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Molecular Operating Environment Users?

chemical group computing moe written 4.4 years ago by Jonathan Crowther • 180 • updated 6 days ago by khatab.adnan • 0

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231

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Desktop or Cloud Computing: Advice needed

mac cloud computing deskitop digital ocean written 5 months ago by akh22 • 10 • updated 5 months ago by Shicheng Guo • 7.3k

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Job: Bioinformatics Scientist - Becton Dickinson

software bioinformatics network analysis job computing written 2.9 years ago by nicole_vacca • 0

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Bowtie multi-threads and SSD vs spindle disk performance

hpc next-gen computing alignment written 3.2 years ago by agbiotec • 0 • updated 3.2 years ago by Dan Gaston ♦ 7.1k

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Tutorial: Introduction to AWS Cloud Computing

aws tutorial ec2 cloud computing written 3.8 years ago by Malachi Griffith ♦ 17k • updated 3.3 years ago by WayneSantos • 0

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Forum: Reproducible Science Short Example

forum open-science reproducible-science computing written 4.5 years ago by Eric Normandeau ♦ 10k • updated 4.5 years ago by David Fredman • 970

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Teacher to Kevin Blighe ♦ 35k
Teacher to i.sudbery ♦ 3.1k
Good Answer to i.sudbery ♦ 3.1k
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Recent Replies

A: Denovo variant detection in trios using only 3 gVCF files by manuel.belmadani • 90
I don't think you can rely on the order of the genotype calls to identify which one is the father...
C: Downloading BAM files and converting to fastq by genomax ♦ 60k
https://www.biostars.org/u/51614/ : Don't forget to follow up on your threads. If an answer was...
A: Combining Data Of Multiple Vcfs Into One. by Shicheng Guo • 7.3k
java -jar GenomeAnalysisTK.jar \ -T CombineVariants \ -R reference.fasta \ ...
C: How to speed up trimming using trim galorer by genomax ♦ 60k
> other tools do not work properly, only trim galore works well I find that hard to believe. ...
A: How to speed up trimming using trim galorer by manuel.belmadani • 90
Depending on your machine's memory and number of CPUs available, you could try to parallelize it....
A: Enhanced Volcano transcript label by Kevin Blighe ♦ 35k
Hey, thanks for the comments. There is a somewhat indirect way of doing this by modifying the t...
C: De-duplicate UMI at FASTQ level by i.sudbery ♦ 3.1k
Each row shous the number of locations with a given average edit distance between UMIs. For examp...
C: Downloading BAM files and converting to fastq by lamia_203 • 10
Thank you! This seems to work.
A: tools for global alignment by h.mon ♦ 22k
Bowtie2 has an `--end-to-end` mode, read its [manual][1]. BBMap also is a global aligner. But I...
A: Downloading BAM files and converting to fastq by manuel.belmadani • 90
For sure, see the bamtofastq tool from bedtools: https://bedtools.readthedocs.io/en/latest/conte...
C: AddOrReplaceReadGroups error - by RamRS ♦ 20k
Welcome to Biostars and thank you for the contribution! Please use the formatting bar (especially...
A: AddOrReplaceReadGroups error - by austinjpaul • 10
Your input files are coming from the `./mapping/` directory. Your output path is specified as `....

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