Showing selected topics • reset
<prev • 50 results • page 1 of 2 • next >
6
votes
2
answers
173
views
5 follow
2
answers
Normalization and batch effects correction in RNA-Seq data
combat rna-seq written 6 weeks ago by elb190 • updated 6 weeks ago by rpolicastro1.9k
5
votes
2
answers
214
views
5 follow
2
answers
12
votes
2
answers
16k
views
2
answers
removing batch effects using ComBat and SVA
R sva combat batch effect written 4.4 years ago by LJ230 • updated 3 months ago by zhao0330
0
votes
0
answers
220
views
0
answers
Batch effect for SNP array
sva combat snp batch effect written 8 months ago by Taylor9510 • updated 7 months ago by Biostar ♦♦ 20
0
votes
0
answers
271
views
0
answers
3
votes
1
answer
256
views
1
answer
4
votes
1
answer
735
views
1
answer
sva combat removes wanted biological variation
R sva combat rna-seq pca written 20 months ago by exin50 • updated 11 months ago by Biostar ♦♦ 20
0
votes
0
answers
210
views
0
answers
12
votes
1
answer
1.9k
views
7 follow
1
answer
Batch correction in DESeq2
deseq2 combat batch effect written 12 months ago by Arindam Ghosh310 • updated 12 months ago by Kevin Blighe66k
3
votes
1
answer
294
views
1
answer
3
votes
1
answer
1.0k
views
1
answer
0
votes
1
answer
934
views
1
answer
Should I pre-normalize RNAseq data before combat?
R normalize combat rna-seq batch effect written 15 months ago by zhaoliang030210 • updated 15 months ago by Kevin Blighe66k
2
votes
1
answer
602
views
1
answer
6
votes
1
answer
489
views
1
answer
0
votes
0
answers
2.8k
views
0
answers
svaseq and combat
combat sva effect batch written 3.4 years ago by Folder40g140 • updated 19 months ago by liull_hust0
0
votes
0
answers
1.9k
views
0
answers
3
votes
1
answer
451
views
1
answer
0
votes
0
answers
738
views
0
answers
ComBat correction with one batch containing only one sample - keep or remove?
proteome sva combat R written 23 months ago by Sebastian Hesse180 • updated 21 months ago by Biostar ♦♦ 20
1
vote
0
answers
572
views
0
answers
0
votes
1
answer
1.1k
views
1
answer
How to remove batch effect in copy number segment mean
cna segment combat batch effect written 23 months ago by sugus50 • updated 22 months ago by Biostar ♦♦ 20
0
votes
1
answer
1.6k
views
1
answer
ComBat on TCGA RNAseq data generates all NAN
tcga combat written 3.3 years ago by mforde841.3k • updated 23 months ago by coyoung0
6
votes
1
answer
4.7k
views
1
answer
Using ComBat on RNASeq FPKM counts
combat rna-seq written 4.0 years ago by ebrudermanver80 • updated 2.2 years ago by Kevin Blighe66k
1
vote
1
answer
2.3k
views
1
answer
Help with multiple batch effects
sva batch effects combat written 2.3 years ago by fp8920 • updated 2.3 years ago by genomax91k
1
vote
1
answer
914
views
1
answer
Batch effect correction
sva combat matlab written 2.4 years ago by gstavropoulos199110
0
votes
1
answer
1.2k
views
1
answer
22
votes
1
answer
18k
views
17 follow
1
answer
Batch effects : ComBat or removebatcheffects (limma package) ?
sva batch effects combat limma written 3.2 years ago by lessismore930 • updated 3.0 years ago by Kevin Blighe66k
12
votes
0
answers
8.7k
views
8 follow
0
answers
Error in while (change > conv) { : missing value where TRUE/FALSE needed
combat rna-seq batch effect written 3.0 years ago by lessismore930 • updated 3.0 years ago by Biostar ♦♦ 20
7
votes
1
answer
2.9k
views
6 follow
1
answer
RNA-Seq Batch correction negative values
batch-effect combat scran rna-seq sva written 3.1 years ago by rmf970 • updated 3.1 years ago by Kevin Blighe66k
12
votes
0
answers
5.2k
views
7 follow
0
answers
2
votes
1
answer
1.1k
views
1
answer
Time point microarray data correcting for batch effects
combat microarray batch effect written 3.2 years ago by tleona310 • updated 3.2 years ago by mforde841.3k
<prev • 50 results • page 1 of 2 • next >

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 1360 users visited in the last hour