and use ComBat to remove organ dependent variations?
sva batch effects combat rna-seq cross-species written 17 months ago by rodguinea • 0 • updated 17 months ago by i.sudbery ♦ 10k
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1
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1.3k
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1
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analysis of multiple batches and multiple treatment conditions in scRNA-seq
scrna-seq deseq2 combat limma edger written 18 months ago by Bogdan • 1.1k • updated 18 months ago by sofiagreen72211 • 30
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1
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1.1k
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1
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Should I pre-normalize RNAseq data before combat?
R normalize combat rna-seq batch effect written 18 months ago by zhaoliang0302 • 10 • updated 18 months ago by Kevin Blighe ♦ 69k
2
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1
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706
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1
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Remove batch effect for many RNA-seq
sva combat rna-seq batch effect written 18 months ago by Shaway • 0
6
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1
answer
560
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1
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How to assess RNA-Seq batch correction success?
batch correction deseq2 combat limma rna-seq written 20 months ago by borkk • 90
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3.0k
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svaseq and combat
combat sva effect batch written 3.7 years ago by Folder40g • 140 • updated 22 months ago by liull_hust • 0
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2.3k
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Batch correction: Before and After Visualisation
combat deseq2 svaseq rna-seq written 23 months ago by prabin.dm • 220
3
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1
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490
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1
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Multiplatform batch correction using combat
combat microarray written 23 months ago by Devyani • 30
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909
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ComBat correction with one batch containing only one sample - keep or remove?
proteome sva combat R written 2.2 years ago by Sebastian Hesse • 190 • updated 2.0 years ago by Biostar ♦♦ 20
1
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0
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633
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Normalise batch effects for Percent Spliced In (PSI) matrice
sva combat splicing written 2.0 years ago by ZheFrench • 310
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1
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1.1k
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1
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How to remove batch effect in copy number segment mean
cna segment combat batch effect written 2.2 years ago by sugus • 50 • updated 2.1 years ago by Biostar ♦♦ 20
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1
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1.8k
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1
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ComBat on TCGA RNAseq data generates all NAN
tcga combat written 3.6 years ago by mforde84 • 1.3k • updated 2.2 years ago by coyoung • 0
6
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1
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5.1k
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1
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Using ComBat on RNASeq FPKM counts
combat rna-seq written 4.2 years ago by ebrudermanver • 80 • updated 2.5 years ago by Kevin Blighe ♦ 69k
1
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1
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2.5k
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1
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Help with multiple batch effects
sva batch effects combat written 2.6 years ago by fp89 • 20 • updated 2.6 years ago by GenoMax ♦ 95k
1
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1
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999
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1
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Batch effect correction
sva combat matlab written 2.7 years ago by gstavropoulos1991 • 10
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1
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1.3k
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1
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Removing batch effects between Affymetrix and Agilent platforms using ComBat
agilent combat microarray affymetrix written 2.8 years ago by nazaninhoseinkhan • 410 • updated 2.8 years ago by andrew.j.skelton73 ♦ 6.1k
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1
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20k
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17 follow
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Batch effects : ComBat or removebatcheffects (limma package) ?
sva batch effects combat limma written 3.5 years ago by lessismore • 930 • updated 3.2 years ago by Kevin Blighe ♦ 69k
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