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written 29 days ago by
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genomax ♦ 52k
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genomax ♦ 52k
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anicet.ebou • 130
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written 2.1 years ago by
tanvi.phaltane • 70
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23 months ago by
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Recent Votes
- A: Questions regarding VST/rlog correction to plot sample distances between RNA-seq
- How Can I Make A Bed File?
- A: How to graphically tell if data has been normalized?
- A: How to graphically tell if data has been normalized?
- A: Questions regarding VST/rlog correction to plot sample distances between RNA-seq
- C: Convert (Copy Number Variation) CNV to gene
- A: Plotting Human Karyotype - Software
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Recent Replies
-
A: Generating random DNA sequence and paired-end alignment by
Johan Zicola • 20
I wrote a python script with the different functions you would need to test structural variation ...
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C: is Amazon Web Services (AWS) useful? by
genomax ♦ 52k
This question can be quite tricky to answer. AWS will suffice as long as you have command line un...
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C: Quality Check Your Samples and Biological Replicates by
genomax ♦ 52k
https://www.biostars.org/p/309884/ Note: You may want to post full images instead of the just pr...
-
C: Need suggestions for RNA-seq quantification tools benchmarking. by
ATpoint • 5.7k
Is this a thesis project? I am asking because you (IMHO) will barely find any field in bioinforma...
-
C: Quality Check Your Samples and Biological Replicates by
eyonesi • 0
hello dear genomax I used trinity/RSEM/edgeR pipeline for analysis. The quality check of samples ...
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C: Questions regarding VST/rlog correction to plot sample distances between RNA-seq by
salamandra • 130
Thank you. Noticed now that, if we apply VST on the raw values : ddsHTSeq <- DESeqDataSet...
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A: I want Blast old by
a.zielezinski ♦ 8.3k
You can download executables of old BLAST (in all versions) from the NCBI ftp server: [ftp://ftp....
-
C: rsem calculate expression using STAR. Reference genome format? by
k.kathirvel93 • 50
Hi h.mon How we can do quantification with RSEM by using STAR aligned .bam(aligned sepeartely by...
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C: fastPHASE -F provided to estimate haplotype frequencies, but no freqs in output by
Shicheng Guo • 5.2k
Just check whether you are latest fastPHASE. I just run it now and -F works.
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C: Convert (Copy Number Variation) CNV to gene by
Ram ♦ 16k
What do you know of CNVs? CNVs are not comparable to genes, because CNV is a type of mutation and...
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A: fastPHASE -F provided to estimate haplotype frequencies, but no freqs in output by
1490784292 • 0
hi！do you know how to use the fasephase,I can't get the freqs in output,can you give me some advi...
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C: sorting a BAM file by
Bogdan • 530
Thank you Philipp for your suggestion !
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