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written 3.2 years ago by
magnusinformatics • 0
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3.2 years ago by
ruchi1st2002 • 0
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Recent Replies
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C: How to retrieve sets of protein sequences? by
RamRS ♦ 19k
It's Ensembl, there's no `e` at the end.
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C: bash & quickGO to download gene symbols of a GO term by
Adrian Pelin • 2.2k
This is pretty sweet! Thanks!
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C: Analysing two SNPs and their association with phenotypes, and co-occurence by
abdi_g96 • 0
What do you mean by how many independent tests? The sample size is ~1500 if I've understood you c...
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C: annotation - biomaRt - getBM - multiple entrez ID by
Learner • 110
@Kevin Blighe instead the gene_name, please now try this one, you will see that you get error ...
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C: How to retrieve sets of protein sequences? by
vkkodali • 690
If you just want to extract the IDs and not care about the order they are in then you can skip th...
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C: Analysing two SNPs and their association with phenotypes, and co-occurence by
Kevin Blighe ♦ 33k
I see. So, how many independent tests are we talking about? - a few?; tens?; hundreds?; thousands...
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C: Analysing two SNPs and their association with phenotypes, and co-occurence by
abdi_g96 • 0
So these SNPs have been highlighted by other studies as possibly having an implication in food al...
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C: Split fastq according to barcodes by
genomax ♦ 59k
Index sequences are in both R1/R2 headers (see example you posted above). As suggested by @finswi...
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C: Analysing two SNPs and their association with phenotypes, and co-occurence by
Kevin Blighe ♦ 33k
Can you elaborate on what exactly you want to do? Do you want to test *every* SNP as pairs?; or, ...
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C: annotation - biomaRt - getBM - multiple entrez ID by
Kevin Blighe ♦ 33k
This is the first time that you mention *GO id*. What do you mean? Please try to explain in detai...
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C: annotation - biomaRt - getBM - multiple entrez ID by
Learner • 110
@Kevin Blighe Kevin, how did you check for it? I checked the attributes but with no success. is t...
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C: Feature extraction from DNA sequence. by
WouterDeCoster ♦ 35k
> For each sequence (wild and mutant), I'd like to compute a score based > on the overlap o...
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