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Molecular Operating Environment Users?

chemical group computing moe written 5.3 years ago by Jonathan Crowther • 190 • updated 11 months ago by khatab.adnan • 0

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391

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Desktop or Cloud Computing: Advice needed

mac cloud computing deskitop digital ocean written 16 months ago by akh22 • 40 • updated 16 months ago by Shicheng Guo • 7.8k

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Job: Bioinformatics Scientist - Becton Dickinson

software bioinformatics network analysis job computing written 3.8 years ago by nicole_vacca • 0

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Bowtie multi-threads and SSD vs spindle disk performance

hpc next-gen computing alignment written 4.1 years ago by agbiotec • 0 • updated 4.1 years ago by Dan Gaston ♦ 7.1k

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Tutorial: Introduction to AWS Cloud Computing

aws tutorial ec2 cloud computing written 4.7 years ago by Malachi Griffith ♦ 18k • updated 4.2 years ago by WayneSantos • 0

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Forum: Reproducible Science Short Example

forum open-science reproducible-science computing written 5.4 years ago by Eric Normandeau ♦ 10k • updated 5.4 years ago by David Fredman • 990

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Teacher to chrchang523 ♦ 6.1k
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Recent Replies

C: How to view gi_taxid_nucl.dmp that is 11.3 GB from NCBI by Ahill • 1.6k
On Windows, presuming the .dmp files are a delimited text format, you can view using the [more][1...
A: error in mat2csv ValueError: Shape of passed values is (4926, 33694), indices im by yueli7 • 80
should have a gene.tsv file
A: mat2csv IOError: Not a valid path to a feature-barcode mtx directory: '/home/li/ by yueli7 • 80
should have a gene.tsv file
C: How to view gi_taxid_nucl.dmp that is 11.3 GB from NCBI by peggyw • 0
sqlLite - interesting and not heard of grep. Windows is my primary tool, yes I know we are all ...
A: How to view gi_taxid_nucl.dmp that is 11.3 GB from NCBI by peggyw • 0
wrong place to post
C: How to view gi_taxid_nucl.dmp that is 11.3 GB from NCBI by Ahill • 1.6k
Google 'gi_taxid_nucl.dmp.gz' yields a 2013 article https://www.polarmicrobes.org/some-things-sho...
C: Correlation of two ChIP-seq signals? by biostart • 310
The code is quite standard, e.g. I calculated correlations between BigWig files using deepTools (...
A: How to Find Cell Type From Marker Genes (SC-RNA-Seq) by Kevin Blighe ♦ 52k
Apologies that nobody answered. Most researchers do indeed just use pre-compiled gene lists in or...
C: Correlation of two ChIP-seq signals? by ATpoint ♦ 26k
Can you add some representative code and screenshots? With just words it is difficult to reproduc...
A: grouping of maf results in GWAS by chrchang523 ♦ 6.1k
By itself, this is nothing to worry about. If you have no missing genotypes, there are only 5335...
C: Any recommendation for pathway analysis of Wheat RNA-seq data? by bbmisraccb • 40
And, sure not an ID conversion issue? Strange that AgriGO would not map any plant DEGs for GO ana...
A: how to find a pathway using a set of metabolites by bbmisraccb • 40
Hi, Try FELLA: https://bmcbioinformatics.biomedcentral.com/articles/10.1186/s12859-018-2487-5 an...

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